MSTRG.11046.2.p2 (mRNA) -

Overview
NameMSTRG.11046.2.p2
Unique NameMSTRG.11046.2.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:101117..109922+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11046.2.p2 ID=MSTRG.11046.2.p2|Name=MSTRG.11046.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8806bp|location=Sequence derived from alignment at sc0000079_pilon:101117..109922+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaagatccatcaaaattttcagCTGATCCTTCTTCTACCCTTATGTAA
AagaattcattttcttttagaGTCCATAGAgtttgagaaaatcaagttaa
aagaaaagaatctttttgtGATGTACCTTGTATAAGATTTAACAACCTGT
ATTTCCAGCATCATCGCCACATCCTCATCCAGTTAATGTTCAACAGAAAA
CGCAGACCAGCTTTCCAGTTGTGATCAAATCACTCAGtaaacaaacaaat
gaaaacacattatttcataatttcaaaagatttggaGTCATCATTCCTAA
TGGTGtaactattttgaaaaataacgatGGAACTTCAAAGTGTATGGGCT
ATGTTAATTATATCAACCCAACATCATCTCAAAAAGCCATTGTTAGCATG
GATGGCCGAGTCATTGATGGTAGTAGGATAGAAGTTGAGGACTATGTTCA
AAAAGTGGAAAGAAGTATCAGCTCTTCATCTCAGGAAGATAACAACGGAA
GTGAAGATTATCGTCCAATAACTGATTGCAATTTCTACATGCAAGGAAGA
TGCAAAAAACAGGTTAATCAATATCATACAACCACATTAGATCGAATTGA
TATCTCAAATCTTAGACATTTTAAAACTATACTCTATTACTATAGCGTTA
GCGTTACAGCATATCGTTCAAAGGTTTCTATCCTAATTTAATATTCATCT
ATCTTTAATTCAGGAGGGTTGCGCTTATCGTCATCCATCAAATACAAAGG
CTGAAATATGCAATTCTTGGAGAGGTGATACATGTAAAAATATCACTTGT
CCTTTCTTGCATCCCCCAAAAAAGAATGGAAGTAAGTACATAGAaagcag
aaatatttttttactgaTTGTAAAGATTTATTattaactttaaatttttt
tttttaatttctgtcTAATAGCCAGCCAAACAGTTCGGACTTTTTTAAAT
GCCGCCTCAAACGAGAAATATGTTggcatatttttattttaactctTAGT
CCTGAACTACCTGGGAAGCATTTTTAATGGGTATCGATAATAAATActca
ttttttgatgaaataaaaataaagtaatttGATTTCAGGTTTGCCCTCAA
AGCAATCTTTGCCTACAAACACTACTGCATCTCCCAGTGAACCTGCCACT
TTGAAAGTCAATACTCCAGTCGAGGTGACAATTCATTCAAAACAATATCG
TGGGATTGTTCGCTGGTGTGGTTTCATTGAAGAAATGAATAACTCAATGG
CCGGAATCGAACTGGTGAGTTTATCATGAAGTTTATTAAAGGTAGATTCA
ACCTGGAATATCCTGTTCTTATATGGGATAATTCGGGTTAACAATAATTT
TTGGTTTGGAAACTTGCAAAGGAAAAGGAATTGAAAGTCGCGATACCGAT
TGCCGTATCTCTTTTGTCATAATACAGGGAGTTTTGAAATGATAGTTTGt
acatagaggtataaagaaagacaggagatgaatttgttggtaattggtcg
ttaaagtcttttgattccttttatataataaatcaaaagaaattctaggc
tcgcccgatgaaatacgactttttagtagaactcaagtttgctctgaaca
ttcttactatcagcatcgaagcatgcttctaatatacgagaataaaataa
aatttagctccacgaaataagtttgcgttcaattttgtcatcaattaaat
tttgttttgaaaatatattttctccagccataaaataaaaagttctttat
aagcacacacaatttcagacccaacttgtagacaaaaagtcgctggagaa
