MSTRG.10875.2.p1 (mRNA) -

Overview
NameMSTRG.10875.2.p1
Unique NameMSTRG.10875.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000077_pilon:568830..579561+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10875.2.p1 ID=MSTRG.10875.2.p1|Name=MSTRG.10875.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=10732bp|location=Sequence derived from alignment at sc0000077_pilon:568830..579561+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAGATGATGTTGAAAAGTAGAAAAAGTCTATGGGATGAAATAcctttat caacattttctcTGCTACTCCTGGAGGAAACCCAAGTTTATCATCTTTTG AATGCATCAATTGGAAAAAGTCAGTACGTCGggacaagaaataaaaaata gaatcTAAAAAAGGTTCAATCTTTCCACAATGTTGCAAAATCCCCAAGAA AACATCATCAAATTTAACCATTTCCTCGTTTGATAAGGTCATGATTTCTC TCTCTTCATTCAAGCTTGATCAACAGTGAAATAATGAAGAAGGTAGCGAC AACAAAAGGAGAAAATTGAGTAGAGAAAATGACAGAACAGAATGAGATGT ATTTCGATTTTCGATTCTCTGAAATTTTGGAATCGAAAAGTGATCAAGTT TAGTTTACTGGGCAACtgactttcgttttctcaattTTCCCGCCAAATTA GCCTTGCCTCCACTAGCAGTTTTACGGGCTGTTTCTCTTTTGCGTGGCAG CTCGGTGTGATTATTCGAAGTAATCTTAAAGACATTTATTGAAACTACCT GTCCTTTTCGCCATCTTGACAAGAAGGTTCGAGATTTTAGCTAACTGTTC TTGTTTTGAATCTTGGAATTGCTTCGTCATCGTCAATATAGTATAAGAAT GCTTCGagtaaaataaagtttgatCATATTTGATGCTACTTTcggtttta tttttgaatattatACATTGACTTTCTCTTATATTTCGTCTTAGATCAAG ATGGGTCGCCGTCCAGCTAGGTGGTAAGTGAACTACGAATTATATAAATC GTTTACTTCGAAAAGTCTACTTGATGAGCtttataggccatttcacggtc gaaatggatcatgggtaatcaggaattgactagacgcaaaaatcttcaat ttttttcaaaactttggaccaatagtaagtcgtcattagcgcgcagtcgt cctgattacccattacgctttgcgagtgtgaaatggcctatgatGGACAA AATCCAACAGTGCCAGACAGTTTACTTCACGAAATGACAATAAGAAGAAG CATaacccaaaaataaacatttccttgGAAGTggtccagacccgatcaat cgaacttgtcgaaccaatcgaactaatcgaactccattgaacgattaaag ttcgattagttcggtcagtaaaaagttcgattagttcgatgatattaaaa tcctcatatcttccctcgcttgcaaaaactttgtcctggcacgcgattgc caatttcgacagttcccggacttaccAGCTTGATGTTTATTGTAACCAAA Cctattgatcgaacttaatcaaacactcacaatcttttaaaaaatcttag agatcgaactttaatcgttcgatggagttcgattagttcgattgttcgac aagttcgattgattgggtctggagtggttgaaaatgatgatataaagcca ggcggtgtcaatcgaactgttctattatcgaactaatcgaaccctatcga acgatagctgtttgattaccgaacccaatcgaacacctatggcgatggga atttgatgttctgtttaccgtcgcgtttcaaaaaatatttgatgcggcaa aatttcattattcattattcctacctcacgtgcgtttgcgtagggtaaag tggcgaaatgcgaaaatcaaatttggcaaaaaaaaattgaaaaatgaccc tacaagatttgactatatctttttattccatgaagagattactttcaaat aaaaaatgtattaacaatgaatgggTaagctttctagaaatccaaacata aattgtatagcttttaccaaaaaatagcactttaggatcagaaacaatca aaaaccagtttttttccaatttcttcgagttacaggattaattctttctt