MSTRG.11046.3.p2 (mRNA) -

Overview
NameMSTRG.11046.3.p2
Unique NameMSTRG.11046.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:101185..109922+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11046.3.p2 ID=MSTRG.11046.3.p2|Name=MSTRG.11046.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8738bp|location=Sequence derived from alignment at sc0000079_pilon:101185..109922+ (Clytia hemisphaerica_ch_hm2_pilon)
agaGTCCATAGAgtttgagaaaatcaagttaaaagaaaagaatctttttg
tGATGTACCTTGTATAAGATTTAACAACCTGTATTTCCAGCATCATCGCC
ACATCCTCATCCAGTTAATGTTCAACAGAAAACGCAGACCAGCTTTCCAG
TTGTGATCAAATCACTCAGtaaacaaacaaatgaaaacacattatttcat
aatttcaaaagatttggaGTCATCATTCCTAATGGTGtaactattttgaa
aaataacgatGGAACTTCAAAGTGTATGGGCTATGTTAATTATATCAACC
CAACATCATCTCAAAAAGCCATTGTTAGCATGGATGGCCGAGTCATTGAT
GGTAGTAGGATAGAAGTTGAGGACTATGTTCAAAAAGTGGAAAGAAGTAT
CAGCTCTTCATCTCAGGAAGATAACAACGGAAGTGAAGATTATCGTCCAA
TAACTGATTGCAATTTCTACATGCAAGGAAGATGCAAAAAACAGGTTAAT
CAATATCATACAACCACATTAGATCGAATTGATATCTCAAATCTTAGACA
TTTTAAAACTATACTCTATTACTATAGCGTTAGCGTTACAGCATATCGTT
CAAAGGTTTCTATCCTAATTTAATATTCATCTATCTTTAATTCAGGAGGG
TTGCGCTTATCGTCATCCATCAAATACAAAGGCTGAAATATGCAATTCTT
GGAGAGGTGATACATGTAAAAATATCACTTGTCCTTTCTTGCATCCCCCA
AAAAAGAATGGAAGTAAGTACATAGAaagcagaaatatttttttactgaT
TGTAAAGATTTATTattaactttaaatttttttttttaatttctgtcTAA
TAGCCAGCCAAACAGTTCGGACTTTTTTAAATGCCGCCTCAAACGAGAAA
TATGTTggcatatttttattttaactctTAGTCCTGAACTACCTGGGAAG
CATTTTTAATGGGTATCGATAATAAATActcattttttgatgaaataaaa
ataaagtaatttGATTTCAGGTTTGCCCTCAAAGCAATCTTTGCCTACAA
ACACTACTGCATCTCCCAGTGAACCTGCCACTTTGAAAGTCAATACTCCA
GTCGAGGTGACAATTCATTCAAAACAATATCGTGGGATTGTTCGCTGGTG
TGGTTTCATTGAAGAAATGAATAACTCAATGGCCGGAATCGAACTGGTGA
GTTTATCATGAAGTTTATTAAAGGTAGATTCAACCTGGAATATCCTGTTC
TTATATGGGATAATTCGGGTTAACAATAATTTTTGGTTTGGAAACTTGCA
AAGGAAAAGGAATTGAAAGTCGCGATACCGATTGCCGTATCTCTTTTGTC
ATAATACAGGGAGTTTTGAAATGATAGTTTGtacatagaggtataaagaa
agacaggagatgaatttgttggtaattggtcgttaaagtcttttgattcc
ttttatataataaatcaaaagaaattctaggctcgcccgatgaaatacga
ctttttagtagaactcaagtttgctctgaacattcttactatcagcatcg
aagcatgcttctaatatacgagaataaaataaaatttagctccacgaaat
aagtttgcgttcaattttgtcatcaattaaattttgttttgaaaatatat
tttctccagccataaaataaaaagttctttataagcacacacaatttcag
acccaacttgtagacaaaaagtcgctggagaattttggaggaaagtatta
agcaatagagttcaccttaaagaaaatgttgatcgaaaaatcttatcatt
