MSTRG.10264.2.p1 (mRNA) -

Overview
NameMSTRG.10264.2.p1
Unique NameMSTRG.10264.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000071_pilon:262451..267703+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10264.2.p1 ID=MSTRG.10264.2.p1|Name=MSTRG.10264.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5253bp|location=Sequence derived from alignment at sc0000071_pilon:262451..267703+ (Clytia hemisphaerica_ch_hm2_pilon)
ACACAGGTTGTGATAATGGGAGTGAATCGCTTTTTTCTGGTCCTTCTCTT
AGGTAAGGCTTTATGAATCATTTTTCGGTCCCTTTCAGGACTAAAGTCGA
GTCTCTtcaattcgaacctctataactcgaatgtcttcttaacttGAACA
GGTTTTCTCCTCATCCTTACAGAtaactactttaggcgtagaaactttcg
cgagcagaaactttcgcgattttcgcgaattttggcccttttcgcgaaag
taaatgtctttaaaaattctaggaagggcaattcgcgaaagtttatgctc
gcgaaatactcttgacaaaatagaaaatctgttaaacttcaaactttgaa
taaaatgtagcttttatggcactttttagcctgctaaaatactaataagt
caaaagacaaatatttcaagccaatccaagaagtattcgaccctctaagc
cattttttcatgtgaaaattctcaattttacgtcttgattcgcgaaagtt
tatgctcgcgaaaaatatttttccgttaaattcgcgaaagtaaatgtcgt
gaatttcgcgatttttcgtcctcgcgaaagtttctgctcgcgaaagtttg
tacgcctaaagtatgccttataaacttttctcagtaactcaaaatttcct
taattcgaacaaatttgtgctacccgtgcgtgttcgagttatggagactc
cactgtatttaaAAATCGTTAATTTTTTGTCACGTAAAAGGAGTTTCAGA
AACTGTATTCGTATTTTCTTTTAGGGCATTGTAGTTTGGCAGTACCCTGG
GGAATCAAACTTCGAAATGGAAAAATCTACCCACGCCCAGGAAGAGGATT
GTACTCTACCGAACAAATTGGTAAGTTAAAGTGatactttttcacatttt
caaaacGAATGGCTAGTTTTAAGACCGATGATAAGCATTTAGTTTTCATC
GTCCAAAGTCGTAACATGCCATCAGCAACCCGTACCTTGCTATAATATTA
AATATTTAGGcgccgttggaaagatattctcgacgaaaataatctaaaat
attaTAGATTATTGATAAATTAGGTAGGAGAACGAAAATAAAAAGGGAAA
GTTTTTTCTACTGGTTAGAAACTAGCAAAAGCATTTCAGaatatttaaaa
ctttctgatttcaAATCTGTATTCAGTCTTTGCATAGGTCATTTTGGCCA
TATTTAGCCGCGAGCttgactttttttatcaatcatttttttAGAGAATG
GGAAAGGGCAAGAACTGGACATGCTTTTCAAAGATGGAATAAACCCATTC
AAAGCAAGTGGACCCAGAGCACGAAGAGCTGTTCTTGTTTTTGAGGGATT
GAAATGGCCAAATTCCATTGTTCCTTACAGATTCGCGGAGGAAAATCCAC
TTTGTAAGTTAAAAGATTGTCGATTGAGTCAATTGAGATCTAAGAAATAT
TCCACATAACATTGAAAACAAAGCACACGCTTTTTCTACAGTTAACGGAC
AACTGGATACTAACTAAAACTGCTTACCTAAAGTCTTTAGAATGATTTTC
AGTGTGGACAAAATTTCCCCAAAACTTAATATATATCTAACGGGCTACAC
TACACGATacattgtcaggcaatatattgatgatatattgctgagtgtcc
gcaatatattgaaaagttgtccgcaatatattgtcagctcgatttgcaat