tttgaaatttcagtagGGTGGCCAttatggttcccttgctcatatcaggg gggccgAGACGGGAAGAGATTAAAGTTCTAAGTAAAATCTGATTGTCCcc aaaagtgcctttttttttctatcttttaaATTTGTCCAGCCTTATCCCTT taagtaaagcttcctatacctttgtccttcagaaaaaccaaaaatattgg ccctTAAATGCTTgcttcagttcctgtagccagtagtgtgtaATTTGACC CCCTGTTTTCTATTTTCGCGCGGGTTTTTAATAGATAAGTCACatctcaa atcccgcagtcttattggacctagagaaagcgaaagtgaatcgcgcgatc tgattggatgaaaaaaagaccgcgggagcggaaacgaatggaattctcta atTCTCTTTTAAATCAAGATGGGGCGAGAAAGCATGTCTTTGCTTGACGA AAGGtagtaaattctggttgattgttaaggttttatcttatctaatttta ctttaattagtgAGGCTTCTTCGAtatttggggaaggtaagtctgtaaaa gttatttgttttttcggtggaaaaatgtttataaaaagcattttgtgctc aaggtttattgttctcgcaaatttttgtcttcatgTAAATAGATGAACGA GTATTTGACTGTTGCTTATGATTTTTccatagaacatagtaaaactattc aggaacttagacctttttacagaatttcaaactgcttaaaaaaatgCCCG CCCCATTCGCGGACGTGATCGGAACCATGTTTTTTACTCGAGGCGCACAT TTTGTTAGcgaagatgttatttttgattcactttgagtgttttggatagc ttggcacaggaaaagaagaaaataatgagtttttaagaaataatgaactt ttttgagcggcgGCTCAAGAGCATGCGGGCGgtcgacggtaaacagaaca tcaaattcccatcgcctaTCGAACCGGAAAAACTttggccaggcccaatt gatagtttggttcgtgtcctccAACCACCGACtctaaattttttagaaaa catgTTTCACTTTGAGTCCTCATTTTCACATGAGAACTATCTCTGCGGCT CTTTTTTAACTGACTGCTTTGATTCTTTTATAAACAACATCCACTTCACG CACAGAAAATGTCCCGGTGTAACCCATACTTAAAAACAAATACTAAGCAC CTAAAAGCAGAGAGTCACAGTGGTATTCCTCTAAGCACACGCCGCGAACG CCTTAATCTCCAACTAAAAGGTTACCTTGCGACTGCGGCACGTGTCTTTG TGGATCCGGGATTTAGGCTATTTCTTTACATTCGTTGGATTCCAGGATTG CGCGGTTGCTTGAGGAATTTCAAAAGTTGaggtttttggtgggaaaatga aaaaaaggttccaattttagctaccgaccgacccatttttcaaagcttct aggacacaaaccaaacaatcaattgggcctggcctttCGTAAAGTTTGAC TGTTTGATTATACGATTATAGTTTGATCGCAGTTTGATGAATACGAttga ggttcgatcagttcgagtAAGATTGCAGTTCGATTGGTTCAATTAAATTG ATTTATATATACCTTGccgcccaattttttatttatattccgaGGGCGTA TTGGCGGCTGCCCacgaaaaaaaaagatcttaatttttattactttcttt aaaaaagtgttatctctattatttcaaatgagcaGTAATGCATGAGTGAA GCATAATACggtgcctgtgttttgattaaacaacctcgtaattttctgaa aggtaaagaaaagtagaattaATCCAACACAATCATCGTACCACATCGAA CTTTCATCAaacttcatcgaacaaagaacaCTCATCGAAAtaaatcgaac ttatcaagaaatttttgaaagttcgatAGCTGTTTGATCGGGCTCAGTAA TCGAACAGCTAACGTTCGATTTTGCTGATAAagttcgataacgaaaatca GTTCGATAGGGTTTGGTTGACACCGCCTGAATAAAGATCGTTGAAATATT CCTACAAAATCGACTCaattttcttgttgttgtttttttttgaaaaatcc aaggaaatgtttatttttggattatgctttttggacctacctaaggtagt cctttaaattaacccttgtccgttcgtttGTTCGTTCGTTCGTTTGTTCG TCCGTTCGTTCGTTCGTCTGTTGCCAGCTTTTCTCGGGATCGGCTCATTA GTTTTTTCTAATTTTTTGCACAATGATGCAAATTGGCAATGCCCAAAATG