ttttggaggaaagtattaagcaatagagttcaccttaaagaaaatgttga
tcgaaaaatcttatcatttgatgaaggattgcaaagtttacaggcccttt
tttagtccaaatattttcttacgccgatgtcagaaacaatgaatctcgtc
tcatcttatttccgaCACTTGAGTTAGCCAAAAAGATtacacctatcaac
aaaagagctcattaaaatgcacgatatatgagattatgagcatgcatacc
tcgtaatttttttaatcgtagggcgaacatggttacaatagcatacttct
cctgtttctttatacctccatggtttgTATTACACTTTTTATCTACTCTA
TAAAATCGcccaatttaatttttttttttgaacagGACAAAGCAATTGAC
GGAGGGTGTAATGGTAATTTTCAAgggaagaaatatttttcttgtgcGGA
AAGCAGAGGTTATTTTGTGGTGTCAACCCAATGCAAAAAATTATATACAC
CTGATATAGGTTTGTAAAGTAACAATCCGCTTGATGTGTTAATGTTAGTA
AAGCTTCGTGTACCTTCAAAAGAAAGAGATTCTCGTTAAATAAAGTTGTT
TTTAGCTACTTCCCATGTGGAAATAACGCTTTTGATAACGCACATTTAAC
TTGGAGAGTAGACAAAATTATGCTTCAATAAGCgtgtttttatttgtatt
tcttctttatttcataattttctatctTCAATCCTATTGTAATTTTGTAT
ACTCTGTGTGTCATTCTAGGTTCCCTGTCACTTTTGACACCAACAAAAAA
GGACTTTATCTGTGGATTTTACTTAAAGAATCTATGCATTAACGGGGACA
ACTGTTCAGCCGTCCACCCTCCATACAGCCTTCCTTATTGCTGGTACTAT
CAGATCCAAGGAGAAACGGAAGTCAGTATATGCCCAAAAGATGTTACAGA
AGCGATCGAGGAAAAATTTCGAGACGTTAAATCTACGGATTTGTATGTAG
ctattttatttctatttataCTTTTAGGCTTAATTGAAAATGGGGAGGAT
GCCATTAGTTTGCGCGCCTTTTTAGATCCTTTTCATACGAAATGGTATTT
TTAGGATCacgaaaaacataaaaacaattttgcttaaaaatcttattttg
attgaaattaCCTTTGATAATAGGTTCGattcttcatttaaattttgact
aaaaactgtttttgattaattttgtcattttgggtAGGTAAAAGTTTTCA
GTCTTTAAGTATAATTTTTGATTGAGTGaacaaattttaaagttttaaat
accaaaatttaagttgagCTTGCCTCTATGGAATAattaaaaatctacaa
aaacatCTTTATCCTCTCAATATCTTGACAAAAACATGTATCCATTTTCT
TGGCGCACCAAGTAAAGTTCGTGAAAACTGTGAAAGGATGTTTCTTTTTT
CTGCATTGGTAACGGGGAAGTGTGAAATAAGGGCCTTCCCGTAAAGgtat
aacaaaaagaaaaaccgTTCTGGACGGggaattagagaaaaaaagaagga
aatttcattgatttttcgaagttttCCTTTAAAGTATTAGAATTATAAAA
CTTTCTTCTGTAAtctatttcaaatttctttacgAATTTGCTATAACCTT
GAAGAACtttttaccgttttattatcttaaatatcgggtttttattttta
tgtatgTAGTGCTACGTCCAATTTTCGCGTCAATTTCGAAGACCTGACTC
AATCAAGATACAGTGATTTGAAAGCAACATTTAAGCGTATATCAACGCCT
TCTACTGCATTATCTAAAGGAACAAACGAACCCTTGACAACTACATGGAA
ATGGTATTGGTACGACGACGAAACGTGGCACGAATATCATTTACCTGGAA
CGGTATTTTTAGATTTGTATTTTGTCCTTGGTGTcgatagcctatactag
acgtcatcTGCGTtctttctacgcaattaacgtctattccactttgtgac
tttttcgaatgctttgagcccaggttttctagccagtaccttcccacaaa
ccaaattttttctttgttttatggtcagttacACTTTGAAGCGTTTGTCG
AGAGTCTTCGCTCTGCGGTGGAGGGTGACGTCGATTCCGTGCGGAGTGCA
TAAAGGGGAGAAAACACGGAACTCGAAAGAAAAGACTGGAATGGACAGCC
GAATAGGATTTTTTCATGGAGAGGTTACGCGTCGATGTCAAATCTAGTCT
