MSTRG.10444.1.p1 (mRNA) -

Overview
NameMSTRG.10444.1.p1
Unique NameMSTRG.10444.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000072_pilon:1213359..1217474-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10444.1.p1 ID=MSTRG.10444.1.p1|Name=MSTRG.10444.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4116bp|location=Sequence derived from alignment at sc0000072_pilon:1213359..1217474- (Clytia hemisphaerica_ch_hm2_pilon)
TCATCAAATATTGAAAAAGTTTGATATCAAATAAGTGGAACACTAGAGTC
CTTTTATCCTATAGGTGTGAGAAAGGGGCAAAAAAGGTAATATTCATTGA
AACGTATTGTTGCAAACAAAGTTTCACAAAGAAATCAAAGTGTTCCATTT
CCTCAAACAATGAATAAATATTCAAAATTCATGAACATCGAAATTTGACT
TTCTTTTATTTGAGCTCATTTTTAAGTTAGAGGCCTTCCAGAGAACATCT
CATAAGATATGGTAAGACAATTTCGAGCTATAATAATCTAGGAATTTTCT
AAGAATTTGAAGTTTCACGGCTACTATTTCACCACTTTTGATTTTTTTCA
GTTAATTCTTATTTAGAACAAAGAGAGTTTTTAGTATCACTTGTTTTTTA
AAACAGTGACCGAGCAACGATTTCATGAGATGATAAGATTTTTCTACTTT
TCAGTTTTCTATCATTTTTGTGGCAATTGTTTTGGTCGTCGCACCAGCTC
AATCGAAGGTATGTTTAAAATCAACTTTTCTCACCTTTTTTTCGACCCAT
CAACACGCTTCAATGTAGCAAAGAAACTTCTCTTTCCTACTTTACTCTCT
CTCTAACTTTCCTTTTTTACAGAAGTTTTATCTTGTACCACATGAACAAC
TTCGCTACGACACAACACTCTGCTCTGAGGATTGGGAAAATTTTAACATA
ATTTTGATATATTGACCTGCTACTTAGAACTTTAGTGTGCGGTCGACAAA
GCGCTATCGGAATATCAGATAAACTCAGCTCCAAAGATGTATTATGCCAA
GGGATAGAAAGTCTGTCCTCGCTCGTATGAGTACATCAGGTCCTAGAAAG
TCTATACAGCAGTCAAAAATAAAAGAAGCATTTACTGTGCTAAACCTAAA
TCGAGCTCTATCTCTGCCTCCATGTGTTTTGTTGCTGGGAACGTTTTGAG
AAGGTTTTCATCTTTCTTCTTGGTACGAACGAATCAAGTGGTGCTTCCCG
TAGCTGCATCAGAAAAATATCAAGATATTCTTGATATGCGTATACTCTTA
GGTGCCAAATAAACGGGGGGGGGGGTTGGAAAAATTTTTCAAATCAAATA
AACGGGGGGGGACCTAATTACCGGGGGTTTGGAAAATGGACTTTAGAAAA
TTTAGGCTTTTTAGAGTAAAACAAGAAACTTTCCTTTTTGGAGCTGGGAA
TTTTTTCAATAATTAATAAACGGGGGGTCCTAATAACGTCCGGGGGGGGG
GTTGGAAAAAAATCGAAAAATTAACAAGCAGGGGGGCCGTTTATTTGGCA
CCTAAGAGTATGTCATATGTAATTTTCCCATCGGAAACACCCGAAAACAC
CAGAATTTGAGTGTTACTAAAACTAGCAACACAGGGGTCAAATTCCAGTT
TTTTCGGGTGTTTCCGTTATAAAAATGACGTAATCTTGACTTTTACATAT
CAAGAATTTTTGTTTTAGAAATGCAATTTGAAGATAGAAGAGAAAGGATC
TCTACCATTTGTGGAATCCATTGAGATCAAGGATACCAAATATGGAAAAG
CTGTCATCACAGAGGTCCCTTCACACCGAAACGGTGAGCTTCTCTCTTCT
