MSTRG.10286.1.p1 (mRNA) -

Overview
NameMSTRG.10286.1.p1
Unique NameMSTRG.10286.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000071_pilon:598877..601091+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10286.1.p1 ID=MSTRG.10286.1.p1|Name=MSTRG.10286.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2215bp|location=Sequence derived from alignment at sc0000071_pilon:598877..601091+ (Clytia hemisphaerica_ch_hm2_pilon)
GTATATTATCATTGACAAAACATTACCGATGTAATCGAGATGCTGTGATA
CAAGCAATCTCATTCACATTGACACGGCTCTTGAGCGTAATGCACCACGA
AACGCTTGCAGGTATAGAAATACTATCCCCTTTTCAATTGCCACTAATCT
CAATCAAAACTCCATTAGTAGAGGTCACTATttgtcatcaaaatttgcct
tgtctgggggtaatttggtgtgtccggggggccaaaagtcaccctgtccg
ggggtaaatcactaaaaattgttatatcctccacccccatgtaaattttt
tttctggaagagcccattgacTTCTTTATATCTATGATTTAGATAATTAT
GACTGAGAGTAGTACTTACACATTTTTTAGCTGAATCAAAGTATGCTGTA
CTTGCAACTGGGGATAAGTCTGTTGGGAAGTCTTCCATTCAAAAATTGGT
AGCTCATGGCCAAGGAATACCTTCAACCAGCCATCCTTTTGCTGCTGCTG
GTGGTGATGGCAGTGGTGCTGGAACAACTTTGTAAGTTTGtctctttaaa
atcttttaagcaGGGAATAAAGTTATTTACTTTGAGAAGGTATTGTAGGT
AACTTTTtagtactttgaaatttttgcgcaATTACACAGACGCCTGAAAA
TTCCTAACCTACATCTTGGGGACCATGAATAAAGCTTTCtgttttcaaat
ataaaatgcACCATCAGactgatgattttttatttcttttacttAAGGAC
AAAACAATTACAAATATTAGCTTTGTCTAATATGGTCATTATATTCAATG
AGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAAACCAAGCTCAC
GACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACTTAAACCGAAAGC
ATCTCTGCTCGCCTCGTCAAATCAACTGATACCACACATAAAGTAATTat
ctaatttaattttaattaaatACGTTCTCGAACAGTCTTGACTACTTTAA
TACagtcattttacatttttttacatttttccatTCACTAGAGGGATTCA
ATATTCTCAACTTTAGTTGAGTTAGAATATTGTGTGTATGTATGTAACTG
TGTCTGTCAGTCCCCTCAAAGCTTTGGGGCAAGCCGaagacttctttttt
ttttcatttttagggtgGTCACAAGTTTTAGCCCGAAACGAGGTTAAAAA
CTTTGGGCCAGGCTGGAGACATAATTATCTAATATGATTTTCATATTGCT
AAAGTTTTCTACGTTTGATCCTTGGGTGTGGATTCAAATTAGCTTGGCTT
ACATGgattttacaattgggcctacgaatgactTTAAAGATACTGAAATT
GTGTCAGTGCGGTTAGCAAGTTAAAGAGTAGAATAAGTCATTGGTCAATT
TTCTTTAGGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGGA
AGACTTCGACAAAGTCGTAGACAAAAGGGCTTTGGATAATGATTTGACAA
AATTGGTTGAATCAAATCCTGTaagtaattgttttttttgttttcgaagG
CTTTTACTTAATTCTATTAGAATCACATTGAAAACAGAGTTTATAGAAAA
GAATGAGAGTATTGGTGATttactcttttgaaaatcatAGGTGAAAaatt
ataccttaagggaagaaatttttgcgggaatttaattttgcggttgatca
aattattttttttcgcgggaatttaatttcgcggctCAGCAATTTTCGAC
aaattcgcgggaatttaatttcgcggttgcaggatatttttggccaaaag
cgttattaaataagcaaaaaacctattttaaggcttgaaatagtacGAAT
TTGGGGAATGCgttaaataaattaaatttcgcgggaatttaattttgcgg
attggcaattttgtaaaatttcgcgggaacttaatttcgcggttttaggc
aaaatccgcgaaaaaccgcgaaaatttcttcccttaaggtaatggTTCAC
