MSTRG.10582.1.p1 (mRNA) -

Overview
NameMSTRG.10582.1.p1
Unique NameMSTRG.10582.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000074_pilon:41300..47427+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10582.1.p1 ID=MSTRG.10582.1.p1|Name=MSTRG.10582.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6128bp|location=Sequence derived from alignment at sc0000074_pilon:41300..47427+ (Clytia hemisphaerica_ch_hm2_pilon)
AACACCCCGATTTTGGACGGacaaaaccactttcgttttcagtcaGAATC GAGAAAAAGATCACGTTTTTCACGTTTCTTCACAGAAAATCAAACAACAA CAGTTCCACACATAGTCCACTTCTAATTTTggttttggaaaagaaaaata atctcACAAATTCTTGGGAAAGTAGAGTAAGTAATATATGCTTTAGTAGT TTGTTATTCAAACCTAAAACTAAAGAAGGTCTAGGATTTAAATTGAACCA GATTGAATTGAAAGTATCTCTTGTCAGCACTTGTCACCCAGGCTGGAATT AGTGAACAgcacgccgaatatattcgACGTGAAGCAGTACTTTTGGCGTA AGGAGTGgatataaagtaagatattgACGTAtgtcaaagcttttcaaggc GAGAGGGAGCACCGCCATTCtaacaaaaactttgagaaattgcctaaaat ttgagccatatatgaaaaaatttgagccaagccaaccttgaaaactaatt tgaagatcaacctcccaagaaaaagatctacgggggaagCGGAACCCCCC TAGATCCGCACACCACCggacagtctgggaaatcctctcaatcgcacgct tatgttccgagggcgtaagcgcgcaattccatggttataatttacgccct ctcccgccccggttgaaattgcttagggatttcaaggggttcagaattct ctaattcgggcaaaggcatggtttaacgggcaatccatttttacggaatc ttcttctacgataaattttgagtaaaactgccctaggcttttgaaattca acagagctttcggaaggaattgcgtgtcaaaTAATAAAGGGTTCTATTGC ATGCTTACCGCTTACCGCCCgcttcagaacaatttcgataagcgtgtaat tacacgcttaaaaattctgccattttgataaccgtgcaattgggcgctta cggcctcggaacataagcgtgcaattgagaggatttcccagactgataat gacccatttacatatgcggaattatttttactttagcgtataaaccaggc cttaaaaatggaagcgctgtcttgggaattgaatgacaaattttggttgg atgattttggctgctgcacgttttattttgtttcaaactttcaagtttta attaattgtcttgcgaacttgattcaggtaactctcatccttgttgtgca aatctagtcatctggggtaattacgggacagtTAAAATTAAGGGGTAAAT ACGGGACACCCCTAAAAATGGTGCTATTGTTATAAATTTGGATTCAGATG GAGAGGATTTTGGAGATAGTCATTCTAGCTGCTAGAAAAATGTCTAGTTA GATTATTCTAAcatatacttttgatgtttcaacaaaagtttcatatgtca ccataaaaatcaattttcgtagttttagaaggaacttttcaagctttagt gtcaggaagagctgcaatcactttgattatattttgactgaattctgGCA TCAAGATACTATGGTTTGAGATTATAATAGTCTCATTATCAAAACAAGGC ACCTTATCTCTAAAAATGTGTCCCATATCTACCCCGTAGtgaaatcttta attttgtcTGTGTAATTATGGGACACTAAAGTTTGAGTtcaagtgtttat tttttataagaaaagtacaaaacttgattttctagttTAATGGAATCATA ACTACACTCTAGTCTTTCAAAACCCTGCAAAGGTTTGCATCTAAAGTTAC TTCAGTTGGTCTAGATTGCTCTCGCAAATATTATGTGTTAAAGTGCCCGT TATTACCCCCAAATGGaaaaaaaaGCTGGGGTAAAAACGGGACACTGTCA CTAATTTTGTTGTGATGAAAGTCCTTTAAATGATAGCACTTGGATTTGAA GTCATCAAGTTGAatgcaaaacctcaaaatatcaTGACTTTGGAAAGATA TCtggatttttcaataacattttatacctgCCCCATATTTACCCCGAggg tgtcccgtaattaccccaaaaTGCGGGGTAATTACAGGACACctttaaaa tagattttaggAACATCTACTAAATTTTAAGGAAAAGTAATACATCTTAT GTAAAGGTTATACTTTgacaaataaaatatcaaaagatcggATCTCTAGG ATTAATTCTTTCAGAGTGATGCCCAAATAAGTCAAAatcgtcccgtaatt