CTTTTGCTTATTTTTTTTTCTATGGCGAAATTTCTTTCAGTAGTATTGCA
AGCGTGTGTTGGAAGGCTTTCCAGCAGGGAAAATCTTTTGTAGACCAAAG
CCATCCAGATCGCATTTTCCTGGCCAATATCCCCAAATCTGTAGGTTTTC
TGTGTAGCCGACGTACAACCTCGTTCCCTGCGTATTATCAGCTTTTTTCT
GCTTATTGATAGCGCTAGATATTCTCTGGCGTCAATAAGTATAACGTAAA
TAAAGCCTGGAATACACGGGGACGAGGTTGACCGACGTATTTTATTTTTG
AGTACTTTATTCTGATAGCATCTTACCACGAAGATTCTATTGACCCGTTA
TAAATTGTTCCTAAGAGGCTATAGGAGGAGAGTTTTGTTGAGGTGACTGT
GTATTATATTTTAAATTCTTAATCTTCCATATTTTCCAGGTGAATTGAAA
GCCGTCAAACACATTGTTTACGACAAAATGGGATTGGAGATCGACCTTCT
CAAAGAATTTGGACCGAAGAAAGTTTCTGTATGTTTGGTCCATCATCGAA
CCATGGACGAACCTTCTGAAAAAGACATCGAATCTGCTCTCAACGTAAGC
TACCTGTCAGTGCCACAGTGCCGCGGGAGGGGAATTTTTTCATAAATCTC
AATTAAATCTCACAAATTGCTGATTTCTTATTCTATTTCCTCCAATTAAT
TCCATTTCGAGTGTTTATTAACAGAAGCTCTTCTTGTTCATTTTCTAAAA
TTTATTTGTATACGTTTCGGAGAACAGAGAACCATCCACAAATAAATTTT
AGAAAAATTAACAAGAAGCTTCTTTTAATATACACTTTCTTACTAAAGAT
GTATCAAAGGATTGACTTGTTTAGTCAATTAATTTCTGCATTACTTTGAA
ACTTAATTGATGAGAAGTTGATTGAACGTTCACTCAGATTATAAAGAACG
GAACCCTGGCGCCCCTTTTCTCTGAGAAATTTTAAGCTATTAAGGCTTGG
GGGCACGAGAAGTTTCTTTCGCGTTGGCGCAATGCAACATGCTCCACCCC
ACCAATACAAGAAGAAAATGCGTGTCTTATGGTTTCTTTTTTTGTTTCAT
TTCTCAATTCCTTTATATTTCGTCTCTTTCTCAGCTTGGCGGTTGCGGTA
ACAAACTTCCCAGACGCGGATCACGTAGCGATTATTATTACCTTCCACGA
CACTGCAACGGAGTGCTGAATGAAGAACAAATGAAGATCGCAAAGGAGGA
GTGCGATGACGTCACAATGGTTTGTGGAGCGGACGTGGAGGAGAATGTTG
AGACACACAGCAAACGAGCTCTCGAACTCGCCATCGGTGAGTACACGTTT
TTTTATAAGAGCAAACTATATAAGAAAATAAGGCTTCGATGGCCAAAATG
TTAAGAACAAGTTAAGAATATTTTAAGGCTTCGTGAATTTTTAGAACAAT
AGGTAAAAATGGTCACAAAACGGTGAAATTAAGAACATGCTAAGAACATT
TTTAAGCTTAAAACCCAAAAAGTTAAGAGCATGCGAAGGCTTCATAAATT
TATTTGGATGTTCTTTAAAAAAAACGGTTATGCTTATGGTCTCTGTTTGC
TAGCAAGTAGTCTGCTACGAGCAGACGAATCAAACAAATTTAAAGTTGCC
CATTTTAAGGCGAAAAAGCTTTTTACAAAACTCCTGAGATTCTTCAGTGT
TTTTTTATATGACTAAAATTGTTGCAGAAATAACATTTTAAGGTGTAACA
AAAATCAGTGGTATTGAAAAGTCTTTGACCCCTCATGTTGTTGTTTAATC
GCGTAGAACCTCTGCCAAAGCCCTTTCTTACCGATAAATGAATTCCCCGG
CTACTCTCAGGTTCCAAATAAACGGGGGAGTGGTTTGAAAGTTTTCGAGA
TTTTAATAAACGGGGAGGACCTAATTGCCGGGGGGGATGGAAATTTTACT
TCTGAAAACCCAAAAGGCCCCTTATTTTTCTCTAAGGTCCGGGGAGGAGG
GGTTGGCAAATTTTCGAAAAATTAGCAAGCAGAGTGCCCGTTTATTTGAA
