MSTRG.10506.2.p1 (mRNA) -

Overview
NameMSTRG.10506.2.p1
Unique NameMSTRG.10506.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000073_pilon:612774..621116+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10506.2.p1 ID=MSTRG.10506.2.p1|Name=MSTRG.10506.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8343bp|location=Sequence derived from alignment at sc0000073_pilon:612774..621116+ (Clytia hemisphaerica_ch_hm2_pilon)
TGAAAAGATGCTCCAGGTAGAGGAAAAAGGTGGCGATGCCATCTACGGAA AATCACGGAACTAAAATACGACGTATTTATAGGTCTCGCACTCTTTTATT AACAATATAGAAGTgcctatcaaaacaaaagatagagAGGACCACGCAGA ATCGCAGAATCGCAGATGAGTActtttgacccaaatttttcGCTTTATTT TATGGCTTTCTCAACCCACCTTTCGAGCAGATTTATGGTATAGATTTAAG TATTTTCTTTATCATTACTCTAACATTCAAGTAAACTTATTGGCCTGATG ccgataaaaaataaaaaatttctgtgAAGCCTTGcctttttctcaagaat ttctGCATGCTGGTTTTTTATCTCTTATAGCGCCTCTAATTTTCATGCCT CTAATAGGATATTTGCGCTCCCTCTCATTTTCACAgattatgaaattttt ggcaTATTTTCTGAGTGTTTTTTATGATGATTATAGGTAAAGAAGGGCAA AAAACACATTTAATCAGAAGTTTAACTCAATCACTTTACTTTACGTGTGC CATCACCATCAGGTGCCATTTAAGCTAAAAATTTTACATCCCAGACAGTC AGTCAGGAGTTTTTGCCTAATTAGGaaagtatagaccttttttcaaagag gccaccctgttgaatgaataattatgtagtacAGCAGAAAAACAGTGATA cacccatgcataattattacaatatgcacgAAACagtaatacaccgttta ggagtatcgactgcgcacgcgtcaatccaattttccattgtttgaATTTT AGCGATCAcagaaaattcactctcctccgtaaaaaaacagtaggtaaaca tctggttctcataaggaaacatagcagaaaaatgGTAGGGAAAGAACTCc ctttaatcataacttcttttcctcttgatgaatttttgtgaaattttcag gagagacttataaaattatcattgatatcatgttcaaatatctaaatcat tctctttaaagtagagaaaaaaattcacaatgtttacattcctctaacct ttcacagtactaaagtgcgcatttttacctaccatttttaccggacctct gcaatggagtaccgtgaaatagcgagactcctaaacggtgtattatgcat tgctgtatcattgtttgtatGGCTGGCCGTTAGTCAAACTAGCGTCCCGC GAATGCGCTATATCTTTTATTACTTGACtctcagcaaaaaaatgcaccgc aaaacttctaaagggattcatgaaaaaataacctagcgctttttaatgaa attagcagtccatcacaaactgccatataaacaaagctcaacattctcac aaaagttgtctttttgatttcccaaattTCGTCGTAAGCATTCACTTTCA CAATAataacaatccgggggtaagtggcgaagcaacacatCAGATTAAtc cagtctgggaaatcctctcaattgcacgcttatgttccgagggcgtaagc gcgtaattgcatggttataatttacgcccgctcccgccccggttgaaatt gcttagggatttcaaggggttcagaattctctaattcgggcgaaggcatg gtttaacgggcaatccatttttacggaatcttcttctacgataaattttg agtaaaactgccctaggcttttgaaattcaacagagctttcggaaggaat tacgtgtcaaaaatataggaaattttaaagcatGCAATTACACGCTTACC GCAAAAGCCGTCACCCGTCAATcttgcttaacgcttaccgcccgtttcag aacaatttcgataagcgtgtaattacacgcttaaaaattctgccattttg ataaccgtacaattgcgcgcttacggcctcggaacataagcgtgcaattg agaggatttcccagactgtaatcgtaaagtaaagaaatatcttttgacat tgacaatcgaatataatatattacatatatttcctttaattcaaaaatta aaaattcattttgcattcattcgcgaaaaaagaaaataatgataatgaat taatattacatactaagacgcccccgtcttttactctggcctaatttccg