accccagatgactatacatcctgtagatgactgatgttgttttttctgaa agctaaatttcctagtgtgactaactattatcaagctagtatttcaatcg agtatatcgatttgtcatcgatcgttaatcgattcgtcatcgatcgttaa tcgatttgttatcgatcgtaaatcgagtatgagtcgatagggccAGACGA TCCCAATCGAACGGAaccgacgatcgaaccagtcgaacaaaaTCGACCGA ATGAAATTCGAttatcgaatgcaatcgaatctcaatcgaatattaccgca attttcagattcgattgatattcgattgagattagAGATTGAGAttgcca ttccagaaaatttctgttaatttttgttgaaattcatacattttcttctc tcgccttggaaatttcgaattttggtgaaaacttttgccctcggaaatcc tgtgtcgtccgcccccccccctgttacagacaaattctggaatggcccat tgtaaggcggcaatcaaaaatatcaaattcggtcggtcggtcggtagtaa attttgtccgatttttaagatctagtaaatcccGATGAATCAACTCTGCA ATCAACAAAATACTTATggctaaatcttcatgatgcaTGGACAAGCACAG AGACttagaaaaaattttgagactTTTCAATACCCTACCCTGGTTCGAAA CATGTAGTCTATACCACTGGGCCATGAGGGCTgctgattttctaaatttc aaggtTATTTATAGAGTGACATATAATATAGTATATATGGGTGAACAGAC CTcgcgagttaggctaactgttatgatTGCCATTCATCCAGGAAGACCCC ACACACGGGTGCACCACCTGGAGGATGCACAGCCGTCTGGGTGCaaggtg caaaatttgaggttttaaGGTGCAAGTGCCGACGGTTTTTAACCCCAAGT GCAGATTCTGCTATTTTCTCCTCaagtgcagctaattttagcaatCTTTT GCCTTTTTGAGCCATATGCGTATGTGCACCTTGTTTGGATCAAAATTCAT CAGGTGCACCCTTCCACAGTGCGGAACTTGGTATTTCCAAATTATTCCTT GAATGCTGCtttgccatactctgcaaactggccaAAATGTGtgtcaaaga ttaatgctgcgaaagtgCTATCATTTACttgacttatttttactttagca tttagacaaggccttaaaaatcaaagtgcTGTTtcaggaattgaatgaca aaatatttgcaaaatgcaaatttCAACAGTGAAATTCCTTTACATAATAC AGCTTGAAAgatctaattttaaattttatggataaaaagagacgaaaaaa gttctttttttcgGAACTaaaaaaagcgatgtcatgttgaataatttaaa acagcgttaaaacaatgataagaaaattGGTGCACACTTAAAATAATTAT ACATTAACGTGTAATTGGTTtgaagctggagtttttattgCCCGACATGA CATCACATCAAGCAGAAGGTATATTCAACTAGACTGCTAGCTCGCTTTTt gtgtgaaaattttcattttcatgtttgGATTattgcaaaagtttatgctc gcaaaaaaagTTGTTGTAAACTTCACTAtttttttACCTCAAATATCTGT TTGTATTTCATGATCGTTTCAgttttatttcaagattttagataatacat gtttttttttataagcatatatgttttttggaaaacaagctcagttatac ttagagatattttagactcaggctCGAAGTATGTTTATCATATGCTTATT TGGATCCgcttatttttctgaaaaattcgagtctccaatttttccaaaca cTGTCATTGCTATACATGAGGATAGGGAAATAAGACACAAAGATTGTTCA GGAAAGTTGTGAACCAATATGCGTTGACGCTTGCattctttttaattaaa attttcacttacacacctcaaaagcaagctcagtaatatgcttgtaatat gcttattttttagacaaattcaggTCTTGGTAtccttataaacgttatgc ttataaaaaaaacatgtatacctgtttaaaaataatatagatttttgtct ttctttgaGAAATTACCTGGGAAAttgacaaagtcaaaaaattaaaaatt tggatATCTCAAAAAGTAACTGGTCAAAAGAGTATGAAATTTAGCCTTGA CCAGTTCTTCTTCTGAATATAATCCTTCGATCACCTggtatttaaaattt atttgttaattttgttttttgacaaatatttcTTGACATAGTGAGTAACA AACAGTCCAATTTGTTGTCATGATGTGATCATCTCTAATCAGTCTGAAGT GGAGTATTCCAAGTCATCCCATGCTTATTTTAATATTCATCTTTTTCATA GTTTACACTCCCCCTAAATAAAGGGGGTAGCAATGttccaaaaatttcat aaaggGTTAGAGAGTTTTTGAGGTGGTTTTGAAAGTGAGGGGGTGGTAAA AGAAGAAAGGGGGGAGTTaatatgtcatttttttttcaatttaattatGT GTATTATACCAGTGCTGGTTGTACATTCTGGTACATTTTGAAAGAAGTTC