MSTRG.10861.1.p1 (mRNA) -

Overview
NameMSTRG.10861.1.p1
Unique NameMSTRG.10861.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000077_pilon:311388..315279-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10861.1.p1 ID=MSTRG.10861.1.p1|Name=MSTRG.10861.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3892bp|location=Sequence derived from alignment at sc0000077_pilon:311388..315279- (Clytia hemisphaerica_ch_hm2_pilon)
GTTAGAATAAATTCTAGTAGTGTTTTTTTAATTAATTGGACAGAATATTC
TTGAGGAGAGGTAATGGATAAAACGAAGTCACTTGATCAAACTTTTAAAG
ATACCTTATATTTAGAAGAAGGTATTAGTGCCCGCTGTACGTGTGGGATA
TTACTCGAAAATTGTGAGCAGTGTTCCAAAAAGCAACAACTCTTCGGAAA
GTCTTATTACAGATGTCCTGCATGTAATGGCATGACACGCTTAACACGTG
AGATTTGTCCTTATTTTTCTTTCATTAAAGAGACATAAAAGTAGTAAAAT
GTAAACATTGCGTGAACCACGTGTCATTAAAGAGAACAATTAAAATTACG
TGTACACAGGTGTACAAAACAAACTTGTAAAACAATTGAAACAATCAAAA
TCAGCCATATTTGTTTTTATTTTTTTATTTTGACATGTGACATTTGTTTT
GGTTTTGTATCCCGCTGCACACAGTTTGTTTACAAAATTTGTCAGTACTT
TTATGTCCCTTTAAAGTTTACACACCAAACCTTGTTCAGACCCAGACACA
GCTACTTCATAAAAGGCTTTTAAAAATTCTTACATATTTTTCTGCCCATG
ACAGGTCTTACCAACCCACCATGCTTATTTAAACCCTCGTCTATTACACA
ACTGAAGCCAATAGAAATAGTTTTCGCAAAAATGATTTTCACATTTTGCC
AATTCTTGCCAGTTTCGCGAAAAGAAATCGCACGAGAGAGCTGACTGCGA
AATTGAATTCACACGAAATTCAGGTATTCAGTGAGAAATACAATGTATGT
ATTGTATAGCTGTTTTTTGGTGTTTTCAGTGTATATTCACCATAAGCTAG
TAATTAAAATCTGTTGATTGAAGAGCGTTTAATATCTGTCCCCTTTGATA
CCTATCCAGGTGACAAAAAGTTTGACAAAAGGTGTGCCAACTGCGAGGGA
AAGCCACTGGATCTGTGTCCAAACGAGGGAGAAGTTCGAATCGAGATAGT
GAAAGGGAAAGAATCTCGATGTGGCTGGTTGTATGCAGGCAAAGTTTGTT
GCTTCAATGTCCCACTCTCAAGTACATCAGTATCAGATTTGAAAGACAGC
ATCGAAGAGATGTGTCGAATACCAAGATCTGCTCAACGTCTTTCTGAGCC
TTGTTCTAAGGAATCAATTACCGATACCAGGATGTTATCATCTTTTAATC
TGGTGAAGGAGAAACGAAAAACAGTATTGTTGGTCTCACAGAAACGCAAG
CACCCAAGTGAAACAAAAGAAATATATCTCCTGCATCTCCATCTAGCTGT
ATTTGCCAACTTTCTTGACGAGAAGACAACAAGACTATGTAAAATAAATG
AAGTAGAGATGCAGGTTATTGAGATCAGAGCATTCGGTTCACGTCAGCTT
CTACCCTTCACCAACGACTTCACATCCCAGGGAGCGCTGATGAGTGCCAT
TGAATCAGATCTGGAGATACCGTTTAATCACCAGATACTGATTGAGGAGT
CTCGGAACGGTGGAGAGTGGTGGGAGTGTTCAAAACGTAGGGATGAGATT
GACACTAAAGCAAAGACTATCTTCATCGCCGTTAAAGGTACATACAAACT
TTATTTCTTAATATACTTACCTTATCCACTTATCAACTTAAAAGGGACTT