tgatgaaggattgcaaagtttacaggcccttttttagtccaaatattttc
ttacgccgatgtcagaaacaatgaatctcgtctcatcttatttccgaCAC
TTGAGTTAGCCAAAAAGATtacacctatcaacaaaagagctcattaaaat
gcacgatatatgagattatgagcatgcatacctcgtaatttttttaatcg
tagggcgaacatggttacaatagcatacttctcctgtttctttatacctc
catggtttgTATTACACTTTTTATCTACTCTATAAAATCGcccaatttaa
tttttttttttgaacagGACAAAGCAATTGACGGAGGGTGTAATGGTAAT
TTTCAAgggaagaaatatttttcttgtgcGGAAAGCAGAGGTTATTTTGT
GGTGTCAACCCAATGCAAAAAATTATATACACCTGATATAGGTTTGTAAA
GTAACAATCCGCTTGATGTGTTAATGTTAGTAAAGCTTCGTGTACCTTCA
AAAGAAAGAGATTCTCGTTAAATAAAGTTGTTTTTAGCTACTTCCCATGT
GGAAATAACGCTTTTGATAACGCACATTTAACTTGGAGAGTAGACAAAAT
TATGCTTCAATAAGCgtgtttttatttgtatttcttctttatttcataat
tttctatctTCAATCCTATTGTAATTTTGTATACTCTGTGTGTCATTCTA
GGTTCCCTGTCACTTTTGACACCAACAAAAAAGGACTTTATCTGTGGATT
TTACTTAAAGAATCTATGCATTAACGGGGACAACTGTTCAGCCGTCCACC
CTCCATACAGCCTTCCTTATTGCTGGTACTATCAGATCCAAGGAGAAACG
GAAGTCAGTATATGCCCAAAAGATGTTACAGAAGCGATCGAGGAAAAATT
TCGAGACGTTAAATCTACGGATTTGTATGTAGctattttatttctattta
taCTTTTAGGCTTAATTGAAAATGGGGAGGATGCCATTAGTTTGCGCGCC
TTTTTAGATCCTTTTCATACGAAATGGTATTTTTAGGATCacgaaaaaca
taaaaacaattttgcttaaaaatcttattttgattgaaattaCCTTTGAT
AATAGGTTCGattcttcatttaaattttgactaaaaactgtttttgatta
attttgtcattttgggtAGGTAAAAGTTTTCAGTCTTTAAGTATAATTTT
TGATTGAGTGaacaaattttaaagttttaaataccaaaatttaagttgag
CTTGCCTCTATGGAATAattaaaaatctacaaaaacatCTTTATCCTCTC
AATATCTTGACAAAAACATGTATCCATTTTCTTGGCGCACCAAGTAAAGT
TCGTGAAAACTGTGAAAGGATGTTTCTTTTTTCTGCATTGGTAACGGGGA
AGTGTGAAATAAGGGCCTTCCCGTAAAGgtataacaaaaagaaaaaccgT
TCTGGACGGggaattagagaaaaaaagaaggaaatttcattgatttttcg
aagttttCCTTTAAAGTATTAGAATTATAAAACTTTCTTCTGTAAtctat
ttcaaatttctttacgAATTTGCTATAACCTTGAAGAACtttttaccgtt
ttattatcttaaatatcgggtttttatttttatgtatgTAGTGCTACGTC
CAATTTTCGCGTCAATTTCGAAGACCTGACTCAATCAAGATACAGTGATT
TGAAAGCAACATTTAAGCGTATATCAACGCCTTCTACTGCATTATCTAAA
GGAACAAACGAACCCTTGACAACTACATGGAAATGGTATTGGTACGACGA
CGAAACGTGGCACGAATATCATTTACCTGGAACGGTATTTTTAGATTTGT
ATTTTGTCCTTGGTGTcgatagcctatactagacgtcatcTGCGTtcttt
ctacgcaattaacgtctattccactttgtgactttttcgaatgctttgag
cccaggttttctagccagtaccttcccacaaaccaaattttttctttgtt
ttatggtcagttacACTTTGAAGCGTTTGTCGAGAGTCTTCGCTCTGCGG
TGGAGGGTGACGTCGATTCCGTGCGGAGTGCATAAAGGGGAGAAAACACG
GAACTCGAAAGAAAAGACTGGAATGGACAGCCGAATAGGATTTTTTCATG
GAGAGGTTACGCGTCGATGTCAAATCTAGTCTTAATTTTAGagatccgtg
cataaaatcaaaacaaaaaaatcctcGGGATTTTGATACAGCCCTTATAA