atctcggaacgtgaAAAACGCCCATCCGCCCAATATCTACCTAATCAGCT TAAATttactttaattgtcctttgactttcaaaaaatagtatttaaaaat tatgaatttataataattacaaaaaacaaaaagtcagatacttcattagt gaaatattcaataaattcctagtttcaattttcactgggcgtttttctag ggcttcgtttatcgcccAATTtctgcgtcacacaaactttctaggccgct cgtaataattatgcattgccaaatttggttcacCATTGTCAAGACAGGAt tgatggtgacgtcacctaagcataaaaaagaaaggattccGTCAggttta tgcatatattaatttgcgagatattctattcgccgcgtgAGCGCattttt cgtagactagtcggaatactttcttttactcgcgggattgatggtaactt ttcatcttcgtttttttttaaatgaagcacaaccgaaaaaaaaaaaattc aaaaagttgcgtatttccagtgagtaaatgATTCTGagaattaacaaaat tgatgatgatgattttttttcggtcaggcaaatgtctcgtattgggggtt ctagtcttgacccctaagcctacgcgagattgaagcgtttgggacaaaac tccaaaaaagctggtgttttgaagcgcttccgtgcgatcgaaatatcgct gtttgtgacggactgattagcattttcaaaaactttgagaaattacctaa aatttgagccatagatgaaaaaatttgagccaagccaaccttgaaaacta atttgaagatcaacttcacaagaaaaagatctacgggggaggcggaaccc acctagatccgcgcaccaccggataggctatttcccggaaattttgccgg acctcagacaatgacccatttacatgtgcagaattatttttactttagcg tataaacaaggccttaaaaatcgaagcactgtctcgggaattgaatgaca aaatttggttggttgatatttggctgctgcacgttttattttgtttcaaa ctttcaagttttaattaattgtcttgcgaacttgattcaggtaactctca tccttgttgtgcaaatacatcctgtagatgactgatgttgttttttctga aagctagatttcctagtgtgactaactggctggactacataattattcaa cagggttgcctctttgaaaaaaggtctattttatgattttcctGACTTTT CTAATCAGGACACAGGAGAGCCTTTCCTAATAGATGTTTTTGCTAACGCG ACAGTtatttgaataactaattactccacagcagttaggcggcaatcaaa aatatgttgcgTTCAGGTCGTCCAACCGactgtttatttacaagaaaacc cGATTCGGAAAGTCGGTAAAATCGTCGGttttttttGGCGCTGTTTGCAG GTTCGGATCTTTCCCATAATGGCGGGCACAGACGAACGGAGCATCtcttt gaatcattattttttgtttacttaacccacattgagtcccgttcaagttt tttcatgtacccttattgaaattttcatgtcaaaattcaGCAATGCGGTA GGGCCAATACCGTGGGGGCCGAAAATAAGGGCTGCTTTAAGGTTAACGCA TGCGTGCGcacatttagtttggcaaattaaagatggcggcataagattct attgttattgattgccgacttgattcatcgggatttactagatcttaaaa atcgGAACGTAATCGAATCACAATCAAACGgctgattcctgggtaatatt cgattgtgttcgagtaaggttagattggttcaaTTTATAATATAGTGATG AAGTTTCAGCttttgctgagattatgttgagggtagtgttttgatccatg agagattttcaaacttttcttagatatAATTGACTATGTtttattggttc gattgattgtcaattacattcaattaatcttcgattttgtttgattacga ttatgttcaatgagtttgattgcaattaaattaaattggatcactccatT AGAGCTTTTTAGCCTGGGCGGTCGAGCGCTTAAGTACCGTacaaaagcga ataaaatctaatacaattgaatcaattgaacgtaatcgaacataatcgaa tacaattgaaCATAATTGAAGCAATCGAATTGACTcaattgcattcaatt gatttggcattcgattcgttcgattgacaccgtcgtCTGGCCATTACTTT TAGTAAGTCAAAATTGATCTATGTGaagaaatgtttaaaaaaatatgaaa tcaaatGGGCGGAGCATTGAGATACCATTGGATACCCCTTTAAAAAACCT GCTAcaaaaaaaggtaccccctatatcctgatagagaaaacagtaagggc tgaaactttttctggtgagtctaggctatctatgaatttcttccctgggt atggtattttataaaagctgctaagaaaatttttattgcttggtgaaaaa