MSTRG.10419.1.p1 (mRNA) -

Overview
NameMSTRG.10419.1.p1
Unique NameMSTRG.10419.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000072_pilon:810704..816878+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10419.1.p1 ID=MSTRG.10419.1.p1|Name=MSTRG.10419.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6175bp|location=Sequence derived from alignment at sc0000072_pilon:810704..816878+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAcattggaaaaattaaaatttagaaGTGGGTTGTGTTGTCTGGATGTT
GAGTCAGCACTTTGAGCAGTTATGACATGACTATAACCGTGTTTGTTCTG
TAATTCTGCCTACTTCATAACCAAATATTACTCCAACAATACAAGGTCAC
ATCCATAAAAAGTATGATGTAAAGGTATAAACACATTTCTTGTTTCTTGC
ATTTTGattttagtatagtaagatagtCTATTGGTGTTGTCAACAGTCTG
TCCCTGTGACAAGGTACCCTTtgacaaacaaaaataaaccagctgtgctg
gaagctccggcttaagagattaaaagatgtgaaagatgagcttgttgagt
tagttgtgttagaacgttgcccacaaactgctaatcagaacagatcagga
agcaaagaaaaagttctattgcagagcgagtatgagaaataatcttaacg
aataaataaaccagctggaagtttagctctttaAAGTGATTACACATATa
tactttcttgcctaaagaaccaaccccaccccccgcCAACTCATCCttga
ctaaaaagttcaaaattggagctaaatgagataaacatttagaagtcagt
caatatttccaagttcatgatttgattgtccagataaaatttcggggaga
aaaatagccaaattagaggccacaggcttttagctaagcattattttttc
tgttgggataatacttgggggagagtaggataaaccaaataaaatggtac
aatagtgtgtatatgtaataaatagtggtatgtttggaaaaaacctgttt
cgggtttgaaaaatcttcaaaatgaaCGGTCGCCcaaaccaatgaaatta
cgacaaagtccaaagaatatcattttcagttataacactgtgaaaatttc
tccgatcttgttcaaatttacacaggaattgtgttttagtatcctttact
gaattctcatagtgatatgtttgtgaaaaatctgtgccgggtttgaaaaa
tcaaaaggaagggtcgccagccgcgatgaaattaccgtcaactgctccaa
cttgggactatcttacgcaacatgggaggGCCATTCCACCaacatttcac
cgaacctcaaaagtcattagatttgagtttaatgaaccgcgtattaaaaa
atacacgatttctctttcgattttacagtaagtgaaaatacagaccagat
atcaacaagtcccatgttgcgtacactcgtcccaagttggagcagttgac
ggtacgatacaaagttcaaaaacgatcattttcagccataatactgtgaa
aatttctcctatcttgtttaaatttacacaggaattgtgttttagtatcc
tttactgaattctcagagtgatatgtttgtgaaaaatctgtgccgggttt
gaaaaatcaaaaggaacggtcgccagccgtgatgaaattacgacaaagtc
caaaaacaatcattttcagccataatactgtgaaaatttctcctatcttg
ttcaaatttacacaggaattgtgttttagtatcctttactgaattctcat
agtgatatgtttgtgaaaaatctgtgccgggtttgaaaaatcaaaaggaa
gggtcgccagccgcgatgaacttaccgtcaactgctccaacttgggacta
tcttacgcaacatgggaggGCCATTCCACCaacatttcaccgaacctcaa
aagtcattatatttgagtttaatgaaccgcgtattaaaaaatacacgatt
tctcttttgattttacagtaagtgaaaatacagaccagatatcaacaagt
cccatgttgcgtacacttgttccaagttggagcagttgacggtacgatac
aaagttcaaaaacgatcattttcagccataatactgtgaaaatttctcct
atcttgttcaaatttacacaggaattgtgttttagtatccgttattgaat
tctcatagtgatatgtttgtaaaatatctgtgtcgggtttgaaaaatcaa
aaggaacggtcgccagccgtgATGAAATtgcgacaaagtccaaaaacgat
cattttcagccattatACTGTGAAATcttttccaatcttgttcaaattta
cacaggaattgtgttttaatatcctttattgaattctcatagcgatatgt
ttgtaaaatatctgtgtcaggtttgaaaaatcaaaaggaacggtcgccag
ccgtgatgaaattacgacaaagtccaaaaacgatcattttcagccataat
actgtgaaattttttccaatcttgttcaaatttacacaggaattgtgttt
tagtatcctttattgaattctcatagcgatatgtttgtaaaatatctgtg
tcaggtttgaaaaatcaaaagaaacggTCGCcaagtcaaaaaatgatgaa
tacaaaacagcatcattttcagccatacacataacaccacaaaaactgct
cagatcgtttttaaatttgcactgtaatgttgtaattttagtattctctt
tcgaattccaatggatgtgtgtttgaaagtttcattccattgtcaagtta