CGAAAGAACTGTAGAAGCAAAAAAGTCTCCAAGCTGCTCCAATTAATGGT
ATTATCAAGAGAGGCTCTTAATTTAATAAAGGAAACCCCCTTTCTTCAAA
GGTTTTCTTTCTTGCAGAGAAACaaccaaaatcaaagaaattctcAACAC
TAGCCATAGCCAGTCtttgaaacagggatgtaaaaTAACGAGGATTCCAA
GACTAGTATTTGATGGAATAAGTCGATCTCGTGCAATTTCAAGATACAGA
Ggtacaaaatagaaatagatacttgctacatcattatttacttaaaaatt
tatcaaagttTATAAAGTTGTAATAAAACCATGACCATGACTGtaaaatc
ttaatatataatatataaaggaaagttagataaaaataataaaatttagg
TAGATTCCTTCCACAATTCAAAACCttgcgataaaaaagcggttttcatC
TAACAGGCtaaggttttcgggctccaaacattcaattttttgacgtcact
ttaaacttttgaagcccttgcagtaaaaaaaaattgaatttacgTCAAAa
tacttgaaaggcttctattttcaaaaatcgtcaaagtggaactcactaaa
aaaaatcccggtttttagtgaggtgctcgctatgaTGTCGATTGCTTTTT
GACTCTCTCTCTTTCACGGCAATCTTTCCAGTACCTcccactccaaaacc
atccacaCTGAACCTTTTGAgattggaacaatagaattcttATCCCCTTG
GGATTTTAATGGACATTTTTATCCCGACTAtgggaaaaggttccaccggg
gctgcgaaACAGAGGTGTAGCAAACATACCCTTGGAAAAGTATGTTTGGA
TAAATATGTTTTCCTTAGTGTCGATTGCCTTTTGATTACCTATTCACGAC
AACTTTTCCAGTATCTCGGTTGATTAGAATTCAGTGGAAAAACTGAGAGT
TTTGTGGAGAAGTTAAATTGAGAAATTGTTAGATACTTCCTAAAGACCAG
TCTCCACTTTCGCACGAAaagagcgaaaactttttaacggttttgtaagg
tcattggtcggttgaaaaacaAAGCAATTCCATTGAGTAAGTCTGATGTA
ACGCTAAcggttttaaactttttattttttgctcgaaacttttttaatga
cttaatcttttCTGCAGGCAAAAACGattgacaaaaagttttcgctcatt
ttcgCGTGAAAGTGGAAACCGGTCTAAAGTCAATTGTAAGTAATATTATA
AATAGGATTTTTGGGCCATCTTCTTACAAATTTCGATATATGTTTATCAA
AttgctattttctttgatttttttaggcTACGTCTGAAATGATAGAAAAT
AAATACGACATGTTCAAGAACCACGATGGTCCAACGAAAATGGATTTCAG
AACGGCTCAATTTTATTACAGTTTGAGATTCAAATTAATgaatcaaaaaa
atctcaagACAAATAAAAGAAGATGTGTTCGAAGAAGACCAGCTCCATTT
CAAAATGAAAGGTACATTAGAATTCCGAATTACAAAGTTTTAAGTATTTC
TCCACACCTAGGGATAGTCAAGAGTCTCGCCGTTTTGCATATAGGATTTG
ACTTCCCTGACTGAGATTCTACTTAATCTTCCCTAAAAATGTCTGCTATT
TTTCCTAGGATAGCCGGCATGACATTAAAAAGGGTAAAATCTAAAATCGT
AAAATCTGGTGTTGGCTTAATATTGGAAACTGTCCAACTTTCcaaagctc
atttttcaactacccggaGTCCTAGtttttttCCGGTGATAGAATTAAAT
GCAAAACGACGGGGCTGTTCGCGATGGAATTTATGTGTAGGTATATCTTA
AGATATGTTACGGCAGGTAACAGCAGCAATTAAAAGTAGTTAATTTCTTT
CTTCCTCGCGTATAATAAGAATAAAAGCTAAGTAGAATGTTCTTCCAAAC
TTTTTCAGCTTTCAGTGCAGCATCTTAATAGATGAGACTTAAGCAAGAAT
AGGAAGCAATATGAAAGGTTTGTTTAGACTGAAAAGACTATCTAATAATC
CCTTCaacaatgtttttttgtttctacCATAAAAGTTAAAGAGTAGTTAT
GAAAGtgatgttttttgaaattcattttttagtaAACAGAGGACTCTGTC
TGCTTCATTAGACGATTTTCCAGTTCACTGGACTTCCGCCCCAGTCACCG