atgcaattttagcgatttacCCCTTAacacctacaaaatggttttcttga ataaatttttataaaataatccttttggtctcaaattttaaacatggatt cactgcaaagttactaatgctacaattagatcattggtacctaaatattt tcaaaactgtacgttaaaatcaaattacatggtgaattgcagaaaaataG TACAATGTCCCGTCTGCATCAGTCACTTTTTGAGGACCCATAACTCAACT TTGGCAAATGCAATTTCTAAGAACTTCACATTTTTGTGAACTCTACTAAA TAGCCTTCCTTGGATTGttatagaatttttttgttacagccccaatcttg agaaaaatgttGCTGACGGGACAATTTGTTGCAGACaggacaaaaagttt ttcactcaTAGCTAGTACATgtaaagtcaagaaaaatgataCTGCTGCAA AAAGCATGTGGTTCTCTATAGTTCATTGGCTTGATACAGTTAGAACATTA AAGTTGtctcaaaaaaagagaaattaagaCTTTTGTGCCGTTGCGAACGG GACAAATTTTTGGACCGTATTAGTTTTTACcagttaaaaaattcaaaata gatTATTTAAAGGCAATAAATGTCTGTAACGCAAGAAACCATTTAATATg ccacaacaaaacaaaaaatggggGTCCTCTAGTTCCCAGATCAACAAGTA AGACTGTTAGTGTACACTAttatagagatattggacagtctaaaagctaa tcacgacacttggacttagaaattttgcggtaaagcgcaaattattgtca aagtaggatttctgaatgagtctaaaaagtttttgaataggaattaagta ctgttaaacccatttagttgaagtagcctgcttatatttaagattattat tcaccaaactgtgaaaggttgaggcgtTTCCTGGAAATATGGGctctgga atggtaggaaaggccagatgccagtctcatttttttacatattctgtact tagaaataaagaaacagtcataaaatgtcatctgttgatggaaatgacct gaaatctttttcagttgatcccctaatgccaatgattagttggctagaga agatcaaccaatattttgacaaaaattatcctgttagagcccttaagtgg gcctgatttagcattttacgagggagaaaacaacgaagttaagcaaattt tcaatcgatcatatctttaagagacttcaaaagcccattgagattttttt gaggctataaactagacctactaaggaagccttgctgaaaatttcaaaaa aatttggtgttgccttaaaaagatacgccatcttgaattttgctccaggt ctgccaaaatagcaattttttcggccatttttgacggttacgcaaagatg gaaatcctgaaaatgttatttttgtggccaaaacccaccagtaaaccact ccaggtcaaaagtttacttcaaaaaagtcccaaggaccatcagcagccag ctaaaagtgcttccaaacccagattacgcaaagtttgaagccctctacag gaggtgctagagattttcggggaaaattttggagactcaatttgattttt tctgattccctacaaaaagctcttgaaatccactgtaaatcagctttcta atgtacttgaataaaaattcattggctttcaaaatctgctccccaccaga gttcatgatttttaggggtcaattttgtcttagtagcctatctttgagac actgtatcttcaaaactacttgagatatcaaggtgaaattttcagggtct tattttcttgtgtgatagatcatttggtctaaatttcagcaaaatccaag agggtgaggtatcacaccctgaagactcttaaaaaaaatggctcttaatg gGGAAAAATGCACAAATCTGTATAAATTTCCCTTCAAGAAAgacatagaa aaaaattgtttttttgacattATTCAATTGACTCGGGAATTCAAGAActc tttttcattgtttttgcttTGTCCCAATAGAAATATTGACAtgttaaaat acttttatttttggctgtttttttgtgTAAATCTCTCAACAGTTTGGACA GGTGGGGTGTAGCCAACTTTTTCAAGCCACTCAGTgatttttaacttaaa aaagtcCCAAACTGGCCCAGGCATGTTCAGACCAGGTTTTCAACgaagaa aagcaaaaatttcaGGGTAGCTATGTAGGGGCCATGCCATGGGTCGTGTG TAGGACATCAACTATAATCATGGATGTATATATGATGACACTTGCCCCAA AGTTAGCAAGGACaggggaaaatttttaattaaaatggtGCGTAGAATAG ATCTTTATCAGCTAAACTACCCAATTTGATGATTACCTTAttgctaaatt ttgattgggTAGTAGATAAGTATTCCAGCTAGACCgtaagatttccaggg ggttcgatttactttttcttgagttgatttttactttagatttttataag aatgaattTATGAAATAAATCTGCATTTTTTAAAGGACATTTTCTCTCTA