MSTRG.10681.1.p1 (mRNA) -

Overview
NameMSTRG.10681.1.p1
Unique NameMSTRG.10681.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000075_pilon:304434..308871+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10681.1.p1 ID=MSTRG.10681.1.p1|Name=MSTRG.10681.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4438bp|location=Sequence derived from alignment at sc0000075_pilon:304434..308871+ (Clytia hemisphaerica_ch_hm2_pilon)
atgatattcattgaaacacgCTTCGTCGTGTCCTGCGGTGGAGtacatga
cgtaactcgcgctgCAATTAActtgccttctgttggaagatcatattggg
cgctttgtctttccgcaactctttccaccattttagatggccttaacaat
agatccaaaagggcaccataatcttggaagataatttgttttgtctttgg
gatcctggatggtttccctaactgaagcTAGAATTGCCAGCAAATcggtt
tttctcaaatttctggAATTGTACTTGTCTATTTGTCAtgaaatattgac
aacaaagctctctttaaatataattttgcattttactttgatttttcaCG
AAGATATATGAAATATTATTGATGTGAGAAAACACCAACAATAAGGATAC
ATTCATTAGACAAAATGGGTAAGAATTCACTTTAACAAAGTATAcaatat
aaaaattataattttttcaaggTTGTTTTTGTTATGAAACTAGTCTCGTA
TTTGTAACTTTGTAGATTTGTTCTttatgtttcaaatttttaaatagggg
aaaaaactgaaaaaaatacttagaaaaacTCTCTAAACGATGAACTTACA
CTCCTCAATCAGAAAAGTCATTTTCGAACTGTAAGTTTTGATTTCTTGAG
AAAatctttgttattgaaaaagcttctttcaaaaaactcaaacttttttt
tgacagAATCTGACAGAATtcctttaatttgaaaaaaaaactttaaagat
gaatatgaaatgaaattaaaatgattaCAATGAATCAGTGATCAAAATGG
CTAGATGTGTATTATATATCctttatctgaaaaagctaattaaagttcca
gaaattcagaaacatcaaaaacattcaaaccaaaaaaGGAATCATATCAC
AACTCAACTTGACAAGGAAGAATAAGATATTTTAGTTTGTCTTAAGGCTT
GGAATAGTCTTATTGAAATAGGATCTTATCTAGGATCAGATCAGGGggat
aatttattttatttaaattatttgatactttcaaattaattgattttagt
aaagaaaggaaaaggaaaacaaagTGAAGAAGGTATGTAATGATAATTAC
TTGCTCAGATTATTTTTCGcaagaattaattttcagctgaAATCAATTTA
AATGGCCCTGAAATTGCCAATTTCTCACAAATAGCATATTTAAAGAAGGT
ATTTTTAAGCCGAATATCTGAATTTAAAGATTGCCTGGGATTGATTCTGT
GAGTTTTATTTCATCATCATAAAAAAGGCAAAAGTTTGCAAAAATGCAGa
atttaaatcttaaattaaTTCTTTAAGATATTGTTCTTACtaaaatcatt
ctttttttatcattccTTTTGTTGGAGGAATTGCTCTCCATATGAAAACC
TTTTGTTACCCTCTATAACCACTGTTGCTTTAAAATTTGTAAGAGGtctg
aaattttataaaatgttCGAATTAATAGAAGCCAGTTTCCTATTATTAAA
AATGACTTTATTTTCAGCAATAAAATCATATCCAAAAGTTTTGAGGGGTT
TTAGAACATTCTAATTCTCCAATTCTCTTTTGTAATAGCAACATTTCTAG
TTTAACATcctatattttatttttcgtcTAGACATAAAGATTCCACCTtc
tgacatttttatttttccaaatgGTGATAAGTATGGTACACAACAAATTT
TAtgggattttatttttaaatacattATCTGGAATTTATCTGAATGAAAA
TATGcgaaacaatatttgtattaTGATGTGAAGTCATATATCCTAGTTcc
agaaatatttttctttatggTGGGAACAATGACATACATGGAGAGTTTTC
TCACCTTATTATCGTTACCTCATTtaccttacacgtttttttataagaac
attcaaaaattttgaagcctttggatgctcttaacttttttcagtttcaa
gcctaaaaattttcttaacatgttcttaattttgccattttgtgggtgtt
tttgccaaatttcaagaaatttggtgttttagagtccacaaagccttaaa
atatccttaacttgttcttaatatcttggccatcgaagccttatattctt
atagtttgttcttataaaaaaacgtgtatctttcCTTATCCGATTTACCG
TAATTACCAACTcaactttaaacaaaaaaacgCTTTGCATTATTAATTCA
ATATATATTTTCAGAGGGGGATTTTTGCCAGTTGTCTGACGAGACCATTT
CACGATGTGGAACAGGAAGACATACAACATATGATGGAATTATTATGGAA
GGCACTTGGGAGAACAATAAGTTAAATGGGAAAGGTACACCATTAGCCTA
CTATCATTTGAAAAGATTTGGTTCAAGTTTTCCAGGAATGACATCAAAAT
GTCTGTATCATTACAACGACTTTAAAATAACCTAGTCTCCTGGGCCTGGT
TGTTCAAAAGTGAATTAGCGGCCGATTAGcttaatttttgattaaatcTC