AAAATTAGCATGTTCTTAGCAATCTTTAAAATCTGAGGATGAGATTAATT
GCCCTTAATTAGTTGTTATGTTTTTGAACCTTATGTTCTTTAAAGATTGT
ACTTCGAAAAGGAAAAACATGTTCCAAAAATCTCTAACCAGAAGTGTAGG
TGCATTTGAAATTCATAAAAAAACTAAATTCTATAACTCCGTAATTTAAA
CTATCAATTATTTTCTGATTTCAAATGCATAGATCTTTAGTAAGCAAAAT
TTGCTTCGAACTGTATTTCATATCATCTGAGTCTCTATAATTCCACGACA
GTTGACTCTCTCTAATTCGATCTTCAAGGGATCAAGAATTTCCTTCGAAT
GAGAGAAAGATTCGAATTACAGAAAGTAATTTAAACTACTTTCTTTTCAG
CTGAGGGACTAACATTTCAGTTCGAATTACAGAAAGAATCCAATAATTTT
TCATAAAAACATCCAAAATTTTAGAAGCCTTCGGATGTTCTAACTTTTTG
AGTTTCAAGTCTAAAAAATGTTCTTAACATGTTCTTATTTTCGCCATTTT
GTGAGGAAACAACATTTCAAAAAGACTTAAAATGATCTTAATATTTTGGC
CATTGAAACCTGTATGTTCTTATACAGTTTGTTCTTATAGATGGAAAAAG
AGTTGAAGAGAGTTGACTGCGCTCATACAATTCGAAGAATTGTGTATTAG
TGATGTTCAACGAACTAAAATCGAACTGTTTTTAAGGTATCAAAGATCAC
CCCGATCATGAAGATCTTCGTCAAACTTGTCAAGCGTTTGGAATCAAAAT
GTTCTCATCCTTCACATTGAGGTACCAAGGTACAGAAGAAGTGCTAAAAT
TCGATGAATTTTACCAATTCGCGGATGTGAAAAAGCATGTTTTGAAGAAA
TATGGACTGGGCCTTACTGACCAGCAATATACATTCGGAGAAGACAAAGA
GAATACTTTCCCATGTATGATGGATTTGTTTTTAAAGAAGAATGATTTGG
AAGATATCAAACTAATCCTTCACAAGAAAAACATAAACGTCAACCTGATC
AAAGAATTGGGCAACCAATTGGAGAATGAAGAAAATTCTATTGTTTTACA
CATACCAACCAAGATCTACCATCGTGTTTTAGATTTCAAGATGACCCATC
AGGAAGAGATTGATATTCCAGTCAAGGAGATGGAGCTTCGGTTAGGTGAT
TATATATTGGAGGACAGCAAAACTCTCGATGACTATGGAATTCGTTCAGA
AGCAACACTCAAGGTACGTAAGAAACCATTCGAAATCTGCATCGAGCTTT
CAAAAGAGCACGCTCGAAAGGATCTAAAGGATTTACAAAACTTGCACAAA
GCGAACGGATTCAAGCTGGACAAATCATTCATTAAACTCGGACAAAAAGT
CAAAGTCCAAGATTGGAATACAATCGGTGAAGTTAAAGAATGTTTTGTGG
AACGGGTTACCGAGATCGAATGCGCAGAAAATATTGTCCTCTTTCTGAAT
GGTGAGCCATTGGATGACAACAAAACGATTGGTGATTATGGAATCAAATC
CTACTCGTGTATCGCATACCGGCAGAAAAGAGTTCTCCGAATGTGTTTAC
CGTTCGCAACAAAGAAATGAAATTCATCCCTGATATAGCTTTATGGGAAC
TAGAGTAACAAAAACATATATAGTCCTTAACTGGTGAAGCTGACCATAGA
ACAGAAAGTATTTCAAGCATAGACTTTGGTTGAATTGACGAATATTTTCA
GGGATTTTGGAGTTCAACCACGAGAGAGACGCAAAAATGAACACTGTAGA
ACTTTAACTTCTTCTTCGTGAAAGCTTCCAATGCGATACTAGACGACGAA
ACAAAATAACATTTTTAGAATATTCGTGAAATACTTAACAGCAACGCACA
AGCACAATTCTGTCTTTAAAGCTGGCACACAACGCGTGACTTCACGTCTG
TTGAGCATTGAAATAACGTTGTGTACCAGCTGGGTTGATGGAAACTAAAT
AAGTATATCAATTTATATTCTTTTCTTTGAACCTAAATTAATTACTTTAT
