MSTRG.10413.1.p1 (mRNA) -

Overview
NameMSTRG.10413.1.p1
Unique NameMSTRG.10413.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000072_pilon:732929..736319+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10413.1.p1 ID=MSTRG.10413.1.p1|Name=MSTRG.10413.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3391bp|location=Sequence derived from alignment at sc0000072_pilon:732929..736319+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTACAAGCAGCTGATTCTATTAAATAATAAAGAGTGTCACATGACTAAA
CAATGGAGCAAGCCGATGCTGATTGGCTCAAAAAGCGTCACTCCACTTCA
TGGATATGCATTGTGTATGCATTTGCTATTGGAATGGAATATTCGTGCAT
TTCGACATCTCTCTTATATTATCTGAAAGAAGatttaaaattggaaaatc
CTAAACTATGGTATAGTGTTATTATGTCATTATCAGCTGCGTCAGCATCG
ATTAATGCCGTCATTAGCGGTAAACTATTTGATAAGACCAGAAGATTGAA
AttatttatgttaatttttaCAATGGTTACTTTAGTTGGTAATCTCTTGT
ATACGTTACAAATTTCAGTTTGGTTTTTGGCTGTTGGTAGATTTTTATGT
GGTTTATGTGATGCTGCTCAACCTGTTATTTCTGGTAAGCTCTTCATTCT
TATACTCATTtttcatagtgtgcagaggggtccagcctACAACATTTTTC
aagggaggggggctaaggaaaatagcccccggctaaattctagaaacata
gccttcaccttcacaaagcagaatatcaaagaaattttgcataaaaatcc
tcaataaatttttgcgtgacagacaaaaactttttcaagaGGGTTAAAAC
CTTCCAaacagcatagatttttaacataatttaaaatttaacgTAACCTA
TAATGTTACCTATCATCTCTGCCCCTAGCTCTATTACACAAcacttattt
ttgaaaaatacagcccccaatcaagcaaaaatggtttagtcccccccccc
taagctcagggggggTGCATTATGCTATGTTTTAGATACGTAAAACTGTT
TAAAAACAACTGACCCAAGAACGTTAAACTAATATATTAAGTGGGTTAGT
TTACGCGAAGATTATATTGCACGAGTTTCGCAGCTTTTttacgaaaaatc
gcgaaatttaatgctCTCGAAAATTTGGAaaccagaattttttttacaaa
aaggcGAGTTTTTGTGCtccttttaaaatgaaagaatgtaGTTGAAAAAG
GGGCAGATTCGAAAATAAGTCCCACGAAAATATCTGctctaaaatttatc
cacttgaGATAGCTAATTAAGCCTCGTcacttcatattttttttacgaaa
ttttcaggctttgattattttaataatcgtcagccgtgcaaaattactcg
aatctgattggtttagaggagtgcgattaatcgttaattgcactattacc
actttttgcactcttcggcgGgggaacacttttgtccccttattcttttt
tctcccaagtcctgtgtcagagacttttttttactatataataaaaaaca
aagacattttttttcttcaataCaaaaaagaacaaagaaattttacgtta
caatagcttcttttaattgaaaacaaagaaaaattacactgcaatgtaac
gtaacaaaggagaaaataccgtaatttgcacgagtccgaaggactcgtgc
aaattactattttctcctttgttactcgtgattaatcgttaattgcactc
caaaccatacgattactagtacgaATCATCCAAAAacttttgagatattt
tactataaaaaatatttttggtttgagGCTCTGGATTAACTTTGATTCag
aaaagttagaaattttCTGTATCGGGATCACTTTTTATGAGTAGAAAGAA
ATAggggagaaaaatagcaaaTCATATAATCTTGGTTCGAAACTTTTAAA
CACAAACTTTATAAGATGGTCGAAAATTCTTGAAGCCTTTGGTCTTAATT
TTACCAATTTGtcagtatttttgtgcaatccCCCAAGAAGCTGGGCGGTG
TAGAGTACAATGAAGTGTAAGCCCGAAGGGACTACCAAAGTtcatcctac