AGTGCTCAAGCGGTGTGTTTAATGACAACCTGTGACATGGCAacaccaaa
aaatatttcatgtttCATTCTCTTGATTTTAGGGATTTCTCATCGCCTGG
TGTACCTGGCACAATGATATGGTTTGTAAAGCGATGGAAAGATTTGCAGA
CAAAGTTGCCAATGAAATTATCAGTTCACGCAACGACATTAAATCTCGCT
TGTTGGACGCCAAGC

Coding sequence (CDS) from alignment at sc0000071_pilon:598877..601091+

>MSTRG.10286.1.p1 ID=MSTRG.10286.1.p1|Name=MSTRG.10286.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3495bp|location=Sequence derived from alignment at sc0000071_pilon:598877..601091+ (Clytia hemisphaerica_ch_hm2_pilon)
ATATTATCATTGACAAAACATTACCGATGTAATCGAGATGCTGTGATACA
AGCAATCTCATTCACATTGACACGGCTCTTGAGCGTAATGCACCACGAAA
CGCTTGCAGCTGAATCAAAGTATGCTGTACTTGCAACTGGGGATAAGTCT
GTTGGGAAGTCTTCCATTCAAAAATTGGTAGCTCATGGCCAAGGAATACC
TTCAACCAGCCATCCTTTTGCTGCTGCTGGTGGTGATGGCAGTGGTGCTG
GAACAACTTTGACAAAACAATTACAAATATTAGCTTTGTCTAATATGGTC
ATTATATTCAATGAGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATT
AAACCAAGCTCACGACAACTATGGGTGTCATTCAGTTGGTCGTGGAACAC
TTAAACCGAAAGCATCTCTGCTCGCCTCGTCAAATCAACTGATACCACAC
ATAAAGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGA
CTTCGACAAAGTCGTAGACAAAAGGGCTTTGGATAATGATTTGACAAAAT
TGGTTGAATCAAATCCTGGATTTCTCATCGCCTGGTGTACCTGGCACAAT
GATATGGTTTGTAAAGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGA
AATTATCAGTTCACGCAACGACATTAAATCTCGCTTGTTGGACGCCAAGA
TATTATCATTGACAAAACATTACCGATGTAATCGAGATGCTGTGATACAA
GCAATCTCATTCACATTGACACGGCTCTTGAGCGTAATGCACCACGAAAC
GCTTGCAGCTGAATCAAAGTATGCTGTACTTGCAACTGGGGATAAGTCTG
TTGGGAAGTCTTCCATTCAAAAATTGGTAGCTCATGGCCAAGGAATACCT
TCAACCAGCCATCCTTTTGCTGCTGCTGGTGGTGATGGCAGTGGTGCTGG
AACAACTTTGACAAAACAATTACAAATATTAGCTTTGTCTAATATGGTCA
TTATATTCAATGAGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTA
AACCAAGCTCACGACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACT
TAAACCGAAAGCATCTCTGCTCGCCTCGTCAAATCAACTGATACCACACA
TAAAGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGAC
TTCGACAAAGTCGTAGACAAAAGGGCTTTGGATAATGATTTGACAAAATT
GGTTGAATCAAATCCTGGATTTCTCATCGCCTGGTGTACCTGGCACAATG
ATATGGTTTGTAAAGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGAA
ATTATCAGTTCACGCAACGACATTAAATCTCGCTTGTTGGACGCCAAGAT
ATTATCATTGACAAAACATTACCGATGTAATCGAGATGCTGTGATACAAG
CAATCTCATTCACATTGACACGGCTCTTGAGCGTAATGCACCACGAAACG
CTTGCAGCTGAATCAAAGTATGCTGTACTTGCAACTGGGGATAAGTCTGT
TGGGAAGTCTTCCATTCAAAAATTGGTAGCTCATGGCCAAGGAATACCTT
CAACCAGCCATCCTTTTGCTGCTGCTGGTGGTGATGGCAGTGGTGCTGGA
ACAACTTTGACAAAACAATTACAAATATTAGCTTTGTCTAATATGGTCAT
TATATTCAATGAGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAA
ACCAAGCTCACGACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACTT
AAACCGAAAGCATCTCTGCTCGCCTCGTCAAATCAACTGATACCACACAT
AAAGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGACT
TCGACAAAGTCGTAGACAAAAGGGCTTTGGATAATGATTTGACAAAATTG
GTTGAATCAAATCCTGGATTTCTCATCGCCTGGTGTACCTGGCACAATGA
TATGGTTTGTAAAGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGAAA
TTATCAGTTCACGCAACGACATTAAATCTCGCTTGTTGGACGCCAAGATA
TTATCATTGACAAAACATTACCGATGTAATCGAGATGCTGTGATACAAGC
AATCTCATTCACATTGACACGGCTCTTGAGCGTAATGCACCACGAAACGC
TTGCAGCTGAATCAAAGTATGCTGTACTTGCAACTGGGGATAAGTCTGTT
GGGAAGTCTTCCATTCAAAAATTGGTAGCTCATGGCCAAGGAATACCTTC
AACCAGCCATCCTTTTGCTGCTGCTGGTGGTGATGGCAGTGGTGCTGGAA
CAACTTTGACAAAACAATTACAAATATTAGCTTTGTCTAATATGGTCATT
ATATTCAATGAGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAAA
CCAAGCTCACGACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACTTA
AACCGAAAGCATCTCTGCTCGCCTCGTCAAATCAACTGATACCACACATA
AAGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGACTT
CGACAAAGTCGTAGACAAAAGGGCTTTGGATAATGATTTGACAAAATTGG
TTGAATCAAATCCTGGATTTCTCATCGCCTGGTGTACCTGGCACAATGAT
ATGGTTTGTAAAGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGAAAT
TATCAGTTCACGCAACGACATTAAATCTCGCTTGTTGGACGCCAAGATAT
TATCATTGACAAAACATTACCGATGTAATCGAGATGCTGTGATACAAGCA
ATCTCATTCACATTGACACGGCTCTTGAGCGTAATGCACCACGAAACGCT
TGCAGCTGAATCAAAGTATGCTGTACTTGCAACTGGGGATAAGTCTGTTG
GGAAGTCTTCCATTCAAAAATTGGTAGCTCATGGCCAAGGAATACCTTCA
ACCAGCCATCCTTTTGCTGCTGCTGGTGGTGATGGCAGTGGTGCTGGAAC
AACTTTGACAAAACAATTACAAATATTAGCTTTGTCTAATATGGTCATTA
TATTCAATGAGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAAAC
CAAGCTCACGACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACTTAA
ACCGAAAGCATCTCTGCTCGCCTCGTCAAATCAACTGATACCACACATAA
AGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGACTTC
GACAAAGTCGTAGACAAAAGGGCTTTGGATAATGATTTGACAAAATTGGT
TGAATCAAATCCTGGATTTCTCATCGCCTGGTGTACCTGGCACAATGATA
TGGTTTGTAAAGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGAAATT
ATCAGTTCACGCAACGACATTAAATCTCGCTTGTTGGACGCCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10286MSTRG.10286Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10286.1.p1MSTRG.10286.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10286.1.p1.exon1MSTRG.10286.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10286.1.p1.exon2MSTRG.10286.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10286.1.p1.exon3MSTRG.10286.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10286.1.p1.exon4MSTRG.10286.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10286.1.p1.exon5MSTRG.10286.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000071_pilongenomesc0000071_pilon:598877..601091 +