TTATGTATTTATTCATTATTTTTGTGTGAAACGCTGCCAAGGGTAGAAAG
AAAATGATACATTATTGGGCCATTTCATTTTGTATCCATACAGGGGGTGG
ACGAACATTTCCGTAAACGTTCGTAAACCCTCACTTTAAGGTATTAAAAC
AATCTTTCCAAGGGTACTTTTGCAAATTTCGCCATTTTCCAG

Coding sequence (CDS) from alignment at sc0000077_pilon:311388..315279-

>MSTRG.10861.1.p1 ID=MSTRG.10861.1.p1|Name=MSTRG.10861.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5238bp|location=Sequence derived from alignment at sc0000077_pilon:311388..315279- (Clytia hemisphaerica_ch_hm2_pilon)
GTATCAAAGATCACCCCGATCATGAAGATCTTCGTCAAACTTGTCAAGCG
TTTGGAATCAAAATGTTCTCATCCTTCACATTGAGGTACCAAGGTACAGA
AGAAGTGCTAAAATTCGATGAATTTTACCAATTCGCGGATGTGAAAAAGC
ATGTTTTGAAGAAATATGGACTGGGCCTTACTGACCAGCAATATACATTC
GGAGAAGACAAAGAGAATACTTTCCCATGTATGATGGATTTGTTTTTAAA
GAAGAATGATTTGGAAGATATCAAACTAATCCTTCACAAGAAAAACATAA
ACGTCAACCTGATCAAAGAATTGGGCAACCAATTGGAGAATGAAGAAAAT
TCTATTGTTTTACACATACCAACCAAGATCTACCATCGTGTTTTAGATTT
CAAGATGACCCATCAGGAAGAGATTGATATTCCAGTCAAGGAGATGGAGC
TTCGGTTAGGTGATTATATATTGGAGGACAGCAAAACTCTCGATGACTAT
GGAATTCGTTCAGAAGCAACACTCAAGGTACGTAAGAAACCATTCGAAAT
CTGCATCGAGCTTTCAAAAGAGCACGCTCGAAAGGATCTAAAGGATTTAC
AAAACTTGCACAAAGCGAACGGATTCAAGCTGGACAAATCATTCATTAAA
CTCGGACAAAAAGTCAAAGTCCAAGATTGGAATACAATCGGTGAAGTTAA
AGAATGTTTTGTGGAACGGGTTACCGAGATCGAATGCGCAGAAAATATTG
TCCTCTTTCTGAATGGTGAGCCATTGGATGACAACAAAACGATTGGTGAT
TATGGAATCAAATCCTACTCGTGTATCGCATACCGGCAGAAAAGAGTTCT
CCGAATGTGTTTACCGTTCGCAACAAAGAAATGAGTGACAAAAAGTTTGA
CAAAAGGTGTGCCAACTGCGAGGGAAAGCCACTGGATCTGTGTCCAAACG
AGGGAGAAGTTCGAATCGAGATAGTGAAAGGGAAAGAATCTCGATGTGGC
TGGTTGTATGCAGGCAAAGTTTGTTGCTTCAATGTCCCACTCTCAAGTAC
ATCAGTATCAGATTTGAAAGACAGCATCGAAGAGATGTGTCGAATACCAA
GATCTGCTCAACGTCTTTCTGAGCCTTGTTCTAAGGAATCAATTACCGAT
ACCAGGATGTTATCATCTTTTAATCTGGTGAAGGAGAAACGAAAAACAGT
ATTGTTGGTCTCACAGAAACGCAAGCACCCAAGTGAAACAAAAGAAATAT
ATCTCCTGCATCTCCATCTAGCTGTATTTGCCAACTTTCTTGACGAGAAG
ACAACAAGACTATGTAAAATAAATGAAGTAGAGATGCAGGTTATTGAGAT
CAGAGCATTCGGTTCACGTCAGCTTCTACCCTTCACCAACGACTTCACAT
CCCAGGGAGCGCTGATGAGTGCCATTGAATCAGATCTGGAGATACCGTTT
AATCACCAGATACTGATTGAGGAGTCTCGGAACGGTGGAGAGTGGTGGGA
GTGTTCAAAACGTAGGGATGAGATTGACACTAAAGCAAAGACTATCTTCA
TCGCCGTTAAAGATGGATAAAACGAAGTCACTTGATCAAACTTTTAAAGA
