MSTRG.1077.2.p1 (mRNA) -

Overview
NameMSTRG.1077.2.p1
Unique NameMSTRG.1077.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:1864651..1868310+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1077.2.p1 ID=MSTRG.1077.2.p1|Name=MSTRG.1077.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3660bp|location=Sequence derived from alignment at sc0000005_pilon:1864651..1868310+ (Clytia hemisphaerica_ch_hm2_pilon)
gatttaccGAATGCGGAAGGATCAAATTTCGCGAAAAGGAtaaaaaatat
gacgaaaaAGGATCAAAACTCGCAAGACTAACAGAAATTGTTCAACGCAA
CATTAACCATCAACTCCAAGTGGTATTGAGATCGAGTCAAAATCAAGatg
aattttcaagatttgttTTCGACACTATTGCTGTTATTTGCATTTTGTTT
CCGCCTTAAGGAAGCATCGAAATGCAAGCGCAAGGTAAGATTTCTTCTGG
TATTAACTTCCCTCTGATATTACCTTGAGAGGATTAATTTTGtcaagaac
taattttggtaaTGCGGCAAAATTACTGCCTCACTGAATAAATTATTCTC
GCCAAAATTCATAGATTTATATCCAAAATAACACgcaatattttttctga
aacaacCATTTGAgatttaaggcttggggacacaagtttttttcgcgttg
gtgcaatgcaacatactccatcccaccaacacaagaagaAAAGtgtgtgt
cccatggtttctttaaACGTGGGGTTGAGACatgagaaagcgtttcaggt
tggtgggatggagcatgttgcattgcaccagcgcgaaaaaaaattttcgt
gtCCCAAAGCCTTTACTGTAAATTACTTTTGCACCAATGTAAGAAATTGC
GCCGCTCACAAAAATAAGTTGTCGTAAAATTTAATCATTCATGATTTTTA
CTCTCTCCAAAAAATTGTTCTtgctaaaaattaagaacaagttaagaata
ttttaaggctttgtggactctaaaacaccctatttctaagtaaaattgga
caaaaatgctcacaaaatggtgaaatcaaaaatgttaagaaaattatttA
AGCTTAGTTCCgaagttttgattttcttaaaaagaatgTATAAAATAGGT
CCATTatcattcgttttttatttttcaggttcCAGAGAATAATCATGGCA
TTCAACCAATCACATTCATCAACCAAGGtgattcttcttttattttaaag
attttgcaaattaaaaaaaagcgaaaatcggGTCAATAAAATACCCTAAA
AATGTAATGGTCTTAACAAAATTCAGAAAAGCCTTGAAGTCTAAGATATT
TTAAAGTCtagcttaaaaaaaattctccgaTGAATATATTTTGCCTCACC
GGATATGAGAGAAATTTCTTTAAGAGTCtccagtttcaaaattttgaaaa
attattatatCTTCGTTTTACCGAGTGATCGAAcccataaacattttttt
aaagctcAGGACTGGAGTTTTCAAAAGCATAAAGCGCAATTTCTGACACC
ACCCATCGTGTCTAAGACAAGTGCTATCACTTGTCATAATTTAGCCATGG
AACATTCAAAAAGTCGTAGTGGTTTAGTGGTGATCATCCTTGACTCCTGC
CTCGGAGGCCCGAGTTCAATGCTCAACGTgtcactacgattcacttggca
agcgAATGTACTTTCACCCGGGTCAAACCATGCCATGCAAAGGGAATTGG
GTACTGTTACTCTAATACAAaagtgtgggtagattagactGGCATTGTGA
CGTGTCGTATGGCACtcgtgagcatcgctctcccagtgttGTTATCGAGT
GTCAGGatatacgccatggcttggcagctcgcaTCTGTCACTTCCGggtc
aagtcgcagtgtctgttACTCCCAAAggggtaggacccatcccgaatgca
ttcgaAGGGGTCATGCCTAGCATCTCTATCTACATTTACGTACGCACTTT
AGTTGAAACAAAAAGATGTGTACGTTGCTAACTACGTCACTTCATACCCT
GTGTGTATTTATACCTAAAGACATACGTAGGTCATCTAATATTTCCAGCT
CAAACCAAACAACCCAAATAGATACATGTATGCATGCataatttatcgtt