ACTTGGATGAAAGCGTACACAGAGTTCACATTTCCTTATTATTTGCTTAT TTACACTGTTTGTTCTTGCTTTCTCACCAGTAGAATCATGGtaggatttt aaaaatttgaaggggggggTAGTATCAAATGTTAAAAggggaagaaccta gggtaggggTAGTGATCCCCTTCCGAACTGTGTGTTTTGTACAGACTCAA AGCACATTTTAGGATTGTGGAAGAAATGATAATTTCCAGCCTGTTCAGTT GAGATAAATTCAGTTGAGAAAAGACTTCACTCATTGATTAAATTCATAAA CCtttttttAGAACGTGATGTTAATACCATGTGTACTGTTACACATGTAC TAATTCTTTTTGGATATTTCAAAGTGGCCACTGCATTTTATTGGCTTTCT ACTAACAAATTTTGTCCTCTTTGAAGTATTGaaccatttttctcaaaagt ggTGATTTTTGCAACTCTAGAAATTCATTTTCATACAAATTGATACTTTC AAACGTACTACTTTATAAATTGAGAAAACATTTTAGACATGTGACGGAAT GCCAAAATTGCATAGTATAGTAATTGTTGATAATTGTTGAttaattcttt gtttttttagaaaacgaATACATGTAATGTTTTGTCGTACAATCGTTAGC CATGTGCTACGCCAGACCACCAAAGCTTATCTCCCTGTTCAAGAGAGAGC TTTTCAGACTGGTTTACTGAGCTCTTTAAATGCTACGAAAACTGTCCATC AACAAGCAACAGGAGCAAGTGTATCAGCTGAACACAAAGATGTCAAACAT ttgagaaaaacatttgaaaaggtTGAACTGGAATGTCAAACTGACTTGGA GAATAAGAAATTATTTGCTGTTGTACATATTTCAGGAAAACAGTTTAAAG TAGCGCATAATGATGTTATTATGACTAATAATAAGATTGAGGCAGAATGT GGTGATACTATACGTTTGGAAAAGGTACTAGCAGTTGGAGGACGAAATTT CACATTGCTCGGTCAACCCTTATTAAAACGTGATCTGGTGAACGTTGAAG CTATGGTGATGGagaaaacaaaaggagaaaagaaaatcgccttcaaaaag aaacgacgaaagGGTTACAAACGTTGGAAGGGACATCGCCAGGACCTTtc agttttaaaaattaaatccaTTAATTTTGATAGCTCAGCTTTGTAGtgat attatttttatataattactttttagtattaaactttatgaagcaaatat tttattCGacagctttaaaaaaaagaattttatttttgtctattaATAAC TTACTTGCTCATATTGATCGTCTCATTT

Coding sequence (CDS) from alignment at sc0000074_pilon:41300..47427+

>MSTRG.10582.1.p1 ID=MSTRG.10582.1.p1|Name=MSTRG.10582.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=570bp|location=Sequence derived from alignment at sc0000074_pilon:41300..47427+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTTGTCGTACAATCGTTAGCCATGTGCTACGCCAGACCACCAAAGC
TTATCTCCCTGTTCAAGAGAGAGCTTTTCAGACTGGTTTACTGAGCTCTT
TAAATGCTACGAAAACTGTCCATCAACAAGCAACAGGAGCAAGTGTATCA
GCTGAACACAAAGATGTCAAACATttgagaaaaacatttgaaaaggtTGA
ACTGGAATGTCAAACTGACTTGGAGAATAAGAAATTATTTGCTGTTGTAC
ATATTTCAGGAAAACAGTTTAAAGTAGCGCATAATGATGTTATTATGACT
AATAATAAGATTGAGGCAGAATGTGGTGATACTATACGTTTGGAAAAGGT
ACTAGCAGTTGGAGGACGAAATTTCACATTGCTCGGTCAACCCTTATTAA
AACGTGATCTGGTGAACGTTGAAGCTATGGTGATGGagaaaacaaaagga
gaaaagaaaatcgccttcaaaaagaaacgacgaaagGGTTACAAACGTTG
GAAGGGACATCGCCAGGACCTTtcagttttaaaaattaaatccaTTAATT
TTGATAGCTCAGCTTTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10582MSTRG.10582Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10582.1.p1MSTRG.10582.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10582.1.p1.exon1MSTRG.10582.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10582.1.p1.exon2MSTRG.10582.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074_pilongenomesc0000074_pilon:41300..47427 +