TAATTTTAGagatccgtgcataaaatcaaaacaaaaaaatcctcGGGATT
TTGATACAGCCCTTATAACGAAAGAACTGTAGAAGCAAAAAAGTCTCCAA
GCTGCTCCAATTAATGGTATTATCAAGAGAGGCTCTTAATTTAATAAAGG
AAACCCCCTTTCTTCAAAGGTTTTCTTTCTTGCAGAGAAACaaccaaaat
caaagaaattctcAACACTAGCCATAGCCAGTCtttgaaacagggatgta
aaaTAACGAGGATTCCAAGACTAGTATTTGATGGAATAAGTCGATCTCGT
GCAATTTCAAGATACAGAGgtacaaaatagaaatagatacttgctacatc
attatttacttaaaaatttatcaaagttTATAAAGTTGTAATAAAACCAT
GACCATGACTGtaaaatcttaatatataatatataaaggaaagttagata
aaaataataaaatttaggTAGATTCCTTCCACAATTCAAAACCttgcgat
aaaaaagcggttttcatCTAACAGGCtaaggttttcgggctccaaacatt
caattttttgacgtcactttaaacttttgaagcccttgcagtaaaaaaaa
attgaatttacgTCAAAatacttgaaaggcttctattttcaaaaatcgtc
aaagtggaactcactaaaaaaaatcccggtttttagtgaggtgctcgcta
tgaTGTCGATTGCTTTTTGACTCTCTCTCTTTCACGGCAATCTTTCCAGT
ACCTcccactccaaaaccatccacaCTGAACCTTTTGAgattggaacaat
agaattcttATCCCCTTGGGATTTTAATGGACATTTTTATCCCGACTAtg
ggaaaaggttccaccggggctgcgaaACAGAGGTGTAGCAAACATACCCT
TGGAAAAGTATGTTTGGATAAATATGTTTTCCTTAGTGTCGATTGCCTTT
TGATTACCTATTCACGACAACTTTTCCAGTATCTCGGTTGATTAGAATTC
AGTGGAAAAACTGAGAGTTTTGTGGAGAAGTTAAATTGAGAAATTGTTAG
ATACTTCCTAAAGACCAGTCTCCACTTTCGCACGAAaagagcgaaaactt
tttaacggttttgtaaggtcattggtcggttgaaaaacaAAGCAATTCCA
TTGAGTAAGTCTGATGTAACGCTAAcggttttaaactttttattttttgc
tcgaaacttttttaatgacttaatcttttCTGCAGGCAAAAACGattgac
aaaaagttttcgctcattttcgCGTGAAAGTGGAAACCGGTCTAAAGTCA
ATTGTAAGTAATATTATAAATAGGATTTTTGGGCCATCTTCTTACAAATT
TCGATATATGTTTATCAAAttgctattttctttgatttttttaggcTACG
TCTGAAATGATAGAAAATAAATACGACATGTTCAAGAACCACGATGGTCC
AACGAAAATGGATTTCAGAACGGCTCAATTTTATTACAGTTTGAGATTCA
AATTAATgaatcaaaaaaatctcaagACAAATAAAAGAAGATGTGTTCGA
AGAAGACCAGCTCCATTTCAAAATGAAAGGTACATTAGAATTCCGAATTA
CAAAGTTTTAAGTATTTCTCCACACCTAGGGATAGTCAAGAGTCTCGCCG
TTTTGCATATAGGATTTGACTTCCCTGACTGAGATTCTACTTAATCTTCC
CTAAAAATGTCTGCTATTTTTCCTAGGATAGCCGGCATGACATTAAAAAG
GGTAAAATCTAAAATCGTAAAATCTGGTGTTGGCTTAATATTGGAAACTG
TCCAACTTTCcaaagctcatttttcaactacccggaGTCCTAGttttttt
CCGGTGATAGAATTAAATGCAAAACGACGGGGCTGTTCGCGATGGAATTT
ATGTGTAGGTATATCTTAAGATATGTTACGGCAGGTAACAGCAGCAATTA
AAAGTAGTTAATTTCTTTCTTCCTCGCGTATAATAAGAATAAAAGCTAAG
TAGAATGTTCTTCCAAACTTTTTCAGCTTTCAGTGCAGCATCTTAATAGA
TGAGACTTAAGCAAGAATAGGAAGCAATATGAAAGGTTTGTTTAGACTGA
AAAGACTATCTAATAATCCCTTCaacaatgtttttttgtttctacCATAA
AAGTTAAAGAGTAGTTATGAAAGtgatgttttttgaaattcattttttag
taAACAGAGGACTCTGTCTGCTTCATTAGACGATTTTCCAGTTCACTGGA