caaagttgcgtggCCTATCGCGCCCCGCCCAGTTTTTGCACAAATGctag
attgaaactaaaattttcagctagatttcgaaaaaaatatcactcgaaaa
caaaggaatcgctagattcaatctgtcgtcaaaaatacggcgcatatttt
aaggcttcactttttcttgcctgagaaaggttagagattcacttctagcc
attcaggcttatacttcattggtagAGTTCATAATAAAcccttaatattt
tgaccattttgacaatattatgttcttatatagttcttataaaaaacgtg
tgtgTTCTATTCTCTTTTTCAGGTGAATTTTCAAGACTATTCAAAGGACA
AGAgctgacaaaaaaattgtcgCAGTATCAAGCTTTATACGCCGTTGGTT
TCGTTATGGGACCAGCATGTCCTGTATTATTTGGTAAAATTAATATTCAA
ATAACAGAATGGTTGGTTTTAAACCAGAAtaattttgttagtattttcaT
GGCACTTGTTATGTTGGGCATGATTCCTGCCATAACTGTTGGCGTTCACG
ACTTAGGCAAAAAGGAAGATATTTGCAACAGAGAGCCTGAACATAGCATG
AATAACTTCACTGCCAAGGACATTGTAATGAATTTTGACTTAATATTATT
GATTATCAGCTCAGCATTAGTCAATGCAATAGCCTCTATAGTAGAGCTCA
ACATCAACTTAATGGCTAGTGATTGGTATCAATGGTCATTAGATCGACTC
AGTATCACAACTTTTGTATGTGTTTTTGTCTACATAGTCTTCATGCTTAC
TGTGGCTTATAAAATCATTGACACTCATCTTAAACTCATATTTCTGTTAG
TGTTCTTGCTACATGCAATGTGTGTTTTAATTTTAATGCTACCTAAACTG
TACCCGATATATAATATTTACTGGCAGGAAATACAGATGGTTGTTAGCAT
ATTATTGAACTCTGTCACTGGATTGACTATTGCAGTTTTAGCAAGAGCTC
TGTTATTTCAAATGGTACCGCCTGATCATGCTAGCTTCTCGGATGGTTTC
CGGAGCACAGTGACACGTGTGTTTTCTGTACTGGCCTTTTTCGCAGCTTC
ATGGATTTACGAGAACACTATATATGTTTCACCCGTTATTGCTTTTGTTA
TGATCTCAACCTTCTTTATTCTTGTAAGTCGAAGAATATATCGTCCATGT
ACgtgataattcatgatatgcaccattgtgcaatgtcttccacggaccta
acagctgattggttgaaagtgacgtattgactgattttacgtcacttaca
accaatcagccattgtgtccgtgatgtaatgtcagaagatattgcacaat
ggtgcatatcattgTGGTATCATTGACATGCACGAGGGCTGttttaaagt
agaaaatatttagaattttatGTATCTATCTCCTCTAGTCTATATCACAG
ATCGCAATAGATATACATTCTTTATAGGTCAGCTTATTACC

Coding sequence (CDS) from alignment at sc0000072_pilon:732929..736319+

>MSTRG.10413.1.p1 ID=MSTRG.10413.1.p1|Name=MSTRG.10413.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2532bp|location=Sequence derived from alignment at sc0000072_pilon:732929..736319+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGCAAGCCGATGCTGATTGGCTCAAAAAGCGTCACTCCACTTCATG
GATATGCATTGTGTATGCATTTGCTATTGGAATGGAATATTCGTGCATTT
CGACATCTCTCTTATATTATCTGAAAGAAGatttaaaattggaaaatcCT
AAACTATGGTATAGTGTTATTATGTCATTATCAGCTGCGTCAGCATCGAT
TAATGCCGTCATTAGCGGTAAACTATTTGATAAGACCAGAAGATTGAAAt
tatttatgttaatttttaCAATGGTTACTTTAGTTGGTAATCTCTTGTAT
ACGTTACAAATTTCAGTTTGGTTTTTGGCTGTTGGTAGATTTTTATGTGG
TTTATGTGATGCTGCTCAACCTGTTATTTCTGGTGAATTTTCAAGACTAT
TCAAAGGACAAGAgctgacaaaaaaattgtcgCAGTATCAAGCTTTATAC
GCCGTTGGTTTCGTTATGGGACCAGCATGTCCTGTATTATTTGGTAAAAT
TAATATTCAAATAACAGAATGGTTGGTTTTAAACCAGAAtaattttgtta