TACCTTATATTTAGAAGAAGGTATTAGTGCCCGCTGTACGTGTGGGATAT
TACTCGAAAATTGTGAGCAGTGTTCCAAAAAGCAACAACTCTTCGGAAAG
TCTTATTACAGATGTCCTGCATGTAATGGCATGACACGCTTAACACGTAT
CAAAGATCACCCCGATCATGAAGATCTTCGTCAAACTTGTCAAGCGTTTG
GAATCAAAATGTTCTCATCCTTCACATTGAGGTACCAAGGTACAGAAGAA
GTGCTAAAATTCGATGAATTTTACCAATTCGCGGATGTGAAAAAGCATGT
TTTGAAGAAATATGGACTGGGCCTTACTGACCAGCAATATACATTCGGAG
AAGACAAAGAGAATACTTTCCCATGTATGATGGATTTGTTTTTAAAGAAG
AATGATTTGGAAGATATCAAACTAATCCTTCACAAGAAAAACATAAACGT
CAACCTGATCAAAGAATTGGGCAACCAATTGGAGAATGAAGAAAATTCTA
TTGTTTTACACATACCAACCAAGATCTACCATCGTGTTTTAGATTTCAAG
ATGACCCATCAGGAAGAGATTGATATTCCAGTCAAGGAGATGGAGCTTCG
GTTAGGTGATTATATATTGGAGGACAGCAAAACTCTCGATGACTATGGAA
TTCGTTCAGAAGCAACACTCAAGGTACGTAAGAAACCATTCGAAATCTGC
ATCGAGCTTTCAAAAGAGCACGCTCGAAAGGATCTAAAGGATTTACAAAA
CTTGCACAAAGCGAACGGATTCAAGCTGGACAAATCATTCATTAAACTCG
GACAAAAAGTCAAAGTCCAAGATTGGAATACAATCGGTGAAGTTAAAGAA
TGTTTTGTGGAACGGGTTACCGAGATCGAATGCGCAGAAAATATTGTCCT
CTTTCTGAATGGTGAGCCATTGGATGACAACAAAACGATTGGTGATTATG
GAATCAAATCCTACTCGTGTATCGCATACCGGCAGAAAAGAGTTCTCCGA
ATGTGTTTACCGTTCGCAACAAAGAAATGAGTGACAAAAAGTTTGACAAA
AGGTGTGCCAACTGCGAGGGAAAGCCACTGGATCTGTGTCCAAACGAGGG
AGAAGTTCGAATCGAGATAGTGAAAGGGAAAGAATCTCGATGTGGCTGGT
TGTATGCAGGCAAAGTTTGTTGCTTCAATGTCCCACTCTCAAGTACATCA
GTATCAGATTTGAAAGACAGCATCGAAGAGATGTGTCGAATACCAAGATC
TGCTCAACGTCTTTCTGAGCCTTGTTCTAAGGAATCAATTACCGATACCA
GGATGTTATCATCTTTTAATCTGGTGAAGGAGAAACGAAAAACAGTATTG
TTGGTCTCACAGAAACGCAAGCACCCAAGTGAAACAAAAGAAATATATCT
CCTGCATCTCCATCTAGCTGTATTTGCCAACTTTCTTGACGAGAAGACAA
CAAGACTATGTAAAATAAATGAAGTAGAGATGCAGGTTATTGAGATCAGA
GCATTCGGTTCACGTCAGCTTCTACCCTTCACCAACGACTTCACATCCCA
GGGAGCGCTGATGAGTGCCATTGAATCAGATCTGGAGATACCGTTTAATC
ACCAGATACTGATTGAGGAGTCTCGGAACGGTGGAGAGTGGTGGGAGTGT
TCAAAACGTAGGGATGAGATTGACACTAAAGCAAAGACTATCTTCATCGC
CGTTAAAGATGGATAAAACGAAGTCACTTGATCAAACTTTTAAAGATACC
TTATATTTAGAAGAAGGTATTAGTGCCCGCTGTACGTGTGGGATATTACT
CGAAAATTGTGAGCAGTGTTCCAAAAAGCAACAACTCTTCGGAAAGTCTT
ATTACAGATGTCCTGCATGTAATGGCATGACACGCTTAACACGTATCAAA
GATCACCCCGATCATGAAGATCTTCGTCAAACTTGTCAAGCGTTTGGAAT
CAAAATGTTCTCATCCTTCACATTGAGGTACCAAGGTACAGAAGAAGTGC
TAAAATTCGATGAATTTTACCAATTCGCGGATGTGAAAAAGCATGTTTTG
