MSTRG.10502.1.p1 (mRNA) -

Overview
NameMSTRG.10502.1.p1
Unique NameMSTRG.10502.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000073_pilon:572304..575897+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10502.1.p1 ID=MSTRG.10502.1.p1|Name=MSTRG.10502.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3594bp|location=Sequence derived from alignment at sc0000073_pilon:572304..575897+ (Clytia hemisphaerica_ch_hm2_pilon)
TATCTATCTATAGGATGTTGGATAATATctttatgaatttattttcagca
aaaataacAATGTGTTAATAAATATTATGTTTCATGACATTACATTATAA
GAAACTGTCATGGGAGGTGTTGTACCGAAAGGCAAAAATAATGATGAACT
AGTTGATAATTTGATTGAAGCGAAATATTTATCTGATCCACGAATATGTA
GGATCTTCAGGCAAGTTGATCGAGGAGATTTTTACCCTGGTGAATATTAT
GAAGATGCTTATCGAGATCAAGCCATGAAATCTGGTAACCTTCATCTGAG
TGCTCCTTGTATTTATTGTTCTGTTATGGAAAACATGGACTTGTATCCAG
GTAATGccttgtattttttttatttattgctgTCAATTGAGTATACCAGT
CCATTCTCAATGTTTTATATTAATGATATTTTAATCCTTTTTAATGGCTA
TACCATTAATTGTTACGAACAAGACTGAAAAATCTAATTACTTTGAACAT
CTAAACCTTCCGAAACTTCCCAAGATCTATATACATCATCATTGCCTCAA
AGTGTTTCGTCATATCGCTTGTCATAAAGTATGTTTTGCTGTTCTATTTA
CAGGTCTGTCCTTTTTGAATATTGGAAGTGGTACAGGCTATCTTTCAACA
ATGGTAGGCCAAGTGTTAGGACCATTTGACACGAATCATGGCATTGAACT
TTTTGAAGATGCTATAAACTATTCGCAATCAAACATCGAACGTTTTATGA
AATACAGTGATGGTTTTCAAGTGACACATTTTTGTAAACCTCGTATCGTG
CAAGGAAATGTACATTCTTTCGACATCACTTTTCGTCAGTACGACCGTGT
GTACGTTGGTGCAAGACTGATGCATTTACATATGAAGGAGAAAATCAAAG
AGTTGGTCAAAGTTGGTGGTGTTCTTATCTTCCCAACTGGTGAAAATGTA
AGTCATGTTGCTCCTCgttctatttcaaattattttcaaatttcacaaaa
acgtAACAGTCACAACAGCTATTAAAGAAATGTTCAAACCGGTCCGAAAC
TCCCAAACATATCTTGATCtttaaagcgaaaaaaaacTATTGATGCGAag
agtttgttttcttttacctGAAACTATGAAGTAGTGTATTTATCGATTTC
AGCTgatgaaattcaacaaagtttcaGAGACAGAATGGGAAGAGAAGTCA
TTATTGAATGTTCAATTTTCTGATTTGATCGATGAAAAGCCTGGTGATAC
AAAAGATATCAGGATATGTAAGCTGTCTTGAAAATTGCTCTTGCTTTATC
TTGGTTCTAtgattgtgtttttcttttaCAGTTTATCTTTTGCTCCATTT
CGGTCCTATTCTCAtcatcacttttaaaaattttatccgGCTTCTTCACA
TCACTATCTAAACACTAAGATGATCTTTCTTCTCCAGATACACAACCACC
AACACTGAAAGAACTTTCTCGTCAAATCATTCTACAAAATGTCTTCACTT
TGACCGCACCCGAAGATGAAATCTCCTTCGCTCAACTAGATATTTTAGAT
GACTTACCATTACCTagaatattgataaaatatttgcgATATTTTCGCGA
CGTCAACCAACCTAAgccagtttcattgaaaaagcATCGAACATTCTCCA
GCGATGAGGACTCTTTCAGTAGTGACGACggagatgatgatgatgatgaa
aatggaggcggtggtggtggtgggGGCGGTGGGAATAGAATACGATTTCG
TATCATTATAAGGTGAGCGGTGAAAAAATCCCGAATAAAAAGTTTGCTAC