ACCTAAGAGTAACTTCTTCCGTGCAGAATCAAAATCATCTTCTCTTTCCT
ACTCAGACCATATGCAAGACGAAAGCAAGAGAGCCGTTCTCCGTGAATTC
ACAGCCTGTGATCCACAATCTACCATGGCTTTGATGTCGTGTCAACCATC
CCGGCTAGTTGCTGATTGTCATTTCACCACCAAGTTTTGTACATATGGTT
TGAAATGCCCACTCAATGTGCATGGAGGCTATTGGAATTGTAATTATAAC
CACAAGTTCGCCCAAGTCAAATGCTGTGATTACAAATGTAGATAAATTTA
ACAGAAATGATGTCTTTATGTAGTTTAAAAAAACTTTGCGAAAGAAAAAA
CAACATTGACGAATGATCTGAATGATGTTGCTAATTACTACTAATTTATT
TAACTTACGATTTCTGAAAAACACTACTGTACTGCTTGGGACCTCTGTAA
CTTTTGATTCTTTAAA

Coding sequence (CDS) from alignment at sc0000072_pilon:1213359..1217474-

>MSTRG.10444.1.p1 ID=MSTRG.10444.1.p1|Name=MSTRG.10444.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4608bp|location=Sequence derived from alignment at sc0000072_pilon:1213359..1217474- (Clytia hemisphaerica_ch_hm2_pilon)
ACCATATGCAAGACGAAAGCAAGAGAGCCGTTCTCCGTGAATTCACAGCC
TGTGATCCACAATCTACCATGGCTTTGATGTCGTGTCAACCATCCCGGCT
AGTTGCTGATTGTCATTTCACCACCAAGTTTTGTACATATGGTTTGAAAT
GCCCACTCAATGTGCATGGAGGCTATTGGAATTGTAATTATAACCACAAG
TTCGCCCAAGTCAAATGCTGTGATTACAAATGTAGATAACTTGGCGGTTG
CGGTAACAAACTTCCCAGACGCGGATCACGTAGCGATTATTATTACCTTC
CACGACACTGCAACGGAGTGCTGAATGAAGAACAAATGAAGATCGCAAAG
GAGGAGTGCGATGACGTCACAATGGTTTGTGGAGCGGACGTGGAGGAGAA
TGTTGAGACACACAGCAAACGAGCTCTCGAACTCGCCATCGGTGAATTGA
AAGCCGTCAAACACATTGTTTACGACAAAATGGGATTGGAGATCGACCTT
CTCAAAGAATTTGGACCGAAGAAAGTTTCTGTATGTTTGGTCCATCATCG
AACCATGGACGAACCTTCTGAAAAAGACATCGAATCTGCTCTCAACAAAT
GCAATTTGAAGATAGAAGAGAAAGGATCTCTACCATTTGTGGAATCCATT
GAGATCAAGGATACCAAATATGGAAAAGCTGTCATCACAGAGGTCCCTTC
ACACCGAAACGTTTTCTATCATTTTTGTGGCAATTGTTTTGGTCGTCGCA
CCAGCTCAATCGAAGATGACCATATGCAAGACGAAAGCAAGAGAGCCGTT
CTCCGTGAATTCACAGCCTGTGATCCACAATCTACCATGGCTTTGATGTC
GTGTCAACCATCCCGGCTAGTTGCTGATTGTCATTTCACCACCAAGTTTT
GTACATATGGTTTGAAATGCCCACTCAATGTGCATGGAGGCTATTGGAAT
TGTAATTATAACCACAAGTTCGCCCAAGTCAAATGCTGTGATTACAAATG
TAGATAACTTGGCGGTTGCGGTAACAAACTTCCCAGACGCGGATCACGTA
GCGATTATTATTACCTTCCACGACACTGCAACGGAGTGCTGAATGAAGAA
CAAATGAAGATCGCAAAGGAGGAGTGCGATGACGTCACAATGGTTTGTGG
AGCGGACGTGGAGGAGAATGTTGAGACACACAGCAAACGAGCTCTCGAAC
TCGCCATCGGTGAATTGAAAGCCGTCAAACACATTGTTTACGACAAAATG