gtattttcaTGGCACTTGTTATGTTGGGCATGATTCCTGCCATAACTGTT
GGCGTTCACGACTTAGGCAAAAAGGAAGATATTTGCAACAGAGAGCCTGA
ACATAGCATGAATAACTTCACTGCCAAGGACATTGTAATGAATTTTGACT
TAATATTATTGATTATCAGCTCAGCATTAGTCAATGCAATAGCCTCTATA
GTAGAGCTCAACATCAACTTAATGGCTAGTGATTGGTATCAATGGTCATT
AGATCGACTCAGTATCACAACTTTTGTATGTGTTTTTGTCTACATAGTCT
TCATGCTTACTGTGGCTTATAAAATCATTGACACTCATCTTAAACTCATA
TTTCTGTTAGTGTTCTTGCTACATGCAATGTGTGTTTTAATTTTAATGCT
ACCTAAACTGTACCCGATATATAATATTTACTGGCAGGAAATACAGATGG
TTGTTAGCATATTATTGAACTCTGTCACTGGATTGACTATTGCAGTTTTA
GCAAGAGCTCTGTTATTTCAAATGGTACCGCCTGATCATGCTAGCTTCTC
GGATGGTTTCCGGAGCACAGTGACACGTGTGTTTTCTGTACTGGCCTTTT
TCGCAGCTTCATGGATTTACGAGAACACTATATATGTTTCACCCGTTATT
GCTTTTGTTATGATCTCAACCTTCTTTATTCTTGTAAGTCGAAGAATATA
TCGTCCATGTACgtgaATGGAGCAAGCCGATGCTGATTGGCTCAAAAAGC
GTCACTCCACTTCATGGATATGCATTGTGTATGCATTTGCTATTGGAATG
GAATATTCGTGCATTTCGACATCTCTCTTATATTATCTGAAAGAAGattt
aaaattggaaaatcCTAAACTATGGTATAGTGTTATTATGTCATTATCAG
CTGCGTCAGCATCGATTAATGCCGTCATTAGCGGTAAACTATTTGATAAG
ACCAGAAGATTGAAAttatttatgttaatttttaCAATGGTTACTTTAGT
TGGTAATCTCTTGTATACGTTACAAATTTCAGTTTGGTTTTTGGCTGTTG
GTAGATTTTTATGTGGTTTATGTGATGCTGCTCAACCTGTTATTTCTGGT
GAATTTTCAAGACTATTCAAAGGACAAGAgctgacaaaaaaattgtcgCA
GTATCAAGCTTTATACGCCGTTGGTTTCGTTATGGGACCAGCATGTCCTG
TATTATTTGGTAAAATTAATATTCAAATAACAGAATGGTTGGTTTTAAAC
CAGAAtaattttgttagtattttcaTGGCACTTGTTATGTTGGGCATGAT
TCCTGCCATAACTGTTGGCGTTCACGACTTAGGCAAAAAGGAAGATATTT
GCAACAGAGAGCCTGAACATAGCATGAATAACTTCACTGCCAAGGACATT
GTAATGAATTTTGACTTAATATTATTGATTATCAGCTCAGCATTAGTCAA
TGCAATAGCCTCTATAGTAGAGCTCAACATCAACTTAATGGCTAGTGATT
GGTATCAATGGTCATTAGATCGACTCAGTATCACAACTTTTGTATGTGTT
TTTGTCTACATAGTCTTCATGCTTACTGTGGCTTATAAAATCATTGACAC
TCATCTTAAACTCATATTTCTGTTAGTGTTCTTGCTACATGCAATGTGTG
TTTTAATTTTAATGCTACCTAAACTGTACCCGATATATAATATTTACTGG
CAGGAAATACAGATGGTTGTTAGCATATTATTGAACTCTGTCACTGGATT
GACTATTGCAGTTTTAGCAAGAGCTCTGTTATTTCAAATGGTACCGCCTG
ATCATGCTAGCTTCTCGGATGGTTTCCGGAGCACAGTGACACGTGTGTTT
TCTGTACTGGCCTTTTTCGCAGCTTCATGGATTTACGAGAACACTATATA
TGTTTCACCCGTTATTGCTTTTGTTATGATCTCAACCTTCTTTATTCTTG
TAAGTCGAAGAATATATCGTCCATGTACgtga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10413MSTRG.10413Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10413.1.p1.exon1MSTRG.10413.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10413.1.p1.exon2MSTRG.10413.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10413.1.p1MSTRG.10413.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072_pilongenomesc0000072_pilon:732929..736319 +