tttccaacaatatagaacgattgtttacagaaagaaaatttgtttttatg
atAGAGtaaaatattgttcgtcaatatattgtgtagtcaaAGTAGCCCTT
AACGACTTATTTCTCAATCATCTGACAAATTGAGAAATGGGGTCCTCTTA
ACTCGAGTCTTAGGTTATTGAAAAGCAAAACCCGACAAAACAATTTAATC
TAAAAATGACTAATACATAATCAAACAGCTAACACGAGTATTTGTGGGCT
GCTGGCCCGATCCACTGTCGGATTTGTATTTCTtctatactacctgtggt
taTGTAGAGGTATGTGGTTCAGACACGAGTATTTGAAAGTGTTTGCTCTT
GTTTAGCTCCATCTTTACGAACAAAGACTTTGGAAGGAATGAAGAGAATT
GAAGAGACAACATGTGTTCGATTTGTCGAACAAACAACTGAAAACGATTA
CGTCATAATTGATGCAAAAGACAATGCGTAAGTGTTTGTACCACATGCAG
CACACAACGTCATAATGATGTTCATCTAACATTCATAATACCTTAAtaat
caaaaataatcaaaaagccTTGCTACAACAGATTCATCAGAACCACAAAC
ATCACGTTTTAGTTCTACTGTAGGACCTGCCATTTTCATTCGCAGTTTTA
CCAGATCCATCGATTTCACCAGCAAGCAAATGAACTAGAGAACTAATAAA
GCAATCAggtttttttcagattatttttgCTAAGGGGTGAACATTGGACT
TGGGAAATAATTTTGGGTTACCTTATTTTAGGAAATTCTCATTTTATGTT
TTCACATTGGACAATACACGTTCATGTCTTTCTCACTTATCGTCGAGGTA
AAGACACATCCTCGATTGAAAAGTATCTGATGCTTTGCTTGACTCTTTTT
TCAGGTGTTATTCATTCGTCGGGCGTATTGGCGGTGCACAACGCCTGAAC
ATGGGCGAAGGGTGCAACTCAGTAGCGATTGCGATACATGAGCTGATGCA
CGCTCTTTCTTTTGTACACGAACACAATCGAAATGATCGAGACAAATATG
TCATCGTTAAATTGGAAAACATTTTGTCGGGTAAgaaagtcaaatatttt
ttcagtaTTTCTATTGATATTGTACGCTGGAAATTGTTTTACAACCTTGG
TTTAtaaacccaatgcctaaccgcttgcGCTAACGAGACACGGGAAAGCT
GTCATTCAAAAATACTTATAGTGTGTAATTTCcagaccttaattaagaaa
gctcataaccctaccggtgcccttACAAGGATCCCTAAGTTAAGTATCAG
GGTAAgatatattgtgactctcgagctccaaccctaacccgaACTgttaa
taaccgaacccccgtctagttccatagattgaaaaatttcacttgcatct
tGGTGggtgatatcgtctgccaaccgcTGAAAATCGCCAGTTTACAAACT
AGGCAAGCATTGCTCTTTACTTTGGCATTATATAAATGCGTATTGACTAA
AGATAACTGGATTATGTTTCTCCTTCTTCAGGGGCGGAAAAGTCTTTTGA
GAAATACGAAGATTTTGAAATCGACATTTTGGAAACTCCTTTTGACAAGC
AAAGTGTGATGCACTATTCAAAGTGAGTGATTTGGCACGTGTGTAATTTG
GCTAAAAATTTGTACTGTTACGTTGTAAAAAGACGATTcattaatataat
ttttttgatcaaCAATAAACTACTTTCAGGGGGTCAGCACTGTGACGACA
AATCAAGAATCTATTTATAAGCACGTTCAATAAATACAATAGGATATGTG
CTTTCAATcttcgattctttgaaaagtaatACGATACTCGATAAAATTCC
GTCTCTATAGGTTAAGTTTTAGAGAAATATAAAATGTTCTCTCACGGTAT
CTGAATTTCCCGTAAATGGAGGATCTTGTAGAAACATTTATATTTTGTGG
TTGACCAATGTTCAAGGCCGTTATTGTAATAAACTGACAGCTCCTAGTCC
AAAAAGTCCTGCTCTTTCTGTATTTCGTTCAGTTCAAACCCAGGGGAAGG
Gtaaaaatgggtgccgggtatgtgcgagccgggtccctttttcacaccct
cgaaagtctctcaaaggagtacaaaaaccattaaaaagagaATTGAGTCT