TCTATTGACTGGTGTACTAACTAAGGTCACATTCTGACACGCACAAAATG
ATAACGAACTGCCCGGAATACGACTCGAATCTAGAAAAGGGTAGCCACTC
TTCATTTATCGTCGAACAGAAAATACTTGTATTTGAGTATATGTTAAAAT
TGACAGTTCCCGTCGAATATTGAATAGTCATCATTAAATTTGATGGGGCG
GGGGTTACATCTTAAGCTGATTATCATTGCttttttgttggtgttttgtt
tcgtttttAGGGTATCATTGAATACTATTTACTAATGCTTACATACTTTC
CCCCGTAATACAGGTGTTGAAGAAAAACACTGAGATACATGATAGTAATT
GTATCCTTTTAGTATTCAAACTAACTAATGTTAGCCATTTCTGCATCTAT
ATAAAATATCCAGTGCTCATATATTGAGGAAAAAGCATAGCAAGGTTTCC
ATTTACTTTATGATTCGAGGTATTTTAGTTTTGGGTTCTGATCCGATTTA
TTAGATTCCTCTTTCAGTaatgtttttgtaaaaatggtgttttgcatttt
acgcgaaatttttactgtaccaatttttttgaatttagaagAAATATGAG
TTATAGTTAGGTTCGAAATTCAGGAGATATACTGTGAAATGCAATGTAGG
GATTGGCTTTTCGACAATAGtgttatttgaaattttctttatgCATTGAC
AATGTACAtagtaattttatttttttagacagaaattcttatatttatat
attttcatgaaaagtaaatttttaacAGCCTGGGAATTCTTATAAGAGTC
ATTACATTACAAGGTTCACCCTTACTCAAGTAAATGTACATATTTGCTGT
TTACCTAACTTAAGTTATCAGATAgggaacttttaaaatattttttcatg
tgtTACAATTTGCTAATTCATATGCTAAAATATGACCTTATCCCTTACGC
TAATTACCAATTTTAAGAATCCCACAGTAATGCGTGAAATTGTAAATTGT
TTGACTCTTTTCAGTGAAAgcccaaaaaactgttttttgtatttataatt
ttttctttaaaaaaataaccgATCTAAAGTAGATCAACCCCTGTAAATAG
ATTTGACAAATCTTATAATTTATTATTTCTATGTTACATAAAATCTTGTT
TTGGACTAAACACCATGTGCATAGATTAATTTTCATTCTCTTCTTTTTCC
AGAAGAATTACATGTATCAATCGAAATTAAATATCcataattcattattt
ttgcaGAAGGGTGCGACAGGGAAGCCTCTGTATCATAGGTTGTGTCTTAA
CACTGTTGAAGTATTGTTCGAAAAATACGACCAACCATATTTGTTCGATG
TCTGCAacagaagaattgaaaaatctcgactttattttttcttgatatCA
ACAATTTCAATATTCAGACTGTTGATTATTCTCTTTATGAACGGTTGAAA
GTTGTTGTTGTGGTCTTGGATGTTAGTTCTTCGGTGATGATGGTCATGGT
ATTCATCATCATGGTGAGGATATCGGACTTGAAACATCGGAAGTTCTCTT
TGTGGTGGTGCGAATAAAGGTGTGTGGTATGACTGGTGCAGAGGTGTAGG
GAAAGTGTGCTCATGCTCGTAATACAAATCATTATCATGGTGGTCATCGT
TGCCATGGTGAGATCCATGAAAACTTCCATGGTCAGTTGTCTGATGGTAA
TGATCATGTGCTGGATGGTCCAATTCATGGTGTTCGTATTGGTGAGGATT
GTGATGTGGTACGTATCTGTTgtgaagaaaaacaaatcaatcCC

Coding sequence (CDS) from alignment at sc0000073_pilon:572304..575897+

>MSTRG.10502.1.p1 ID=MSTRG.10502.1.p1|Name=MSTRG.10502.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4116bp|location=Sequence derived from alignment at sc0000073_pilon:572304..575897+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAGGTGTTGTACCGAAAGGCAAAAATAATGATGAACTAGTTGATAA
TTTGATTGAAGCGAAATATTTATCTGATCCACGAATATGTAGGATCTTCA
GGCAAGTTGATCGAGGAGATTTTTACCCTGGTGAATATTATGAAGATGCT