TGACGGAGCCCGATTTTCGAAAAAAAAATTTTTCCGGCCGAAAATGGCAG AAATATGCCGGAAAAACTGGTTTTTCGGCATTTTCTCGAGATTTCATCAT TAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaGCATATAT CAATAAAATGTTCAGTTTGTGTCTTTAAACATCCCCAAATCCAGTCGCAT AGTTGGTAGTAAATGTTGTTGGATTTATAAATATGTCGGAAAAACCATTG GTGCTCCGTTTaaatttgctaaaataaaaTCCATTGAGATGTATTGACCT TAAAACTGGACCCAATTTTTTACCCTCAGGGGTACCGGCTCTATCATGGC AGTGAATTACagttcaaaaatttcaatgagggtggatggaaataaaaaaa tggctgtaacttttgataaaatttgaatgcAGTTGCAactttgtgcttgt tgaaaagatatttgtggtGGAATatgatcaagcaaaaaaaaatgaagaag ataaatatcaacttcttgtagaaatgtggtataattgcTATTTGACAGGA GTGATCCTCAAGATTTATGAATCTTTTGTTAGCCCCAGGACTTAtgaccc tagacactttcaaaaaattgatccagtaaaaaagggttttccaatgtaaa ttgcgttcggttttaagtttaagataaaatattttgcccactttctataa aaatattgtggTGCAGGTGAAATgttttcagattcatgagcttctATTTG AGTAATGGAGGCCAACTATTaggctgaattattttagcccccacgttaag tgaagagattttagctcccccccccccaaaaaaaaaaaagtggtgtactt ccagccccctcctattttgggaaaaatttgtTAAcccccccAGACCAGCA GGGGGCATGCAGAAAAAATCACAACTTGATTCAAATTCCCTCAAAAGTTA CATCCaattttgtctcagctgcaaattatttgaGACAGACCTTAGCACAG AGGACTTCAAATTTGTCAAACCAATGCATAGCCAATTCCTTCATACTTTC ACCCACAGTATGAAGGCCAGACACTATGCTATATTAATTATCAAAGTATC ATTGAACTTTTTCCTCCTCGTGAAAAAGTTGCAGAGCTCTAAAGGTATTC TTGCCTTGCACTTGAAAACAACCATATAATCGGAATGTCAATTTTACCAT AACTAATCTTAATAGGATAgagtttatttttataagtattCAGTGATCCG GTTGCAGGGTTTAGAGataccctggaaaacctggaagaatgtttcaaaaa ttcagTGAAACTCTGATTTTTGGACCTGCCCCGGTGGGgaggaggtccta taaattcgcacatcctttaattttcgcgcggcCAAGTGTGCAAAAATAGA CTATTTCGCGCGCCTTTTATATTTGGGCACGTATTCTGTGCGAAAATTAA GGAATTGCTATTTTGCAACATTTTCTGTTGGATGTTTTTGTTACAGCAAC AAAGTTTTCATGTTGCAATTGAGAATTATACAAAAccagggggggtcggt actaaaatctcagacatcatgacatttagtgacgtggtggtacgcaaaaa agctcaaaaataattttagtaccatgtgtactaaaataccaaaaagggtg gtcccttaaagaaatttttgaaaaatcttagtattttgttctaaaatcag ccaaaatggagcattttttaacaattttgaaaaaaaattgattttttttt tcaggaattctcgaaaaaatcttcagaaatctttcagaatttttccaatt ttttaaatattttttaaaaatatttttatgtatagttcagcacagtttag taataaaattctattattttgcagattgatgcactaaattcgactaggtt tgtaacaatgaccccattttggtaaatttaaagctGTAAAAGGGCAAAGA attggtatctatgttaaattgctcaaaataattttagtacatgtgtacta aaataacattttcgaaaaataggtggggtatgtcaaaaattagcgaaaat ccttttagtactcatgtatgtcttacattttagtactgacccccccccct gacaaAACCCTCGTGTCCCCTCACCTCAAAgattttttgcaacatttttt ttaacCTATCAAATTCGTTATACGAATAAACACGAATTAAAATCATCGGC CATTTTGAATCGCTGTCACACGTGTTCTAACtttaattttataaattttg tttcatGTGCACGGAATCAATTTTCATGCGAATGCAACAAATAATTTTCA