CTGCAAGAGTCCAAAAATCTCTCGAAGGGTcgtgatttttccaaaatttg
gacaaaaatcgagtgaaaatcgataaaagatttgagaaaagtctctcATA
GGGTCCCAAAAACaccaattttttacaatgactttgttttcaattctttc
CAGCTTTGCATTCACCAATAAGAATCCTTTCGATGGCGAATCAGCAATGA
CTTTAATCAGTAAAGGACCATTGGGTGCAAATGAAGTTCTTGGGAATTCA
GAGGGGTTGAGTTCTCTTGATATACAGCGTATCAACACCAGGTATGTTTT
ACATTAAGCATGTTGTAAACtttttttAGCGTTGATTAGTAGTTGATGAT
TGAAATATCTTGAATTGTGCTCGACTTTGAACCATTGATGTACGTCTCAA
TTCGGTTCCTTTGGAAATAAATCCAACCTTGTAACTTCTCTTATAGATAC
TGTCAAGGTGCTACACCGCAAACTAAAACTCCAACAAAAACTCCACCAGC
GACTGAACAGCCGACAGAAAACCCTGAAACACCTGCCACCGAAGATCCAC
AAGTTACCACCAATCCTGTTACCAAAAATCCTGTGACTGAAAACCCCGTG
ACTGATGGCGTCACAATGGAGCCTTTGACTGAGACACCGGAGCCGTTGAC
CAAAACAGCCGCACCAACCGAAATTCCGCCTAAAACACCTTGTCCTACAA
AACGACCCAAAGAAAAGCGATTGAAAAAGAAAGGCTCGTGGTGGAAACGT
ATAACTCGTAAATGGTGGCAAGGGCGAGGGCGTGGCGGGCGTAAACGTGT
gcatcaaaaagtttcaagaaagGGCGGCTCAAGACGTGTAATCGGGCGTc
atgtcaagaatttttttaagaaagcaatatttggaaaataaattttgaga
agaAGATTGACTAATGTACGGCACCATTTTTAGTAAGAATTGCACCTTTT
TGCACTTTATATATGCACTTCCACAAGTGGCATATTCTTTCATATATTTA
AAAGATTGCAGTTTTTAGGAGTGTCAAAAACACTGCATTTACAAATGGAA
CCTTCTTCGCATTGTTGGAATCAGTCAAAAGTTCTTTTTCAGCATTTCTG
ATCTCCTACCTGATTTTTGAGCTATAAGTAATGAAATTAAACAAGCAGCC
TGTCGGCATTACGGCCCAGCTCTCTTTCGGTATCGTCGGGCATCTCGCAT
CTCTCCATCATTCCTGCAGATATCAATCagtacttttttttattttcaga
cccTACAGTTGATATGGATGATTATATGGATTTGAGATTCTTTGGGTCTT
GGATGCTTCGGCGAAATAACTACTTTGATTATAATCATACATGTGTTGAA
GCACTCGAAATATTTACCTCGCCTGCAGtctataacaatttttttctgtg
caA

Coding sequence (CDS) from alignment at sc0000071_pilon:262451..267703+

>MSTRG.10264.2.p1 ID=MSTRG.10264.2.p1|Name=MSTRG.10264.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3906bp|location=Sequence derived from alignment at sc0000071_pilon:262451..267703+ (Clytia hemisphaerica_ch_hm2_pilon)
ACACAGGTTGTGATAATGGGAGTGAATCGCTTTTTTCTGGTCCTTCTCTT
AGGGCATTGTAGTTTGGCAGTACCCTGGGGAATCAAACTTCGAAATGGAA
AAATCTACCCACGCCCAGGAAGAGGATTGTACTCTACCGAACAAATTGAG
AATGGGAAAGGGCAAGAACTGGACATGCTTTTCAAAGATGGAATAAACCC
ATTCAAAGCAAGTGGACCCAGAGCACGAAGAGCTGTTCTTGTTTTTGAGG
GATTGAAATGGCCAAATTCCATTGTTCCTTACAGATTCGCGGAGGAAAAT
CCACTTTCTCCATCTTTACGAACAAAGACTTTGGAAGGAATGAAGAGAAT
TGAAGAGACAACATGTGTTCGATTTGTCGAACAAACAACTGAAAACGATT
ACGTCATAATTGATGCAAAAGACAATGCGTGTTATTCATTCGTCGGGCGT