TATCGAGATCAAGCCATGAAATCTGGTAACCTTCATCTGAGTGCTCCTTG
TATTTATTGTTCTGTTATGGAAAACATGGACTTGTATCCAGGTCTGTCCT
TTTTGAATATTGGAAGTGGTACAGGCTATCTTTCAACAATGGTAGGCCAA
GTGTTAGGACCATTTGACACGAATCATGGCATTGAACTTTTTGAAGATGC
TATAAACTATTCGCAATCAAACATCGAACGTTTTATGAAATACAGTGATG
GTTTTCAAGTGACACATTTTTGTAAACCTCGTATCGTGCAAGGAAATGTA
CATTCTTTCGACATCACTTTTCGTCAGTACGACCGTGTGTACGTTGGTGC
AAGACTGATGCATTTACATATGAAGGAGAAAATCAAAGAGTTGGTCAAAG
TTGGTGGTGTTCTTATCTTCCCAACTGGTGAAAATCTgatgaaattcaac
aaagtttcaGAGACAGAATGGGAAGAGAAGTCATTATTGAATGTTCAATT
TTCTGATTTGATCGATGAAAAGCCTGGTGATACAAAAGATATCAGGATAT
ATACACAACCACCAACACTGAAAGAACTTTCTCGTCAAATCATTCTACAA
AATGTCTTCACTTTGACCGCACCCGAAGATGAAATCTCCTTCGCTCAACT
AGATATTTTAGATGACTTACCATTACCTagaatattgataaaatatttgc
gATATTTTCGCGACGTCAACCAACCTAAgccagtttcattgaaaaagcAT
CGAACATTCTCCAGCGATGAGGACTCTTTCAGTAGTGACGACggagatga
tgatgatgatgaaaatggaggcggtggtggtggtgggGGCGGTGGGAATA
GAATACGATTTCGTATCATTATAAGGTGAATGGGAGGTGTTGTACCGAAA
GGCAAAAATAATGATGAACTAGTTGATAATTTGATTGAAGCGAAATATTT
ATCTGATCCACGAATATGTAGGATCTTCAGGCAAGTTGATCGAGGAGATT
TTTACCCTGGTGAATATTATGAAGATGCTTATCGAGATCAAGCCATGAAA
TCTGGTAACCTTCATCTGAGTGCTCCTTGTATTTATTGTTCTGTTATGGA
AAACATGGACTTGTATCCAGGTCTGTCCTTTTTGAATATTGGAAGTGGTA
CAGGCTATCTTTCAACAATGGTAGGCCAAGTGTTAGGACCATTTGACACG
AATCATGGCATTGAACTTTTTGAAGATGCTATAAACTATTCGCAATCAAA
CATCGAACGTTTTATGAAATACAGTGATGGTTTTCAAGTGACACATTTTT
GTAAACCTCGTATCGTGCAAGGAAATGTACATTCTTTCGACATCACTTTT
CGTCAGTACGACCGTGTGTACGTTGGTGCAAGACTGATGCATTTACATAT
GAAGGAGAAAATCAAAGAGTTGGTCAAAGTTGGTGGTGTTCTTATCTTCC
CAACTGGTGAAAATCTgatgaaattcaacaaagtttcaGAGACAGAATGG
GAAGAGAAGTCATTATTGAATGTTCAATTTTCTGATTTGATCGATGAAAA
GCCTGGTGATACAAAAGATATCAGGATATATACACAACCACCAACACTGA
AAGAACTTTCTCGTCAAATCATTCTACAAAATGTCTTCACTTTGACCGCA
CCCGAAGATGAAATCTCCTTCGCTCAACTAGATATTTTAGATGACTTACC
ATTACCTagaatattgataaaatatttgcgATATTTTCGCGACGTCAACC
AACCTAAgccagtttcattgaaaaagcATCGAACATTCTCCAGCGATGAG
GACTCTTTCAGTAGTGACGACggagatgatgatgatgatgaaaatggagg
cggtggtggtggtgggGGCGGTGGGAATAGAATACGATTTCGTATCATTA
TAAGGTGAATGGGAGGTGTTGTACCGAAAGGCAAAAATAATGATGAACTA
GTTGATAATTTGATTGAAGCGAAATATTTATCTGATCCACGAATATGTAG
GATCTTCAGGCAAGTTGATCGAGGAGATTTTTACCCTGGTGAATATTATG
AAGATGCTTATCGAGATCAAGCCATGAAATCTGGTAACCTTCATCTGAGT
GCTCCTTGTATTTATTGTTCTGTTATGGAAAACATGGACTTGTATCCAGG
TCTGTCCTTTTTGAATATTGGAAGTGGTACAGGCTATCTTTCAACAATGG
TAGGCCAAGTGTTAGGACCATTTGACACGAATCATGGCATTGAACTTTTT