ATGCAATCGCACAAAAATTGTTTCTGTGTCCCCGAAGCTTTAAATCATTG TTCTTAGCAATAAACAGGGCAACAAATTTGTCACTTTTACTTTTTCAGAC TCGAAGATTAGGATTTTTGATTTGGGAAGAAAGAGACAACCTGTCGATGA CTTCCCTAAATGTGTCAATCTCGTATCTGACGAATATGAGCAACTTTCAG CAGAAGGGTTAGAGGCAGCACGTATCTGCGCCAACAAATACATGGTTAAA ACTGCTGGAAAAGAAAGTTTCCACATGCGTATACGTGTCCATCCATTCCA CATTGTCCGTATCAATAAAATGTTGTCGTGTGCCGGAGCTGATAGGCTTC AAACAGGAATGAGAGGTGCTTTCGGTAAGCCACAAGGAACAGTTGCTCGC GTTAATATTGGACAACCTTTAATCTCCATTCGATGCAAAGATCAACATGA ACACGTTGCTATTGAAGCTTTGAGAAGAGCTAAATTCAAGTTCCCTGGAC GTCAAAAGGTATTTGAGTACTAAATttggttctcaacttcagttgagcta taatctgagaatgtctgtatgtccgtccgaaaactttagggcaggctgga cacttcaaaaaggtcggattggctgaaatttggcacacttgttccttgtg tgaatatctgggggtgtttttttcattttttgaaaattttgatttttggg gcctggggacgagtttttcgccaaaacgaggctaagactttggggcagcc tggagactgcaaaaatggtcaaatttggctgaaatttggcagtAAACAGT AAGTTTATATTGTTGTATGCTTTTTCCTGCATTGCCCATAAGAGTCAAGG ACAAAcattaaacaaaataataattgatttaaTCCCTCCAAAAGGAATGA AAAGAATCcatttgagttttgtttatgtgCTATTGAGCAGAGTTCGGAGA TTGGCTGATCTCACAATTGTCAGACCCTTTGATCGGGATATTTTAAACTT GTCTGTGGATAGTGACTGTAAAGCTATGATGGTAGACTTTAAGAATAGGG ATATATGTAAACATTTGTGAACCCAAGAAAACTTTAATatcttgataaat tttaaaatcaattttcgtatatGATAAATTGtgggaaattaatttttcag agcAACGTGTGAACAAAAGCCACAAAAGGTTTGAGGAACTTTCTCctaag ttatttattttgaaaggctcttaggacgaggacactaccttattggaact aattttcgcgggaactaattttcgcggtcgaaaaaaaatatccggaaaat tgcatttcgcgggttttaattttcgcggttttttccattttggaattttc gcgggttttaattttcgcggttttgcccttttttggacaaatttctttca ttttcctagggatttttcaaatttttcgataaaattggaaaaaattgtat ttcacgggaattaattttcgcggttttcagctctcaaaatttttcgcggg atcaaattttcgcgattttgacgaaaaaccgcgaaaaacgctaaaattaa aacccgtgaaaattagttccaataaggtattctaacgcacataaaaaaat gaaaaaattaagataaaaacacccccaggtattcacccaaggaacaagtg taccaaatttcagccaaaacggacaaagtatatttgctacctaatactaa atatttgaaatgttacaattgggccttctaataacgggaaaatctgaagt tgagcccagtgcggtgcggtTCGACTATTTTGTCATAGTTTATGAAATCG ACCACTATAGAGTGAATACTTTAAtcggactaaatttcgcgaaaagaATC TAAATTTTCTGGAATGATTGATTCTGCGAATCaagagttttaaaaaattt cgcgtggatttaatttcatgtttttgatcCCCTTGTCCTAAttttgctgt attagcctccttgctttcaaaaattttcctcccagaacatttttattcag aCCCCACCGCTAactaagttttgagattttgtcCAATCCCCTCGCTTATT CCATTTTCAAGTTATTTTGTTGAGCTAtgaaaaacaagttaaaaattcGA GTTATCTCTATTTTATAACTCGGTTCCTATATTTTAATCAAAACCTAAGA CttgaattataaaaagaaatattcacaaaaataaaggAACCGAGTACCGA ATTGTTGATGAGCTTATAATCAAGCCAAAAGTTACGAAAAAGGATAATAC GCTGCAATTCggttttttaactcaaaaaaaaactgtgacgaacgtacttt