ATTGGCGGTGCACAACGCCTGAACATGGGCGAAGGGTGCAACTCAGTAGC
GATTGCGATACATGAGCTGATGCACGCTCTTTCTTTTGTACACGAACACA
ATCGAAATGATCGAGACAAATATGTCATCGTTAAATTGGAAAACATTTTG
TCGGCTTTGCATTCACCAATAAGAATCCTTTCGATGGCGAATCAGCAATG
AACACAGGTTGTGATAATGGGAGTGAATCGCTTTTTTCTGGTCCTTCTCT
TAGGGCATTGTAGTTTGGCAGTACCCTGGGGAATCAAACTTCGAAATGGA
AAAATCTACCCACGCCCAGGAAGAGGATTGTACTCTACCGAACAAATTGA
GAATGGGAAAGGGCAAGAACTGGACATGCTTTTCAAAGATGGAATAAACC
CATTCAAAGCAAGTGGACCCAGAGCACGAAGAGCTGTTCTTGTTTTTGAG
GGATTGAAATGGCCAAATTCCATTGTTCCTTACAGATTCGCGGAGGAAAA
TCCACTTTCTCCATCTTTACGAACAAAGACTTTGGAAGGAATGAAGAGAA
TTGAAGAGACAACATGTGTTCGATTTGTCGAACAAACAACTGAAAACGAT
TACGTCATAATTGATGCAAAAGACAATGCGTGTTATTCATTCGTCGGGCG
TATTGGCGGTGCACAACGCCTGAACATGGGCGAAGGGTGCAACTCAGTAG
CGATTGCGATACATGAGCTGATGCACGCTCTTTCTTTTGTACACGAACAC
AATCGAAATGATCGAGACAAATATGTCATCGTTAAATTGGAAAACATTTT
GTCGGCTTTGCATTCACCAATAAGAATCCTTTCGATGGCGAATCAGCAAT
GAACACAGGTTGTGATAATGGGAGTGAATCGCTTTTTTCTGGTCCTTCTC
TTAGGGCATTGTAGTTTGGCAGTACCCTGGGGAATCAAACTTCGAAATGG
AAAAATCTACCCACGCCCAGGAAGAGGATTGTACTCTACCGAACAAATTG
AGAATGGGAAAGGGCAAGAACTGGACATGCTTTTCAAAGATGGAATAAAC
CCATTCAAAGCAAGTGGACCCAGAGCACGAAGAGCTGTTCTTGTTTTTGA
GGGATTGAAATGGCCAAATTCCATTGTTCCTTACAGATTCGCGGAGGAAA
ATCCACTTTCTCCATCTTTACGAACAAAGACTTTGGAAGGAATGAAGAGA
ATTGAAGAGACAACATGTGTTCGATTTGTCGAACAAACAACTGAAAACGA
TTACGTCATAATTGATGCAAAAGACAATGCGTGTTATTCATTCGTCGGGC
GTATTGGCGGTGCACAACGCCTGAACATGGGCGAAGGGTGCAACTCAGTA
GCGATTGCGATACATGAGCTGATGCACGCTCTTTCTTTTGTACACGAACA
CAATCGAAATGATCGAGACAAATATGTCATCGTTAAATTGGAAAACATTT
TGTCGGCTTTGCATTCACCAATAAGAATCCTTTCGATGGCGAATCAGCAA
TGAACACAGGTTGTGATAATGGGAGTGAATCGCTTTTTTCTGGTCCTTCT
CTTAGGGCATTGTAGTTTGGCAGTACCCTGGGGAATCAAACTTCGAAATG
GAAAAATCTACCCACGCCCAGGAAGAGGATTGTACTCTACCGAACAAATT
GAGAATGGGAAAGGGCAAGAACTGGACATGCTTTTCAAAGATGGAATAAA
CCCATTCAAAGCAAGTGGACCCAGAGCACGAAGAGCTGTTCTTGTTTTTG
AGGGATTGAAATGGCCAAATTCCATTGTTCCTTACAGATTCGCGGAGGAA
AATCCACTTTCTCCATCTTTACGAACAAAGACTTTGGAAGGAATGAAGAG
AATTGAAGAGACAACATGTGTTCGATTTGTCGAACAAACAACTGAAAACG
ATTACGTCATAATTGATGCAAAAGACAATGCGTGTTATTCATTCGTCGGG
CGTATTGGCGGTGCACAACGCCTGAACATGGGCGAAGGGTGCAACTCAGT
AGCGATTGCGATACATGAGCTGATGCACGCTCTTTCTTTTGTACACGAAC
ACAATCGAAATGATCGAGACAAATATGTCATCGTTAAATTGGAAAACATT