GAAGATGCTATAAACTATTCGCAATCAAACATCGAACGTTTTATGAAATA
CAGTGATGGTTTTCAAGTGACACATTTTTGTAAACCTCGTATCGTGCAAG
GAAATGTACATTCTTTCGACATCACTTTTCGTCAGTACGACCGTGTGTAC
GTTGGTGCAAGACTGATGCATTTACATATGAAGGAGAAAATCAAAGAGTT
GGTCAAAGTTGGTGGTGTTCTTATCTTCCCAACTGGTGAAAATCTgatga
aattcaacaaagtttcaGAGACAGAATGGGAAGAGAAGTCATTATTGAAT
GTTCAATTTTCTGATTTGATCGATGAAAAGCCTGGTGATACAAAAGATAT
CAGGATATATACACAACCACCAACACTGAAAGAACTTTCTCGTCAAATCA
TTCTACAAAATGTCTTCACTTTGACCGCACCCGAAGATGAAATCTCCTTC
GCTCAACTAGATATTTTAGATGACTTACCATTACCTagaatattgataaa
atatttgcgATATTTTCGCGACGTCAACCAACCTAAgccagtttcattga
aaaagcATCGAACATTCTCCAGCGATGAGGACTCTTTCAGTAGTGACGAC
ggagatgatgatgatgatgaaaatggaggcggtggtggtggtgggGGCGG
TGGGAATAGAATACGATTTCGTATCATTATAAGGTGAATGGGAGGTGTTG
TACCGAAAGGCAAAAATAATGATGAACTAGTTGATAATTTGATTGAAGCG
AAATATTTATCTGATCCACGAATATGTAGGATCTTCAGGCAAGTTGATCG
AGGAGATTTTTACCCTGGTGAATATTATGAAGATGCTTATCGAGATCAAG
CCATGAAATCTGGTAACCTTCATCTGAGTGCTCCTTGTATTTATTGTTCT
GTTATGGAAAACATGGACTTGTATCCAGGTCTGTCCTTTTTGAATATTGG
AAGTGGTACAGGCTATCTTTCAACAATGGTAGGCCAAGTGTTAGGACCAT
TTGACACGAATCATGGCATTGAACTTTTTGAAGATGCTATAAACTATTCG
CAATCAAACATCGAACGTTTTATGAAATACAGTGATGGTTTTCAAGTGAC
ACATTTTTGTAAACCTCGTATCGTGCAAGGAAATGTACATTCTTTCGACA
TCACTTTTCGTCAGTACGACCGTGTGTACGTTGGTGCAAGACTGATGCAT
TTACATATGAAGGAGAAAATCAAAGAGTTGGTCAAAGTTGGTGGTGTTCT
TATCTTCCCAACTGGTGAAAATCTgatgaaattcaacaaagtttcaGAGA
CAGAATGGGAAGAGAAGTCATTATTGAATGTTCAATTTTCTGATTTGATC
GATGAAAAGCCTGGTGATACAAAAGATATCAGGATATATACACAACCACC
AACACTGAAAGAACTTTCTCGTCAAATCATTCTACAAAATGTCTTCACTT
TGACCGCACCCGAAGATGAAATCTCCTTCGCTCAACTAGATATTTTAGAT
GACTTACCATTACCTagaatattgataaaatatttgcgATATTTTCGCGA
CGTCAACCAACCTAAgccagtttcattgaaaaagcATCGAACATTCTCCA
GCGATGAGGACTCTTTCAGTAGTGACGACggagatgatgatgatgatgaa
aatggaggcggtggtggtggtgggGGCGGTGGGAATAGAATACGATTTCG
TATCATTATAAGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10502MSTRG.10502Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10502.1.p1MSTRG.10502.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10502.1.p1.exon1MSTRG.10502.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10502.1.p1.exon2MSTRG.10502.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10502.1.p1.exon3MSTRG.10502.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10502.1.p1.exon4MSTRG.10502.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073_pilongenomesc0000073_pilon:572304..575897 +