GATTAGCGCCGATTAGCACAGGACCGTCGGTTGTTCCAAAAATAATAAGC
TTAAATCTAGATTAAATTCCAAGATTTGGAGATATCAACCTAATttgctt
cattttctttttcactgcCAGGTAAGATTGTCCATCCTTCAGGAGCATGT
TATGAAGGTGACGTTCTGGATAATATGATGCATGGTCAAGGAACCTATGT
ATTTACTGATAAATCGATCTATGAAGGCCAATTCAATGAAAACAGGTACA
GCTATCGAGTCATTTTTTGGCAAGGTCTTTTCAGTTATTTTCAGacattt
tatgttttgaatGGATACTCAAAGTAGGGACAACATGTACCAGTCATGAA
GATGGTTCAATTCAAGTCCCTTCGTTGAGTTTGCACACTTTTTTACTACA
ATGTGGAAACCATCCTCAAGACAATTGGTCTAATAACCTGACATCGTTTA
CACATTGTAGTAAGCACACCTAAAGTGAAAGTGGTTTTGGCCGTTGCTAG
TTAGGCTTAATATTGATGAATACCTTGTTTGTGTAAAACTTGACAGATTC
CCTCAGAAACCTGATATTGATAAATGCAATCTCCATTTCCTATACAGGTT
AGAAGGAGAAGGTCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTGGTA
TGTTTACAAAAGACTCAGCCAATGGTTTAGAATTCAAACTGAACATGTAA
AACGAGGAATAACAAATATTGCCCTGCTTGTTTTTTCTTCTATAATGGTT
CGTAGGTAATAACAATCAATGGCAACAACGATGTGTTAAGATTAATAAAA
TCTATACCAGACCACCTCCTCTGACTGTTACCATTTGAATTAGGTCTATT
CTTTTGGTTCTACAACCTGGCAGAAATATTCCAGGTGTAGAAATATTGTC
TTATATCTGTTGTTAGTAGTTGTTAGTTGTCCTGCTTGGGTTATTGCTGT
AGGGTGCAATACTGTATTATGATATTGTTTGTCGGTTTGTTTTATGATGA
GATGTATACAACTTTATggaatgcaattggttctttcgCATATTGACAGG
GCTTATTAGTATGGAGATTTGCCTGTTGtcaagaaaattcctttttgacg
tatttttttGCATAGAAAATTAACCTCGTTATCTTACTTTACCTTAATTT
TGGTTTAATGAACTTCCAACTCTAACTGTATATCTTTTGCAATTAAATAC
AAATGAGTTGAATTCAGGGCATATTTATCCGGGACACTCGATtaaaaaac
gaccatacgtgcggTCCAAAAtcaggcctttgaaatcggacccttacagt
gtagggGAAATTCGGATATATTTTGGGTGTGAGACTACTTTAAgtgtaca
aactttcgtgaCCAGAAACTTTCCCGATTTTTAGCGAATTTTACCCTTTT
TCGCGGAAGTAAAATTACAAGTTAAATTCTTAAATTATAagtaaaattat
tgaaaaggccattcgcgaaaaattcttgacaaaatagaaattctgtaaaa
cttctgaatgaaaataaaatgtgaaattgatggcactttttagcctgttg
AAGCCTCACAAGTTAAAACAACAAAAGTACCTTTCCAATTCAAGACGTAT
TTGTCCCATTTTTTCgtgtgaaaattttcataaaattttcgtcaaattcg
CgGaagtaaatgtcgtAGATTTCGTGATTTTTCGACCTCGCGAAAGTTTc
tactcgcgaaagtttgtacacctgaaGTATTCGATAGattaaattgtata
aaattGTATAATACTCATGTAATTTATGTTTCAAGACtttaagacaattt
ttttttgtttaataggATTTAAGATGTAAAGAGAGTTTTATCTCAAGTAA
CTTCTTCAAGTAAAGCCATATGAAAGAATTTATTCCAGTTTATTCAAATG
TTTTAATTAATCTTGTTCATAATACTAacacctttttg

Coding sequence (CDS) from alignment at sc0000075_pilon:304434..308871+

>MSTRG.10681.1.p1 ID=MSTRG.10681.1.p1|Name=MSTRG.10681.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2628bp|location=Sequence derived from alignment at sc0000075_pilon:304434..308871+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGtaaagaaaggaaaaggaaaacaaagTGAAGAAGACATAAAGATTCC
ACCTtctgacatttttatttttccaaatgGTGATAAGTATGAGGGGGATT
TTTGCCAGTTGTCTGACGAGACCATTTCACGATGTGGAACAGGAAGACAT
ACAACATATGATGGAATTATTATGGAAGGCACTTGGGAGAACAATAAGTT
AAATGGGAAAGGTAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGGTG
ACGTTCTGGATAATATGATGCATGGTCAAGGAACCTATGTATTTACTGAT
AAATCGATCTATGAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAAGG
TCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAAAG
ACTCAGCCAATGGTTTAGAATTCAAACTGAACATGTAAATGGtaaagaaa
ggaaaaggaaaacaaagTGAAGAAGACATAAAGATTCCACCTtctgacat
ttttatttttccaaatgGTGATAAGTATGAGGGGGATTTTTGCCAGTTGT
CTGACGAGACCATTTCACGATGTGGAACAGGAAGACATACAACATATGAT