GATATATTGCTATTCCGGTCAAAAATGACGTCCGTAGTAAAATTGAAAGA
GATTTTGCTCAAACGATGGAAGGCCGAATGAActacaatataatttcagt
cGAAGAAATTTGTAACAGACAGCTCTATCGACAATATGTAAGGTCAGTAA
ATATTACCtcattacacgaatattacacgtcattttattaacacgaattt
aaaaattttgtgttaataaaaacccgcccccttaattaaaactaGCCGTG
GTCTCCTTggaaaagcaataaaattcgtgttaattttttgcatgttaaTT
TCAAGGTCGTTGATTATGTGTCTACTTActttcgtgtaataaggtatctC
ATTTCATGTCTTTCATACCTTAAATATGACACACATTTTACTATAAGCAA
GGTCAGAACGCCCCATTCGCCACATACCTTTAGGGAAGAGCGTGACGTGT
ACAGAATTGATGATCTGTTGTGTGTTCAGACAACCAGCGTGTGTACAAAT
TATTTCAAACATGTTTATCTCCGTTTGACACGGGTGCTATTAGTGTTATG
GTATTACTTGACGCTTCTTTATTAAGATGTTAAGTGCCAcaacatttttt
ttccatttttaattaAACACCATAGCAAGAAGAAAAACATGGAGGAAAGC
AATAAAGGTCAGGTCAAGGAGATGCAACTTTGGCATGGCACTCGAAACGA
TATTGTCGAGAAAATATGTCAACAAAATTTCGATTGGCGTATGGTTGAAA
AGCATAGCTTTGGTAAAGGAAGTTATTTTGCTAAGAAGACTTCCTACAGC
TGCTCCTACACAAGTTCTGATCCTGTATCGGGAATTTGCTCAATGTTTTA
CGCAGACGTGTTGGTTGGTTACTGTGCAAaggtaaaattgatttttttag
ttAACATTTCATTGTACTGTTATACTTACCCAATTAAGTTCTGATTCCTT
GTTTGTTTAATCGGCATATGAGAAATGGaagataaatttgaaataaaaca
gCCACAATGACGGCTGCAAACTCCGataattgtcatttttgaatagCCAA
CCATTATGCAAACATCGtggtcagcctttcttaatatatctaacataaaa
ttttgataagaaAAAGATTATATTTGTATTACTTTTCTTATCACAGGGTT
GTTCAACTTACACACGACCACCAGAACGAGAGAAGAACATTCTATATGAC
AGCTGTGTTAATGACATCATAGATCCGtcaattttcgtcatttttgaaCG
CGATCAATTCTATCCAAGATATTTGATTAAGTACAAACGCTCAATTTtga
gaagatgaaaaatgagaGTAACATCATCCCTGTGTAAAGGCCTTAGGTTA
CGTCAATGGTTGGCGCTAGAACATTTGCGAGTTCATATATTCGAGACaaa
tcgaaggagacggtataTAACGGTATGAtaataaagcaaagttgacatgt
caccaaaatcaccgtccactttggttgacgacggtaaaaacaccaaaata
ataCCGTCATCTGTTTAGGTTAGCAAAGGCAATTTTAGGCTGCACGCATA
CCATCTGACACGTTTTGATATAAGGGATGTGTATCGCGTATAAAAGcgcc
gtccgagagttaccgccgtttttttgtttttgagttttagaaacttgatt
agcttgattagtaagtttgAGGAATCCTCAAGGTTCATtagattttaatt
aaaaaatttgaatggctagaaGTTAATAAAATCATTGGATTTCTgaagtt
ttttaagaaaattgcaaCAGGTTACCCCAAAattggggtaactctcggac
aggCACTTTATACACGATACGTTTTCTctttatcaaaacatatcagaggg
gatgcgtgtcACATAAGGTGaaatagagccgtacatcaactatcgacttt
tgCGTTTTGCGTGGAATTCGCTTACCGttgccctcgatatcctccaaTAC
GTAAACTCACTATTATCCGGTAGTCTGGCGCTATCATTAAAATTCAAGAG
GCCGACAATGTACAGGGAACGAGCCTAGTACAAGTGGCGATTGTAAAAGG
ATTTCAGAACTGTGAATAGCTCCAGTTTTGTACAAGTTTATGAATCGACA
CTCATATCCTCATCATGATTATGATGCTTCagattaaaatttctttattt
catcTTTACGATAACTTTATTAAGGaatcattttgttttatttctttaat
ttcaCTCGGAAAATGGAATACTGACTATAGCCTGCTTTCCACGTACATGT