GGATTGGAGATCGACCTTCTCAAAGAATTTGGACCGAAGAAAGTTTCTGT
ATGTTTGGTCCATCATCGAACCATGGACGAACCTTCTGAAAAAGACATCG
AATCTGCTCTCAACAAATGCAATTTGAAGATAGAAGAGAAAGGATCTCTA
CCATTTGTGGAATCCATTGAGATCAAGGATACCAAATATGGAAAAGCTGT
CATCACAGAGGTCCCTTCACACCGAAACGTTTTCTATCATTTTTGTGGCA
ATTGTTTTGGTCGTCGCACCAGCTCAATCGAAGATGACCATATGCAAGAC
GAAAGCAAGAGAGCCGTTCTCCGTGAATTCACAGCCTGTGATCCACAATC
TACCATGGCTTTGATGTCGTGTCAACCATCCCGGCTAGTTGCTGATTGTC
ATTTCACCACCAAGTTTTGTACATATGGTTTGAAATGCCCACTCAATGTG
CATGGAGGCTATTGGAATTGTAATTATAACCACAAGTTCGCCCAAGTCAA
ATGCTGTGATTACAAATGTAGATAACTTGGCGGTTGCGGTAACAAACTTC
CCAGACGCGGATCACGTAGCGATTATTATTACCTTCCACGACACTGCAAC
GGAGTGCTGAATGAAGAACAAATGAAGATCGCAAAGGAGGAGTGCGATGA
CGTCACAATGGTTTGTGGAGCGGACGTGGAGGAGAATGTTGAGACACACA
GCAAACGAGCTCTCGAACTCGCCATCGGTGAATTGAAAGCCGTCAAACAC
ATTGTTTACGACAAAATGGGATTGGAGATCGACCTTCTCAAAGAATTTGG
ACCGAAGAAAGTTTCTGTATGTTTGGTCCATCATCGAACCATGGACGAAC
CTTCTGAAAAAGACATCGAATCTGCTCTCAACAAATGCAATTTGAAGATA
GAAGAGAAAGGATCTCTACCATTTGTGGAATCCATTGAGATCAAGGATAC
CAAATATGGAAAAGCTGTCATCACAGAGGTCCCTTCACACCGAAACGTTT
TCTATCATTTTTGTGGCAATTGTTTTGGTCGTCGCACCAGCTCAATCGAA
GATGACCATATGCAAGACGAAAGCAAGAGAGCCGTTCTCCGTGAATTCAC
AGCCTGTGATCCACAATCTACCATGGCTTTGATGTCGTGTCAACCATCCC
GGCTAGTTGCTGATTGTCATTTCACCACCAAGTTTTGTACATATGGTTTG
AAATGCCCACTCAATGTGCATGGAGGCTATTGGAATTGTAATTATAACCA
CAAGTTCGCCCAAGTCAAATGCTGTGATTACAAATGTAGATAACTTGGCG
GTTGCGGTAACAAACTTCCCAGACGCGGATCACGTAGCGATTATTATTAC
CTTCCACGACACTGCAACGGAGTGCTGAATGAAGAACAAATGAAGATCGC
AAAGGAGGAGTGCGATGACGTCACAATGGTTTGTGGAGCGGACGTGGAGG
AGAATGTTGAGACACACAGCAAACGAGCTCTCGAACTCGCCATCGGTGAA
TTGAAAGCCGTCAAACACATTGTTTACGACAAAATGGGATTGGAGATCGA
CCTTCTCAAAGAATTTGGACCGAAGAAAGTTTCTGTATGTTTGGTCCATC
ATCGAACCATGGACGAACCTTCTGAAAAAGACATCGAATCTGCTCTCAAC
AAATGCAATTTGAAGATAGAAGAGAAAGGATCTCTACCATTTGTGGAATC
CATTGAGATCAAGGATACCAAATATGGAAAAGCTGTCATCACAGAGGTCC
CTTCACACCGAAACGTTTTCTATCATTTTTGTGGCAATTGTTTTGGTCGT
CGCACCAGCTCAATCGAAGATGACCATATGCAAGACGAAAGCAAGAGAGC
CGTTCTCCGTGAATTCACAGCCTGTGATCCACAATCTACCATGGCTTTGA
TGTCGTGTCAACCATCCCGGCTAGTTGCTGATTGTCATTTCACCACCAAG
TTTTGTACATATGGTTTGAAATGCCCACTCAATGTGCATGGAGGCTATTG
GAATTGTAATTATAACCACAAGTTCGCCCAAGTCAAATGCTGTGATTACA