CTTCCGCCCCAGTCACCGGATATATTGCTATTCCGGTCAAAAATGACGTC
CGTAGTAAAATTGAAAGAGATTTTGCTCAAACGATGGAAGGCCGAATGAA
ctacaatataatttcagtcGAAGAAATTTGTAACAGACAGCTCTATCGAC
AATATGTAAGGTCAGTAAATATTACCtcattacacgaatattacacgtca
ttttattaacacgaatttaaaaattttgtgttaataaaaacccgccccct
taattaaaactaGCCGTGGTCTCCTTggaaaagcaataaaattcgtgtta
attttttgcatgttaaTTTCAAGGTCGTTGATTATGTGTCTACTTActtt
cgtgtaataaggtatctCATTTCATGTCTTTCATACCTTAAATATGACAC
ACATTTTACTATAAGCAAGGTCAGAACGCCCCATTCGCCACATACCTTTA
GGGAAGAGCGTGACGTGTACAGAATTGATGATCTGTTGTGTGTTCAGACA
ACCAGCGTGTGTACAAATTATTTCAAACATGTTTATCTCCGTTTGACACG
GGTGCTATTAGTGTTATGGTATTACTTGACGCTTCTTTATTAAGATGTTA
AGTGCCAcaacattttttttccatttttaattaAACACCATAGCAAGAAG
AAAAACATGGAGGAAAGCAATAAAGGTCAGGTCAAGGAGATGCAACTTTG
GCATGGCACTCGAAACGATATTGTCGAGAAAATATGTCAACAAAATTTCG
ATTGGCGTATGGTTGAAAAGCATAGCTTTGGTAAAGGAAGTTATTTTGCT
AAGAAGACTTCCTACAGCTGCTCCTACACAAGTTCTGATCCTGTATCGGG
AATTTGCTCAATGTTTTACGCAGACGTGTTGGTTGGTTACTGTGCAAagg
taaaattgatttttttagttAACATTTCATTGTACTGTTATACTTACCCA
ATTAAGTTCTGATTCCTTGTTTGTTTAATCGGCATATGAGAAATGGaaga
taaatttgaaataaaacagCCACAATGACGGCTGCAAACTCCGataattg
tcatttttgaatagCCAACCATTATGCAAACATCGtggtcagcctttctt
aatatatctaacataaaattttgataagaaAAAGATTATATTTGTATTAC
TTTTCTTATCACAGGGTTGTTCAACTTACACACGACCACCAGAACGAGAG
AAGAACATTCTATATGACAGCTGTGTTAATGACATCATAGATCCGtcaat
tttcgtcatttttgaaCGCGATCAATTCTATCCAAGATATTTGATTAAGT
ACAAACGCTCAATTTtgagaagatgaaaaatgagaGTAACATCATCCCTG
TGTAAAGGCCTTAGGTTACGTCAATGGTTGGCGCTAGAACATTTGCGAGT
TCATATATTCGAGACaaatcgaaggagacggtataTAACGGTATGAtaat
aaagcaaagttgacatgtcaccaaaatcaccgtccactttggttgacgac
ggtaaaaacaccaaaataataCCGTCATCTGTTTAGGTTAGCAAAGGCAA
TTTTAGGCTGCACGCATACCATCTGACACGTTTTGATATAAGGGATGTGT
ATCGCGTATAAAAGcgccgtccgagagttaccgccgtttttttgtttttg
agttttagaaacttgattagcttgattagtaagtttgAGGAATCCTCAAG
GTTCATtagattttaattaaaaaatttgaatggctagaaGTTAATAAAAT
CATTGGATTTCTgaagttttttaagaaaattgcaaCAGGTTACCCCAAAa
ttggggtaactctcggacaggCACTTTATACACGATACGTTTTCTcttta
tcaaaacatatcagaggggatgcgtgtcACATAAGGTGaaatagagccgt
acatcaactatcgacttttgCGTTTTGCGTGGAATTCGCTTACCGttgcc
ctcgatatcctccaaTACGTAAACTCACTATTATCCGGTAGTCTGGCGCT
ATCATTAAAATTCAAGAGGCCGACAATGTACAGGGAACGAGCCTAGTACA
AGTGGCGATTGTAAAAGGATTTCAGAACTGTGAATAGCTCCAGTTTTGTA
CAAGTTTATGAATCGACACTCATATCCTCATCATGATTATGATGCTTCag
attaaaatttctttatttcatcTTTACGATAACTTTATTAAGGaatcatt
ttgttttatttctttaatttcaCTCGGAAAATGGAATACTGACTATAGCC