GGAATTATTATGGAAGGCACTTGGGAGAACAATAAGTTAAATGGGAAAGG
TAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGATA
ATATGATGCATGGTCAAGGAACCTATGTATTTACTGATAAATCGATCTAT
GAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAAGGTCAGCTGACTGA
TCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAAAGACTCAGCCAATG
GTTTAGAATTCAAACTGAACATGTAAATGGtaaagaaaggaaaaggaaaa
caaagTGAAGAAGACATAAAGATTCCACCTtctgacatttttatttttcc
aaatgGTGATAAGTATGAGGGGGATTTTTGCCAGTTGTCTGACGAGACCA
TTTCACGATGTGGAACAGGAAGACATACAACATATGATGGAATTATTATG
GAAGGCACTTGGGAGAACAATAAGTTAAATGGGAAAGGTAAGATTGTCCA
TCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGATAATATGATGCATG
GTCAAGGAACCTATGTATTTACTGATAAATCGATCTATGAAGGCCAATTC
AATGAAAACAGGTTAGAAGGAGAAGGTCAGCTGACTGATCCATCTGGTCA
AGTGTGGTGTGGTATGTTTACAAAAGACTCAGCCAATGGTTTAGAATTCA
AACTGAACATGTAAATGGtaaagaaaggaaaaggaaaacaaagTGAAGAA
GACATAAAGATTCCACCTtctgacatttttatttttccaaatgGTGATAA
GTATGAGGGGGATTTTTGCCAGTTGTCTGACGAGACCATTTCACGATGTG
GAACAGGAAGACATACAACATATGATGGAATTATTATGGAAGGCACTTGG
GAGAACAATAAGTTAAATGGGAAAGGTAAGATTGTCCATCCTTCAGGAGC
ATGTTATGAAGGTGACGTTCTGGATAATATGATGCATGGTCAAGGAACCT
ATGTATTTACTGATAAATCGATCTATGAAGGCCAATTCAATGAAAACAGG
TTAGAAGGAGAAGGTCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTGG
TATGTTTACAAAAGACTCAGCCAATGGTTTAGAATTCAAACTGAACATGT
AAATGGtaaagaaaggaaaaggaaaacaaagTGAAGAAGACATAAAGATT
CCACCTtctgacatttttatttttccaaatgGTGATAAGTATGAGGGGGA
TTTTTGCCAGTTGTCTGACGAGACCATTTCACGATGTGGAACAGGAAGAC
ATACAACATATGATGGAATTATTATGGAAGGCACTTGGGAGAACAATAAG
TTAAATGGGAAAGGTAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGG
TGACGTTCTGGATAATATGATGCATGGTCAAGGAACCTATGTATTTACTG
ATAAATCGATCTATGAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAA
GGTCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAA
AGACTCAGCCAATGGTTTAGAATTCAAACTGAACATGTAAATGGtaaaga
aaggaaaaggaaaacaaagTGAAGAAGACATAAAGATTCCACCTtctgac
atttttatttttccaaatgGTGATAAGTATGAGGGGGATTTTTGCCAGTT
GTCTGACGAGACCATTTCACGATGTGGAACAGGAAGACATACAACATATG
ATGGAATTATTATGGAAGGCACTTGGGAGAACAATAAGTTAAATGGGAAA
GGTAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGA
TAATATGATGCATGGTCAAGGAACCTATGTATTTACTGATAAATCGATCT
ATGAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAAGGTCAGCTGACT
GATCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAAAGACTCAGCCAA
TGGTTTAGAATTCAAACTGAACATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10681MSTRG.10681Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10681.1.p1MSTRG.10681.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10681.1.p1.exon1MSTRG.10681.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10681.1.p1.exon2MSTRG.10681.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10681.1.p1.exon3MSTRG.10681.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10681.1.p1.exon4MSTRG.10681.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10681.1.p1.exon5MSTRG.10681.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10681.1.p1.exon6MSTRG.10681.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075_pilongenomesc0000075_pilon:304434..308871 +