ACAGTATAAAAGTATAAAAGGaatggatttaatttggcggatgaaggaca
tttttgCGTCCAAAAACGCCATTAATtaggaaaaacctgttttaaagcct
gaaacaGCACACAttgggggaataaatagagcaatttgaatttggcggat
gacgggAAAGTTATtaaattttagcgggaacttaatttggcatattttga
ccaaatccgccaaattaagttcccgccaaaatttcttt

Coding sequence (CDS) from alignment at sc0000079_pilon:101185..109922+

>MSTRG.11046.3.p2 ID=MSTRG.11046.3.p2|Name=MSTRG.11046.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000079_pilon:101185..109922+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGGAAAGCAATAAAGGTCAGGTCAAGGAGATGCAACTTTGGCATGG
CACTCGAAACGATATTGTCGAGAAAATATGTCAACAAAATTTCGATTGGC
GTATGGTTGAAAAGCATAGCTTTGGTAAAGGAAGTTATTTTGCTAAGAAG
ACTTCCTACAGCTGCTCCTACACAAGTTCTGATCCTGTATCGGGAATTTG
CTCAATGTTTTACGCAGACGTGTTGGTTGGTTACTGTGCAAagGGTTGTT
CAACTTACACACGACCACCAGAACGAGAGAAGAACATTCTATATGACAGC
TGTGTTAATGACATCATAGATCCGtcaattttcgtcatttttgaaCGCGA
TCAATTCTATCCAAGATATTTGATTAAGTACAAACGCTCAATTTtgagaa
gatgaATGGAGGAAAGCAATAAAGGTCAGGTCAAGGAGATGCAACTTTGG
CATGGCACTCGAAACGATATTGTCGAGAAAATATGTCAACAAAATTTCGA
TTGGCGTATGGTTGAAAAGCATAGCTTTGGTAAAGGAAGTTATTTTGCTA
AGAAGACTTCCTACAGCTGCTCCTACACAAGTTCTGATCCTGTATCGGGA
ATTTGCTCAATGTTTTACGCAGACGTGTTGGTTGGTTACTGTGCAAagGG
TTGTTCAACTTACACACGACCACCAGAACGAGAGAAGAACATTCTATATG
ACAGCTGTGTTAATGACATCATAGATCCGtcaattttcgtcatttttgaa
CGCGATCAATTCTATCCAAGATATTTGATTAAGTACAAACGCTCAATTTt
gagaagatga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11046MSTRG.11046Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11046.3.p2MSTRG.11046.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11046.3.p2.exon1MSTRG.11046.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon2MSTRG.11046.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon3MSTRG.11046.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon4MSTRG.11046.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon5MSTRG.11046.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon6MSTRG.11046.3.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon7MSTRG.11046.3.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon8MSTRG.11046.3.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon9MSTRG.11046.3.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.3.p2.exon10MSTRG.11046.3.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:101185..109922 +