TGCTTTCCACGTACATGTACAGTATAAAAGTATAAAAGGaatggatttaa
tttggcggatgaaggacatttttgCGTCCAAAAACGCCATTAATtaggaa
aaacctgttttaaagcctgaaacaGCACACAttgggggaataaatagagc
aatttgaatttggcggatgacgggAAAGTTATtaaattttagcgggaact
taatttggcatattttgaccaaatccgccaaattaagttcccgccaaaat
ttcttt

Coding sequence (CDS) from alignment at sc0000079_pilon:101117..109922+

>MSTRG.11046.2.p2 ID=MSTRG.11046.2.p2|Name=MSTRG.11046.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000079_pilon:101117..109922+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGGAAAGCAATAAAGGTCAGGTCAAGGAGATGCAACTTTGGCATGG
CACTCGAAACGATATTGTCGAGAAAATATGTCAACAAAATTTCGATTGGC
GTATGGTTGAAAAGCATAGCTTTGGTAAAGGAAGTTATTTTGCTAAGAAG
ACTTCCTACAGCTGCTCCTACACAAGTTCTGATCCTGTATCGGGAATTTG
CTCAATGTTTTACGCAGACGTGTTGGTTGGTTACTGTGCAAagGGTTGTT
CAACTTACACACGACCACCAGAACGAGAGAAGAACATTCTATATGACAGC
TGTGTTAATGACATCATAGATCCGtcaattttcgtcatttttgaaCGCGA
TCAATTCTATCCAAGATATTTGATTAAGTACAAACGCTCAATTTtgagaa
gatgaATGGAGGAAAGCAATAAAGGTCAGGTCAAGGAGATGCAACTTTGG
CATGGCACTCGAAACGATATTGTCGAGAAAATATGTCAACAAAATTTCGA
TTGGCGTATGGTTGAAAAGCATAGCTTTGGTAAAGGAAGTTATTTTGCTA
AGAAGACTTCCTACAGCTGCTCCTACACAAGTTCTGATCCTGTATCGGGA
ATTTGCTCAATGTTTTACGCAGACGTGTTGGTTGGTTACTGTGCAAagGG
TTGTTCAACTTACACACGACCACCAGAACGAGAGAAGAACATTCTATATG
ACAGCTGTGTTAATGACATCATAGATCCGtcaattttcgtcatttttgaa
CGCGATCAATTCTATCCAAGATATTTGATTAAGTACAAACGCTCAATTTt
gagaagatga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11046MSTRG.11046Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11046.2.p2MSTRG.11046.2.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11046.2.p2.exon1MSTRG.11046.2.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon2MSTRG.11046.2.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon3MSTRG.11046.2.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon4MSTRG.11046.2.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon5MSTRG.11046.2.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon6MSTRG.11046.2.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon7MSTRG.11046.2.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon8MSTRG.11046.2.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon9MSTRG.11046.2.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11046.2.p2.exon10MSTRG.11046.2.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:101117..109922 +