CTATTCTTAAAAAACCATTTTATAATTGCCCTGAGGATATAAGATGATTT ATAAGATACTATAAGGGAATAATTTATTGGGAAAAAAGTGTTGACAAACA GTGCTTGATATCAAGAGGAGTACATGGAGGAACtgattttggctgaaatt tcttaaaattggaaaaaaaggtAGATGCTAAAAGGGTTAAAAGAGTGCTA TATTTTCATTTAAATATCTTGAAAtaaatcttcaatatttttacTACTTA GACTACACTGGAACTAATTTTACACCTCAAATTATCAATGTCCTTTCCTT ACTGATAAATATTCTTATCATTTTGAttagataaaagaaaaatgtcGAGC TCTGAAGATGAAGATATAAATGAACAGCAACTGAAAATCACATTGGTTGG AGATGGTACGGCTGGTAAAACTTCTCTTTGTACGCGGCTTGCTcaagaaa attttgacaaacaatACAAACAGACTATGGGTTTGGACTTCTTCATGAAA CGCTTTTCTTTACCTGGAAATACAAATGTCACTTTACAAGTTTGGGACAT TGGGGGACAGCAGATTGGTGGTAAAATGTTAGATACATATCTGTATGGGG CCAATGGAATTCTGTTGGTCTATGATGTCACTAATCataatagttttgaa aatttacaagaCTGGTTAGAGGTCATTAAACAAACTTATGCCAAAAGTGA AAAGAAACCATACCTTGGTTTGATTGGAAATAAAAAAGACTTGGAGCATT TGCGCACagttaaaagagaaaaacatgTTGAATTTGCCCAAGAAAATGGG ATGGCAAACTTCTTTTTATCTGCAAAATCAGGTGATCaagtgaatttttg ttttcaaaaaattgcagCTGATATATTGGGGATCAGATTGTCAAAACAAG AGGTTGAGCAATCTAATCGGGTGATTAAAGCAGACATTGTAAATTACAAA GAGATGGCCACACCTGCACTGCACACTGGATCGAGTCATACCAAGAGCTC ACTTTGTTCTattcaatgaatttttattacttcaaaaaactaaaaactat aTATCAGAGTGTGtttaaattttaatcttttttaactcaagcacatctta atttattgattttagcattttatttCTTCTAGAAATgacaaatatttatt tattttcaaccaGATTGATTAAAAGACACATATTcgcttcaaa

Coding sequence (CDS) from alignment at sc0000073_pilon:612774..621116+

>MSTRG.10506.2.p1 ID=MSTRG.10506.2.p1|Name=MSTRG.10506.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000073_pilon:612774..621116+ (Clytia hemisphaerica_ch_hm2_pilon)
atgtcGAGCTCTGAAGATGAAGATATAAATGAACAGCAACTGAAAATCAC
ATTGGTTGGAGATGGTACGGCTGGTAAAACTTCTCTTTGTACGCGGCTTG
CTcaagaaaattttgacaaacaatACAAACAGACTATGGGTTTGGACTTC
TTCATGAAACGCTTTTCTTTACCTGGAAATACAAATGTCACTTTACAAGT
TTGGGACATTGGGGGACAGCAGATTGGTGGTAAAATGTTAGATACATATC
TGTATGGGGCCAATGGAATTCTGTTGGTCTATGATGTCACTAATCataat
agttttgaaaatttacaagaCTGGTTAGAGGTCATTAAACAAACTTATGC
CAAAAGTGAAAAGAAACCATACCTTGGTTTGATTGGAAATAAAAAAGACT
TGGAGCATTTGCGCACagttaaaagagaaaaacatgTTGAATTTGCCCAA
GAAAATGGGATGGCAAACTTCTTTTTATCTGCAAAATCAGGTGATCaagt
gaatttttgttttcaaaaaattgcagCTGATATATTGGGGATCAGATTGT
CAAAACAAGAGGTTGAGCAATCTAATCGGGTGATTAAAGCAGACATTGTA
AATTACAAAGAGATGGCCACACCTGCACTGCACACTGGATCGAGTCATAC
CAAGAGCTCACTTTGTTCTattcaatga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10506MSTRG.10506Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10506.2.p1MSTRG.10506.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10506.2.p1.exon1MSTRG.10506.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10506.2.p1.exon2MSTRG.10506.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073_pilongenomesc0000073_pilon:612774..621116 +