MSTRG.11040.1.p1 (mRNA) -

Overview
NameMSTRG.11040.1.p1
Unique NameMSTRG.11040.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:9333..14285+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11040.1.p1 ID=MSTRG.11040.1.p1|Name=MSTRG.11040.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4953bp|location=Sequence derived from alignment at sc0000079_pilon:9333..14285+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTGCTCCACAATTTAGTAGAGCCTGTGGTCTTGATGTAAACAATCCCGC
GTCCagcctttttgttttgatctcgATTTATCTGGTGACTTTTTAGCAAG
AAGTCTCGAtcattcaaattctttttaaacTTCCAAGATGTCGAAGAGAG
GTGAGAAGAATATACCTATTTTGCCACTACAAAATCATACCCTATCTATT
TGATCGATGGAtgtattttcatgaaatttacaAAGAGTTACAAATTCATT
TCTCCTGTTAAAGATGAAGTGTTTAATTCGTGAATATGTACGTTCTTTAT
TCAGATAACTTACTTTAATCAAGGCTCTACCTTATAATGCTTCAAATTGT
AATCAACGAAATGTTTTTGTCACATAGCTGGAGGAAGAGTCGGAGGAAAA
TTCCGCATGGCACTTGGCTTGCCCGTTGGGGCTGTCATGAACTGTGCTGA
CAACACTGGTGCCAAAAACTTGTTCGTTATTGCTGTAAATGGTACCCAAG
CTAGATTGAACAGATTGCCTGCTGCTGCCTCAGGAGATCTTTTTGTTGCT
TCAGTCAAGAAGGGTAAACCAGAACTTCGTAAAAAAGGTAATATCATTTG
AATAAATAGAAATGTTTCAGTTGTCTGTTTTtgcctagcctggatatcca
ggctgtaaactatttcacagtctagtttttgatattttatgttctggttt
acagcctggtctccctagagcgatttgcattctcatatgagaatgcagtc
cgcttgcttgcgctcacttcgctaaagccgtaaggatTGATCTACATGGT
GCGGAGcaattctgaaacaaaaataggataatcctccagttgctagtgaa
gatagggctttctgttacacgaaaacatgaaaaagaagaaaacagaggca
agttcattttccaagaaaacatggttggtcatgataatgcatgcaaactt
ttttatggactttggtgtaatctttggatgttttaaatagttttagatct
tgtaagactgctttttattaatttctgttttgctgccctgggttggctag
gaaacatgggttttcactttcattctctagggagaccaagctctataatt
ttagaactttgtatgttgaggtaaattttgttttttctaaaattttgagc
ttggatatccaggctagttttTGCCTAAATGAGTGATTGGGATTGTTGGC
TTCCAACTTATGATCCCGAACTTTTTTGATTGGGATAATGACTTAGATAG
GGGTCACTTACAAATCGAATTTAGGTTTGAAAAACATCAATTGACGATAG
TAGGTGGATGGGTTAaaggttgttgacgtttttttCAAATCCAATCGTGT
TTCTGTTTGATCGCTTCGTCTGTTTTGAAAACAGTTCCTTTTAGACCATG
GCCAGGTACatcaaaacgtttcactttttttcaaaatgtcggtGAATAAA
CATTTGATATCATtctggtcaatttgagggtgctgattctgaatttgaat
gttaccaagcttgaaaatcCGCAGtttttacgtaatttgcaattttttgc
gtttttaggcaaaattgtaagccctgaaaattcatgatttttttttttgg
ggggggggggtcttcaaaatcaagaaagacctataccacatgatagagct
cttcaaactgagcaaaaaaatgtattatatcaaagtctcaactttttgga
cctaccctggtggaggtcctataaattaacctttgtccgttcgtctgttc
gttcgttcgttcgtttgttattagctttcctcatgattggctcattagtt
ttttctgattttttgcacaaagatgcataactataaacccttgaatgtga
cggagcaaattttgggcaaatttgggccaaaaaacgcctaaaaaatgggt
ttttttggactttgtgcctCGAATgggacagagcccaattttcaaaaaag
attttgggcaaatttgggccaaaaaacggctaaaaaatgggttgtTTGGA
CTTTCGCATgtatatctataagaatcactattaataagcatacatcaatg
ttcttagtcaaattactcaattttttttatgagatgttttttttgctcac
gagggcttacttttaaagaatatatgtgtttagacatgtttttatagaaa
agctggccaaattcgatattttttataagcacactatcaattacttaggt
attagcttttctcgagattggctcttttattctttatgattttttgcgca
aagatgcataactataaacccttgaatgtgacggagctcgattcttggaa
aaaaaatttggggtaaatttaGGCTAAAAAGAGATGTTTTTGatgtcttg