AAGAAATATGGACTGGGCCTTACTGACCAGCAATATACATTCGGAGAAGA
CAAAGAGAATACTTTCCCATGTATGATGGATTTGTTTTTAAAGAAGAATG
ATTTGGAAGATATCAAACTAATCCTTCACAAGAAAAACATAAACGTCAAC
CTGATCAAAGAATTGGGCAACCAATTGGAGAATGAAGAAAATTCTATTGT
TTTACACATACCAACCAAGATCTACCATCGTGTTTTAGATTTCAAGATGA
CCCATCAGGAAGAGATTGATATTCCAGTCAAGGAGATGGAGCTTCGGTTA
GGTGATTATATATTGGAGGACAGCAAAACTCTCGATGACTATGGAATTCG
TTCAGAAGCAACACTCAAGGTACGTAAGAAACCATTCGAAATCTGCATCG
AGCTTTCAAAAGAGCACGCTCGAAAGGATCTAAAGGATTTACAAAACTTG
CACAAAGCGAACGGATTCAAGCTGGACAAATCATTCATTAAACTCGGACA
AAAAGTCAAAGTCCAAGATTGGAATACAATCGGTGAAGTTAAAGAATGTT
TTGTGGAACGGGTTACCGAGATCGAATGCGCAGAAAATATTGTCCTCTTT
CTGAATGGTGAGCCATTGGATGACAACAAAACGATTGGTGATTATGGAAT
CAAATCCTACTCGTGTATCGCATACCGGCAGAAAAGAGTTCTCCGAATGT
GTTTACCGTTCGCAACAAAGAAATGAGTGACAAAAAGTTTGACAAAAGGT
GTGCCAACTGCGAGGGAAAGCCACTGGATCTGTGTCCAAACGAGGGAGAA
GTTCGAATCGAGATAGTGAAAGGGAAAGAATCTCGATGTGGCTGGTTGTA
TGCAGGCAAAGTTTGTTGCTTCAATGTCCCACTCTCAAGTACATCAGTAT
CAGATTTGAAAGACAGCATCGAAGAGATGTGTCGAATACCAAGATCTGCT
CAACGTCTTTCTGAGCCTTGTTCTAAGGAATCAATTACCGATACCAGGAT
GTTATCATCTTTTAATCTGGTGAAGGAGAAACGAAAAACAGTATTGTTGG
TCTCACAGAAACGCAAGCACCCAAGTGAAACAAAAGAAATATATCTCCTG
CATCTCCATCTAGCTGTATTTGCCAACTTTCTTGACGAGAAGACAACAAG
ACTATGTAAAATAAATGAAGTAGAGATGCAGGTTATTGAGATCAGAGCAT
TCGGTTCACGTCAGCTTCTACCCTTCACCAACGACTTCACATCCCAGGGA
GCGCTGATGAGTGCCATTGAATCAGATCTGGAGATACCGTTTAATCACCA
GATACTGATTGAGGAGTCTCGGAACGGTGGAGAGTGGTGGGAGTGTTCAA
AACGTAGGGATGAGATTGACACTAAAGCAAAGACTATCTTCATCGCCGTT
AAAGATGGATAAAACGAAGTCACTTGATCAAACTTTTAAAGATACCTTAT
ATTTAGAAGAAGGTATTAGTGCCCGCTGTACGTGTGGGATATTACTCGAA
AATTGTGAGCAGTGTTCCAAAAAGCAACAACTCTTCGGAAAGTCTTATTA
CAGATGTCCTGCATGTAATGGCATGACACGCTTAACAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10861MSTRG.10861Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10861.1.p1MSTRG.10861.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10861.1.p1.exon3MSTRG.10861.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10861.1.p1.exon2MSTRG.10861.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10861.1.p1.exon1MSTRG.10861.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077_pilongenomesc0000077_pilon:311388..315279 -