TTGTCGGCTTTGCATTCACCAATAAGAATCCTTTCGATGGCGAATCAGCA
ATGAACACAGGTTGTGATAATGGGAGTGAATCGCTTTTTTCTGGTCCTTC
TCTTAGGGCATTGTAGTTTGGCAGTACCCTGGGGAATCAAACTTCGAAAT
GGAAAAATCTACCCACGCCCAGGAAGAGGATTGTACTCTACCGAACAAAT
TGAGAATGGGAAAGGGCAAGAACTGGACATGCTTTTCAAAGATGGAATAA
ACCCATTCAAAGCAAGTGGACCCAGAGCACGAAGAGCTGTTCTTGTTTTT
GAGGGATTGAAATGGCCAAATTCCATTGTTCCTTACAGATTCGCGGAGGA
AAATCCACTTTCTCCATCTTTACGAACAAAGACTTTGGAAGGAATGAAGA
GAATTGAAGAGACAACATGTGTTCGATTTGTCGAACAAACAACTGAAAAC
GATTACGTCATAATTGATGCAAAAGACAATGCGTGTTATTCATTCGTCGG
GCGTATTGGCGGTGCACAACGCCTGAACATGGGCGAAGGGTGCAACTCAG
TAGCGATTGCGATACATGAGCTGATGCACGCTCTTTCTTTTGTACACGAA
CACAATCGAAATGATCGAGACAAATATGTCATCGTTAAATTGGAAAACAT
TTTGTCGGCTTTGCATTCACCAATAAGAATCCTTTCGATGGCGAATCAGC
AATGAACACAGGTTGTGATAATGGGAGTGAATCGCTTTTTTCTGGTCCTT
CTCTTAGGGCATTGTAGTTTGGCAGTACCCTGGGGAATCAAACTTCGAAA
TGGAAAAATCTACCCACGCCCAGGAAGAGGATTGTACTCTACCGAACAAA
TTGAGAATGGGAAAGGGCAAGAACTGGACATGCTTTTCAAAGATGGAATA
AACCCATTCAAAGCAAGTGGACCCAGAGCACGAAGAGCTGTTCTTGTTTT
TGAGGGATTGAAATGGCCAAATTCCATTGTTCCTTACAGATTCGCGGAGG
AAAATCCACTTTCTCCATCTTTACGAACAAAGACTTTGGAAGGAATGAAG
AGAATTGAAGAGACAACATGTGTTCGATTTGTCGAACAAACAACTGAAAA
CGATTACGTCATAATTGATGCAAAAGACAATGCGTGTTATTCATTCGTCG
GGCGTATTGGCGGTGCACAACGCCTGAACATGGGCGAAGGGTGCAACTCA
GTAGCGATTGCGATACATGAGCTGATGCACGCTCTTTCTTTTGTACACGA
ACACAATCGAAATGATCGAGACAAATATGTCATCGTTAAATTGGAAAACA
TTTTGTCGGCTTTGCATTCACCAATAAGAATCCTTTCGATGGCGAATCAG
CAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10264MSTRG.10264Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10264.2.p1MSTRG.10264.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10264.2.p1.exon1MSTRG.10264.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10264.2.p1.exon2MSTRG.10264.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10264.2.p1.exon3MSTRG.10264.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10264.2.p1.exon4MSTRG.10264.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10264.2.p1.exon5MSTRG.10264.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10264.2.p1.exon6MSTRG.10264.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10264.2.p1.exon7MSTRG.10264.2.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000071_pilongenomesc0000071_pilon:262451..267703 +