cagagtcttatggttttgtgcgtccataaaactagagaagttagccatat
gtAAGATTTTAAGCACTCGAGCAGCTTACGATTCaaggccaaaatttctc
caaagtctttccacattgttatagaccagtatgcatcaaacttctcataa
atcatgtccaaaacatctagcctagttaactacaaaacatcatgaataat
gatgaaaatgatatctttcactgagatttgcagtaagcccactttcggca
gccatcttatactttcgcaatattatcgaaatccagataatccgtttttg
ttaaatcggaatagatcatcggattagataaacaaaaaaaaatgtcttga
ccttgAACGTCGttgttgtcggaagagagaattaaaggctcctaggccgg
agcaacaAGAACCTGACACCTGAAATAGCTAAATACAACCTGATGGTTTG
GGGGAGAATGATGGTCATGGAGAAGGGTTTGATTGTAGACTCAAGACTTC
TCCTTACCTCTCCTTCTTCTAGCTTTTAAGATGTGGTTATAAACAAGGTT
TTGAAGATTTCTGATTATAATTTTCCATAGAGGGGCTTTTTCATACATTT
TTCTAGAATTACACAATCATTGAAGGATTCAGGGGTCATGTCATTATCTG
AAATCCAGGTGACAGTCTTTTCGGAGAACGCCACGCTCTTTTGAATAACT
GACAATTCCAGCATACATTTTTATAGTATGATAATGTCatataattgatt
tgtcttttacaacacagctgttaccagttaccgtcaactgctctaacttg
ggactatctgacaaacagcaattcagccaccatttcaccaaacctccaaa
gtcagaaagtcatttgatttgagttaatgaaggacgtattaaaaaataca
tgatttctctttcgcaccgagtaggctttaaatcgaaatatgaaaaaaat
cccatAGTGGAACACATGCAAATGTCTGGAAAAAAGAAGACCAAGttagt
ggcaaaacaatggagcgtttgacgtcactcgcgtggCAAGTTAAATACTc
atatttgttaatcccatcaggcgatAAAGCGGTTAGGCAGTGGGCATTCT
Cttattctccaatcggcgtctggtcattttgaataaaaaaaaagttaaaa
agggcgcgctatctatcagtgaaagttatcgtgacatgttatgacagaaa
gtatgattgattaACTTGGTGGCTAGgtagcaaaacaaacttgttgtcaa
agagatttaacagtaagtgaaaatacagaccagaatatcaacagtcccat
gttttgaccaatcgtcccaagttagagcagttgacggtacctagagacaa
gatgatttagagtaatttgttattcagaCTATCGCGTTCTCCTAAACAAC
TATTGCATTCATCAGAGGGaaaaaaaGATTATAATAGTTTCTTGGGAGAC
CACAACGGTCTATTGCATAACTTATTACTCCACACTTCAGTGGATACAAT
GGGATAAGTAAAGGAAGCGAGAAATTAGATATGACCTATGaataagtttt
gttcaaattggcatgttcaggctgcatcatttgaggcatgcgatagcacg
cgcacacctccacacacacctaaaatgtctgaggagtgcgatcaatcaca
ccccataaagtaagtttcacaactgaaagttgtgcatagcactccttatc
acacgcctaaattactaaaattaaggttttaggagtgtgattgaccacac
gcctgaaattttcaaatgatgcagcctgcaTGTTAGCATTCTCCCGAATT
TGCATGCGATATCACTGCAAATCTTCTCGTACTGCGTCCTATAAAGTATT
AGCTGAGGTAGTAGGGTTATATTTCCATAAATTGGAGCAGATGATTTCCA
GCTCAAAGTGTTTGAGTAATTAATATGGGGAACTGAGTCAATAGGTCGTT
GCattctcccaaacgactataAAAAGAATAGCAGATTTGACCATTATTTT
ATTGCCTTTTCGTGATTTATGCAATAGACCTTTCCTGTAATTCCTTAAAA
GCAAGTACTCTTTTTCTTTCCTTGACTTATCATGATTTCAAACCATTTGA
AAAATACCTCTCTAGTTTAGTATGGCAAAGACTTCATCACGTCCTAACAG
TACTTATGATGACGGTGAAGTTATTGGATTGCCAGTGAAGTTTGGCAGCG
GTAGATGGAAAAATACTAAACAAGTGTCAGGAACAAGATTCAAAATATGT
TTATGTGGAAAAAGCAAAGTTGGAAAGACATCAATCTTTATGAGACTTCA
GGGATTGGATTTTGCAGAAGATGATCCAAACTGTcccatttcaaattttg
aattcaaagatGAGAATGATAGTACAGTAGAGGTAAGATTTTGGAAATGA
tcagagaaaaaatatataacattgAAGCCAGTAGACTTGAACTACAAAGc
gcttatttcttttttaattgttgggaaaatattcttattagAACATAATC
TCGTATCTTATGTCAATATTTCTTGTAGCCTCTTATTCACAAATCAAGCT
TTTTCATTATTGTATCTTTCCGTTTCAGTATTCTATATCAGATCCGGAAT
CTATAGACATAGACTCGCTGACATTTGGGGACCATTACCGAAATGCACAC
TGTGTTGTATTAATATATGATGTCACTGACTTTAGTTCTTTGGATTATTT
GAGCTATGAAatggagaaaattgaaaaaaataactataCTCCATATGCTA
AATATGTTTTATTGCGAAATAAAATTGAtaagaaatcatcaaaacatatt
CCTTTAGctaagcaaaaagaattttttgcaaaCAGTAAATTGCGCTTAAA
GATTGATCATGTAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAG
AATTCTTCAAAGAAGAACTGCCAGAATTACTAGTACTCCcgtcatcagaa
agcaaagttaaGGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCT
AGATGCAACTGACTCTTCCCCTGGTGgcagaaaaaagaagaagaagaaaa
ggatcaaTTGTGCAACATCATAAGAATTTCATAAAGATTTACTTCAGAAA
AAGCTTCCAGAATTTTGTTTACAGAAGCAGGGGTTTTGCTTTGTGTTTTG
CATGGATGGCAAATGACAAGGTAAACTCTGGGAGAGTTTAAAGAATAATG
CAGTAGTAtttttagtttgttttatatttttgctttttgaaaGCACAGGA
TAATAAGTTATGTTTTAACTCTTTAATATTATTAGCTCTATAAGACAGGC
TATTTGATGAGAGCACTCTACAAAATGACTTTATTGACTTTCCATAGCTT
GTGAATGTGATGACTCAGTTAAAATTTTAGTTATAATATCCTTTTAAGAG
TTATCTATCTTTATTATTTATGAAATTCACATacagtatttttgtttatt
tataatCATTTTATTACGTGTCATGCAGTGCTCTACCTTATTTTTAACAG
AACGGTAATCTCTTGAGAGGAAttgataaaaataagatttttcactttgt
tttagTCATCTTTGATTTACTTAATTAGTTATACATCATTTGATGATGAT
TTTGTGTTATTGCGTTCTAGTTGCC

Coding sequence (CDS) from alignment at sc0000072_pilon:810704..816878+

>MSTRG.10419.1.p1 ID=MSTRG.10419.1.p1|Name=MSTRG.10419.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000072_pilon:810704..816878+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACGGTGAAGT
TATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACTAAAC
AAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAAAGTT
GGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAGAAGA
TGATCCAAACTGTcccatttcaaattttgaattcaaagatGAGAATGATA
GTACAGTAGAGTATTCTATATCAGATCCGGAATCTATAGACATAGACTCG
CTGACATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATTAATATA
TGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAatggaga
aaattgaaaaaaataactataCTCCATATGCTAAATATGTTTTATTGCGA
AATAAAATTGAtaagaaatcatcaaaacatattCCTTTAGctaagcaaaa
agaattttttgcaaaCAGTAAATTGCGCTTAAAGATTGATCATGTAGTTG
AAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGAA
CTGCCAGAATTACTAGTACTCCcgtcatcagaaagcaaagttaaGGCCTT
TGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCTT
CCCCTGGTGgcagaaaaaagaagaagaagaaaaggatcaaTTGTGCAACA
TCATAAATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACGG
TGAAGTTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATA
CTAAACAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGC
AAAGTTGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGC
AGAAGATGATCCAAACTGTcccatttcaaattttgaattcaaagatGAGA
ATGATAGTACAGTAGAGTATTCTATATCAGATCCGGAATCTATAGACATA
GACTCGCTGACATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATT
AATATATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAa
tggagaaaattgaaaaaaataactataCTCCATATGCTAAATATGTTTTA
TTGCGAAATAAAATTGAtaagaaatcatcaaaacatattCCTTTAGctaa
gcaaaaagaattttttgcaaaCAGTAAATTGCGCTTAAAGATTGATCATG
TAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAA
GAAGAACTGCCAGAATTACTAGTACTCCcgtcatcagaaagcaaagttaa
GGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTG
ACTCTTCCCCTGGTGgcagaaaaaagaagaagaagaaaaggatcaaTTGT
GCAACATCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10419MSTRG.10419Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10419.1.p1MSTRG.10419.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10419.1.p1.exon1MSTRG.10419.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10419.1.p1.exon2MSTRG.10419.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10419.1.p1.exon3MSTRG.10419.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072_pilongenomesc0000072_pilon:810704..816878 +