AATGTAGATAACTTGGCGGTTGCGGTAACAAACTTCCCAGACGCGGATCA
CGTAGCGATTATTATTACCTTCCACGACACTGCAACGGAGTGCTGAATGA
AGAACAAATGAAGATCGCAAAGGAGGAGTGCGATGACGTCACAATGGTTT
GTGGAGCGGACGTGGAGGAGAATGTTGAGACACACAGCAAACGAGCTCTC
GAACTCGCCATCGGTGAATTGAAAGCCGTCAAACACATTGTTTACGACAA
AATGGGATTGGAGATCGACCTTCTCAAAGAATTTGGACCGAAGAAAGTTT
CTGTATGTTTGGTCCATCATCGAACCATGGACGAACCTTCTGAAAAAGAC
ATCGAATCTGCTCTCAACAAATGCAATTTGAAGATAGAAGAGAAAGGATC
TCTACCATTTGTGGAATCCATTGAGATCAAGGATACCAAATATGGAAAAG
CTGTCATCACAGAGGTCCCTTCACACCGAAACGTTTTCTATCATTTTTGT
GGCAATTGTTTTGGTCGTCGCACCAGCTCAATCGAAGATGACCATATGCA
AGACGAAAGCAAGAGAGCCGTTCTCCGTGAATTCACAGCCTGTGATCCAC
AATCTACCATGGCTTTGATGTCGTGTCAACCATCCCGGCTAGTTGCTGAT
TGTCATTTCACCACCAAGTTTTGTACATATGGTTTGAAATGCCCACTCAA
TGTGCATGGAGGCTATTGGAATTGTAATTATAACCACAAGTTCGCCCAAG
TCAAATGCTGTGATTACAAATGTAGATAACTTGGCGGTTGCGGTAACAAA
CTTCCCAGACGCGGATCACGTAGCGATTATTATTACCTTCCACGACACTG
CAACGGAGTGCTGAATGAAGAACAAATGAAGATCGCAAAGGAGGAGTGCG
ATGACGTCACAATGGTTTGTGGAGCGGACGTGGAGGAGAATGTTGAGACA
CACAGCAAACGAGCTCTCGAACTCGCCATCGGTGAATTGAAAGCCGTCAA
ACACATTGTTTACGACAAAATGGGATTGGAGATCGACCTTCTCAAAGAAT
TTGGACCGAAGAAAGTTTCTGTATGTTTGGTCCATCATCGAACCATGGAC
GAACCTTCTGAAAAAGACATCGAATCTGCTCTCAACAAATGCAATTTGAA
GATAGAAGAGAAAGGATCTCTACCATTTGTGGAATCCATTGAGATCAAGG
ATACCAAATATGGAAAAGCTGTCATCACAGAGGTCCCTTCACACCGAAAC
GTTTTCTATCATTTTTGTGGCAATTGTTTTGGTCGTCGCACCAGCTCAAT
CGAAGATG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10444MSTRG.10444Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10444.1.p1MSTRG.10444.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10444.1.p1.exon6MSTRG.10444.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10444.1.p1.exon5MSTRG.10444.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10444.1.p1.exon4MSTRG.10444.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10444.1.p1.exon3MSTRG.10444.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10444.1.p1.exon2MSTRG.10444.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10444.1.p1.exon1MSTRG.10444.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072_pilongenomesc0000072_pilon:1213359..1217474 -