aatatgaaagaatatttcaagagcatgaaattttggtttctaaacgtgtt
ttttataagaaacaaacaactaattttaatagatcgtcactatttgtgtt
ctgaatgattgtttaatggtcacgcctatgtagatatcaattatatatgt
gttagatgcataaccaggtaggtccataaaagtatcacttgtcttaatca
aaagttatgggcgtttttgtggtaaaaaagtactataattttgcataaat
tatgcagattgtggggaaatttcctgttttcaatcaatttttgaccataa
aatcgtttataacttttgatctaaagacaaatcagacaattttgaaaact
atttttcagaatctttaaaactttttatcatttttagcttttttcttgTG
CTAGATGTGTAAGTTTCAAgtattaaatttttgaaatcctgattttaaat
ttgttcagTTTGTTGATCTCGTTACTAATAACATTACAAATAATATTGAT
CCTTACAGTATTTTTAGTttgcattgaaaaagaaaagtttcaatattttc
tccaggatttttcgtttttcatactttaaaaaaatgatggaCGTTGTCGT
TGAGAAAAATAATTGCGGAATCAAAAATGAGCCGCAACGGCAACTTCTCT
AATTTTTCACACCTATATGTTATTTCACAAGTTTTGCCGTTCTCGTTGCC
GTTCTCGTTGTGGCTGAGGAAAGTCTCTATTGACCAATGACGCTTATTTG
CTGCCCTGGTGATAAGATTTTGTTCATTGTCAAAAAACCATGTTTTTGGT
TGATAAGATTTTGTTCATTGTCGAATAATGAATTATTAAAGTCTACATTG
CTAGCTGTTTTCTCTTGTATATAAATGCTGTAGTAATTGATGCTTTGATA
ATTAATGCGTTAATAATTCTACTATTTACTCCTTCTAGTTATGCCAGGCG
TAGTTATCCGACAAAGAAAAGCTTTCCGAAGGAAGAATGGCGTCTTCATC
TACTTTGAAGGTAATATTATGCTGagttttactttcattttcagttttgt
AATATGCAATGTTTCTAAAATTATCGATCTTGGAACTGGTAGGAGGTGAT
AGTTTATACTGTATCAAATCAGACTAAttatcaaaaaatcattttaacaa
ATTTGCATACCTTGGCTTGCCTAAGATATAATGGAgagaaaatttccatt
tttgttTCGTTAAATTAAATCTTGGGAAAATTAACCATATTATTATGGTT
ATGGTTATGCCAAccctaaaaaaattttcctttccgGCCCACCGGCTGgg
tgaaattttgttttgtcgtCACCCGACCGCAtttttttAGAACCAAAAAG
ATAACAGATGaaactttcttcttaaaaacCTTTACTCATGACTCATTCAA
ACTGTTAAATCATTCCTATATTacactcttcaaaaagtttgtttatttag
caTGCTTTCTGGACGTTACAGTCAAATAAATAGTGTTATGCATATTAAAT
CAATTTATAGCAACACATTTCTTTCagtgaaagagagaaaaaatataaag
aggACAGAATGTGGGGTAACACTAACAGCCagagagatgatttttttctt
cctaaatcaagaaaaggacaaaaaaaatttttttcccggcCGGCAGCTCT
CATATGGACaggaaacagaaaaacattTTAGGGTCAGCCTAAAGGATTTG
CCTATGTCTGTGAAATTCAGCAAGTGTTTTGTCATCTGAAAGCATGGAAA
CAAGTACTCccatcaaaaaaggaaaaaactgaAGGTGAATTGGTGGGATT
TAACCAAACTATGATTTTCTATTATAGATAATGCTGGAGTCATTGTTAAC
AACAAAGGAGAGATGAAAGGTAGGCTATTAAACTTAACATTCCTCTCTAG
CaaaaaaaTCTAAGAGCATGTTTTGCTGacctcattttgaaatttttctg
atcagacaagtttttctgtattttctgaatgaaatatttttgaaaatcat
ttcatAGTGGTAACATGCTCttagattaaattttttttgatatatGAAAA
TTCCTTAATAATCTGGAAATTATTTCAATAAAACTTGGCTTGGTGTGAAT
TATAAGCATcgttcataagcatataataagcataagctatgTCTGGATGC
TATGAGAACTTGAGcttacacttgcttataaaacaaCATGTATTTGCCTC
CAAgatttatcattatttttctgaaattttgctcAGAATTGCATACTAAA
CAATGCTCAAAATATGACAGCCCAATTTTTTCGTCTATTTTAACAGTCTA
TTTGCAGAAGTTGAACTTGTCTTTGGGATTAATATGGTCTTTGTAACcca
acttatttttatttttaggctcTGCTATCAACGGCCCAGTTGCAAAGGAA
TGTGCGGAACTGTGGCCCAGGATCGCCTCCAATGCTGGAAGTATTCAtta
attggaaaaaaatctttaaaagaatattCATTTGTTTCCAGTATTTACTT
CCCTGTTGAGATCATTGTATAATTAAAGGTCATTGAAACTTGATTATTTG
ACTATTTTAGTGTTTTGGCCGTATTTAactatggaggtataaagaaacag
gag

Coding sequence (CDS) from alignment at sc0000079_pilon:9333..14285+