ctttaatCCGCTAGTGGTTAAACCAGCGTAAAGTACAAATAGGAATGCGC
AGGGGTGATATCACTTCTAAGATCAGGGGTTAAGATGGCAAAATATGTCG
TcctttgtcgttctttttagatgagcTAGCTGGAAACGTTAGCTGAATAG
TCTCTAACTTAACAAGTTCTTTaagtaaaaattttcgaaatcgtTAATTA
CGTGAAAATTATTCCTGTGTCTATTATAATAATCGTAGTCGAAAATTACG
TTCACTTAATGTAATTCCttatatcttttattttttttacagagGACGAT
TTGAAAAGGGACAATTTGTTGCACACATTCCAAGTCCTTTCAGCTGAATG
GATAGTTCAGTTCAAATTTCATTTAACAACGATCAACCCTGGTTGGTGTA
ATATCATATTAATGACAGCTCAACCAGACTCAATTCATATTAATTCTCCC
AGATATGGTTATCGTGCTCCCTCCGTATATATCGACGCACGTAAGTCTAA
GTTTACACTGTGGACTATCGAAAGTCTAAGTTTACATTGTCTACTAAAAG
ACTGAAGTCGTTTATAATGGGctctcttccagaaaatgtccgtacatggg
ggggggtcactttttcttgcctgagaaaggttagagattgaactctagcc
cttcgggctttaaactcaatggttgggTATTCTTATCATataattatttg
gctaatttcatatatattcttataaaaaaacgtttacctCCTTCGTTAAT
ACTCATCACGTCAGCGGATAATCTTTATCCTGGAACCAAGAGATACCCTT
TTCCTGCTTCgcgcaatttttctcatttatCCAAAGTGAAATCCCCCTCA
GCTCTGATAATAAGCTTACACCCAGAGCTAATTGACGCTAAATCATTGGA
TAATcgaactactttaatgggaatAAATTTAAtggtacttaatttcgcag
atTGTATTTTCATGGTCTTTCTACTGCTAAACTatactggttgttgaaat
acgcattatcaGCTCTTCTTTGATACCAGTAATCATTTTAACCTTTGGga
ccgtccacatagtacgtacgcactaaaatgccgaaaatcgagtaccccct
ccccccatgtacgcaagcgtacgcaaacgGCTAAACCCCTTCTCCCTTAg
tgtgtacgtactatgtggacagcCCCCTTTCCGTGCCCAgggggggggga
tggcaaaaaaattgacaaaagttttcgaggCGATGCAGTTGTTTTCGGcg
ggagaaaatgaaaaaaagtattttgagcAGCCGATGGCATGTATGTTTGT
CCTCCTCAGTTGTTAGCCGCCAGGCCCAATGTCAAATATACTGGACATGG
GCCTGTCGAAAAATTTACACAATGTCAAATATACTTGACATGGGCATGGA
AAAGGTTGAAAGTAATTAtctgaaatttttggaaatttatttaGAATAAT
TCTGTGGACTTATCCAAATTTCTGTTATTATGGGACTAAATTAATTCATT
CCTATTAAAGTCATTGAATATAAACCATGTTTTGAATAAtggttttttga
tttcttttaaagaaaataacagGTTTGAGATCTCAAACTCTGTCAGTGGA
AGATCGCAGTACTCCTATTTTCATAATGGCTTGACACAGAAAACAATCTA
TGAAATGGAGCTTCATCAACGATACAAGAGGGGAGGTGTTTATAAATATT
CGATAATTATAAACGGTGAAGAAGTCCACACGGCCGATAATACGCAAGCT
GAACAATTTT

Coding sequence (CDS) from alignment at sc0000005_pilon:1864651..1868310+

>MSTRG.1077.2.p1 ID=MSTRG.1077.2.p1|Name=MSTRG.1077.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0000005_pilon:1864651..1868310+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaattttcaagatttgttTTCGACACTATTGCTGTTATTTGCATTTTG
TTTCCGCCTTAAGGAAGCATCGAAATGCAAGCGCAAGgttcCAGAGAATA
ATCATGGCATTCAACCAATCACATTCATCAACCAAGagGACGATTTGAAA
AGGGACAATTTGTTGCACACATTCCAAGTCCTTTCAGCTGAATGGATAGT
TCAGTTCAAATTTCATTTAACAACGATCAACCCTGGTTGGTGTAATATCA
TATTAATGACAGCTCAACCAGACTCAATTCATATTAATTCTCCCAGATAT
GGTTATCGTGCTCCCTCCGTATATATCGACGCACaaaataacagGTTTGA