tttgGATGCCCAGGCTTAGACATCTCAGAATTTTAGCCTTTCCTCAAAGC AAGAGATTCCAACCTGTTATtttcttcaattcttagatCTTTGTTTCCAA GAAATGGGGATTTACCCGCTGGAACAGAGAAGAATATGTTGCACGCCGTA AGGATGGCTCCATCAAACCAGACGGTACCAATGTTCAATATTATCCAAAC AAGGGACCCTTGAAACAATGGAAATGGAGAGAAAGtagatgttaattttt gtttatttgtttgtaaACAGAAATTTTGATGTCATGGAATTACAAGATAA CAACCACCTGGACATTACAATgtttctcattttgaaaatactcttaggtg ccaaataaacgcccccctcccaatttttttaatgcattatttcaaaatca acaatcaacgtctccagtacattcttattccaactcccccccccccgcgc ttattaattttagatttaacttgtttttgaaaggtaaaaacagtacgaag catgtttttatttgagaataagggattgcaaatctgttattgatgtttgt ttctcattttttattacatCATCAACTCAAAGTTGCCTATATTTacctag acaggagacccgtccttgtttttggaaggtaaaaatagtatgaagcaata tttttatttgagaataagggattgcaaatctg

Coding sequence (CDS) from alignment at sc0000077_pilon:568830..579561+

>MSTRG.10875.2.p1 ID=MSTRG.10875.2.p1|Name=MSTRG.10875.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000077_pilon:568830..579561+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTAAAACTGCTGGAAAAGAAAGTTTCCACATGCGTATACGTGTCCA
TCCATTCCACATTGTCCGTATCAATAAAATGTTGTCGTGTGCCGGAGCTG
ATAGGCTTCAAACAGGAATGAGAGGTGCTTTCGGTAAGCCACAAGGAACA
GTTGCTCGCGTTAATATTGGACAACCTTTAATCTCCATTCGATGCAAAGA
TCAACATGAACACGTTGCTATTGAAGCTTTGAGAAGAGCTAAATTCAAGT
TCCCTGGACGTCAAAAGatCTTTGTTTCCAAGAAATGGGGATTTACCCGC
TGGAACAGAGAAGAATATGTTGCACGCCGTAAGGATGGCTCCATCAAACC
AGACGGTACCAATGTTCAATATTATCCAAACAAGGGACCCTTGAAACAAT
GGAAATGGAGAGAAAGtagatgttaaATGGTTAAAACTGCTGGAAAAGAA
AGTTTCCACATGCGTATACGTGTCCATCCATTCCACATTGTCCGTATCAA
TAAAATGTTGTCGTGTGCCGGAGCTGATAGGCTTCAAACAGGAATGAGAG
GTGCTTTCGGTAAGCCACAAGGAACAGTTGCTCGCGTTAATATTGGACAA
CCTTTAATCTCCATTCGATGCAAAGATCAACATGAACACGTTGCTATTGA
AGCTTTGAGAAGAGCTAAATTCAAGTTCCCTGGACGTCAAAAGatCTTTG
TTTCCAAGAAATGGGGATTTACCCGCTGGAACAGAGAAGAATATGTTGCA
CGCCGTAAGGATGGCTCCATCAAACCAGACGGTACCAATGTTCAATATTA
TCCAAACAAGGGACCCTTGAAACAATGGAAATGGAGAGAAAGtagatgtt
aa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10875MSTRG.10875Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10875.2.p1MSTRG.10875.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10875.2.p1.exon1MSTRG.10875.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10875.2.p1.exon2MSTRG.10875.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10875.2.p1.exon3MSTRG.10875.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10875.2.p1.exon4MSTRG.10875.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077_pilongenomesc0000077_pilon:568830..579561 +