>MSTRG.11040.1.p1 ID=MSTRG.11040.1.p1|Name=MSTRG.11040.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0000079_pilon:9333..14285+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCGAAGAGAGCTGGAGGAAGAGTCGGAGGAAAATTCCGCATGGCACT
TGGCTTGCCCGTTGGGGCTGTCATGAACTGTGCTGACAACACTGGTGCCA
AAAACTTGTTCGTTATTGCTGTAAATGGTACCCAAGCTAGATTGAACAGA
TTGCCTGCTGCTGCCTCAGGAGATCTTTTTGTTGCTTCAGTCAAGAAGGG
TAAACCAGAACTTCGTAAAAAAGTTATGCCAGGCGTAGTTATCCGACAAA
GAAAAGCTTTCCGAAGGAAGAATGGCGTCTTCATCTACTTTGAAGATAAT
GCTGGAGTCATTGTTAACAACAAAGGAGAGATGAAAGgctcTGCTATCAA
CGGCCCAGTTGCAAAGGAATGTGCGGAACTGTGGCCCAGGATCGCCTCCA
ATGCTGGAAGTATTCAttaaATGTCGAAGAGAGCTGGAGGAAGAGTCGGA
GGAAAATTCCGCATGGCACTTGGCTTGCCCGTTGGGGCTGTCATGAACTG
TGCTGACAACACTGGTGCCAAAAACTTGTTCGTTATTGCTGTAAATGGTA
CCCAAGCTAGATTGAACAGATTGCCTGCTGCTGCCTCAGGAGATCTTTTT
GTTGCTTCAGTCAAGAAGGGTAAACCAGAACTTCGTAAAAAAGTTATGCC
AGGCGTAGTTATCCGACAAAGAAAAGCTTTCCGAAGGAAGAATGGCGTCT
TCATCTACTTTGAAGATAATGCTGGAGTCATTGTTAACAACAAAGGAGAG
ATGAAAGgctcTGCTATCAACGGCCCAGTTGCAAAGGAATGTGCGGAACT
GTGGCCCAGGATCGCCTCCAATGCTGGAAGTATTCAttaaATGTCGAAGA
GAGCTGGAGGAAGAGTCGGAGGAAAATTCCGCATGGCACTTGGCTTGCCC
GTTGGGGCTGTCATGAACTGTGCTGACAACACTGGTGCCAAAAACTTGTT
CGTTATTGCTGTAAATGGTACCCAAGCTAGATTGAACAGATTGCCTGCTG
CTGCCTCAGGAGATCTTTTTGTTGCTTCAGTCAAGAAGGGTAAACCAGAA
CTTCGTAAAAAAGTTATGCCAGGCGTAGTTATCCGACAAAGAAAAGCTTT
CCGAAGGAAGAATGGCGTCTTCATCTACTTTGAAGATAATGCTGGAGTCA
TTGTTAACAACAAAGGAGAGATGAAAGgctcTGCTATCAACGGCCCAGTT
GCAAAGGAATGTGCGGAACTGTGGCCCAGGATCGCCTCCAATGCTGGAAG
TATTCAttaaATGTCGAAGAGAGCTGGAGGAAGAGTCGGAGGAAAATTCC
GCATGGCACTTGGCTTGCCCGTTGGGGCTGTCATGAACTGTGCTGACAAC
ACTGGTGCCAAAAACTTGTTCGTTATTGCTGTAAATGGTACCCAAGCTAG
ATTGAACAGATTGCCTGCTGCTGCCTCAGGAGATCTTTTTGTTGCTTCAG
TCAAGAAGGGTAAACCAGAACTTCGTAAAAAAGTTATGCCAGGCGTAGTT
ATCCGACAAAGAAAAGCTTTCCGAAGGAAGAATGGCGTCTTCATCTACTT
TGAAGATAATGCTGGAGTCATTGTTAACAACAAAGGAGAGATGAAAGgct
cTGCTATCAACGGCCCAGTTGCAAAGGAATGTGCGGAACTGTGGCCCAGG
ATCGCCTCCAATGCTGGAAGTATTCAttaaATGTCGAAGAGAGCTGGAGG
AAGAGTCGGAGGAAAATTCCGCATGGCACTTGGCTTGCCCGTTGGGGCTG
TCATGAACTGTGCTGACAACACTGGTGCCAAAAACTTGTTCGTTATTGCT
GTAAATGGTACCCAAGCTAGATTGAACAGATTGCCTGCTGCTGCCTCAGG
AGATCTTTTTGTTGCTTCAGTCAAGAAGGGTAAACCAGAACTTCGTAAAA
AAGTTATGCCAGGCGTAGTTATCCGACAAAGAAAAGCTTTCCGAAGGAAG
AATGGCGTCTTCATCTACTTTGAAGATAATGCTGGAGTCATTGTTAACAA
CAAAGGAGAGATGAAAGgctcTGCTATCAACGGCCCAGTTGCAAAGGAAT
GTGCGGAACTGTGGCCCAGGATCGCCTCCAATGCTGGAAGTATTCAttaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11040MSTRG.11040Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11040.1.p1MSTRG.11040.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11040.1.p1.exon1MSTRG.11040.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11040.1.p1.exon2MSTRG.11040.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11040.1.p1.exon3MSTRG.11040.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11040.1.p1.exon4MSTRG.11040.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11040.1.p1.exon5MSTRG.11040.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:9333..14285 +