GATCTCAAACTCTGTCAGTGGAAGATCGCAGTACTCCTATTTTCATAATG
GCTTGACACAGAAAACAATCTATGAAATGGAGCTTCATCAACGATACAAG
AGGGGAGGTGTTTATAAATATTCGATAATTATAAACGGTGAAGAAGTCCA
CACGGCCGATAATACGCAAGCTGAACAATTTatgaattttcaagatttgt
tTTCGACACTATTGCTGTTATTTGCATTTTGTTTCCGCCTTAAGGAAGCA
TCGAAATGCAAGCGCAAGgttcCAGAGAATAATCATGGCATTCAACCAAT
CACATTCATCAACCAAGagGACGATTTGAAAAGGGACAATTTGTTGCACA
CATTCCAAGTCCTTTCAGCTGAATGGATAGTTCAGTTCAAATTTCATTTA
ACAACGATCAACCCTGGTTGGTGTAATATCATATTAATGACAGCTCAACC
AGACTCAATTCATATTAATTCTCCCAGATATGGTTATCGTGCTCCCTCCG
TATATATCGACGCACaaaataacagGTTTGAGATCTCAAACTCTGTCAGT
GGAAGATCGCAGTACTCCTATTTTCATAATGGCTTGACACAGAAAACAAT
CTATGAAATGGAGCTTCATCAACGATACAAGAGGGGAGGTGTTTATAAAT
ATTCGATAATTATAAACGGTGAAGAAGTCCACACGGCCGATAATACGCAA
GCTGAACAATTTatgaattttcaagatttgttTTCGACACTATTGCTGTT
ATTTGCATTTTGTTTCCGCCTTAAGGAAGCATCGAAATGCAAGCGCAAGg
ttcCAGAGAATAATCATGGCATTCAACCAATCACATTCATCAACCAAGag
GACGATTTGAAAAGGGACAATTTGTTGCACACATTCCAAGTCCTTTCAGC
TGAATGGATAGTTCAGTTCAAATTTCATTTAACAACGATCAACCCTGGTT
GGTGTAATATCATATTAATGACAGCTCAACCAGACTCAATTCATATTAAT
TCTCCCAGATATGGTTATCGTGCTCCCTCCGTATATATCGACGCACaaaa
taacagGTTTGAGATCTCAAACTCTGTCAGTGGAAGATCGCAGTACTCCT
ATTTTCATAATGGCTTGACACAGAAAACAATCTATGAAATGGAGCTTCAT
CAACGATACAAGAGGGGAGGTGTTTATAAATATTCGATAATTATAAACGG
TGAAGAAGTCCACACGGCCGATAATACGCAAGCTGAACAATTTatgaatt
ttcaagatttgttTTCGACACTATTGCTGTTATTTGCATTTTGTTTCCGC
CTTAAGGAAGCATCGAAATGCAAGCGCAAGgttcCAGAGAATAATCATGG
CATTCAACCAATCACATTCATCAACCAAGagGACGATTTGAAAAGGGACA
ATTTGTTGCACACATTCCAAGTCCTTTCAGCTGAATGGATAGTTCAGTTC
AAATTTCATTTAACAACGATCAACCCTGGTTGGTGTAATATCATATTAAT
GACAGCTCAACCAGACTCAATTCATATTAATTCTCCCAGATATGGTTATC
GTGCTCCCTCCGTATATATCGACGCACaaaataacagGTTTGAGATCTCA
AACTCTGTCAGTGGAAGATCGCAGTACTCCTATTTTCATAATGGCTTGAC
ACAGAAAACAATCTATGAAATGGAGCTTCATCAACGATACAAGAGGGGAG
GTGTTTATAAATATTCGATAATTATAAACGGTGAAGAAGTCCACACGGCC
GATAATACGCAAGCTGAACAATTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1077MSTRG.1077Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1077.2.p1MSTRG.1077.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1077.2.p1.exon1MSTRG.1077.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1077.2.p1.exon2MSTRG.1077.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1077.2.p1.exon3MSTRG.1077.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1077.2.p1.exon4MSTRG.1077.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005_pilongenomesc0000005_pilon:1864651..1868310 +