MSTRG.10242.1.p1 (mRNA) -

Overview
NameMSTRG.10242.1.p1
Unique NameMSTRG.10242.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000070_pilon:1529320..1534456-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10242.1.p1 ID=MSTRG.10242.1.p1|Name=MSTRG.10242.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5137bp|location=Sequence derived from alignment at sc0000070_pilon:1529320..1534456- (Clytia hemisphaerica_ch_hm2_pilon)
TTTCAGAAATATAGAACAAAAATAAACATTCTTTCTAAATACCATGTAAA
TGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAAGTAAGTCA
TCTCAATTCGCTGGATCCAAATGGCTACCAAGGGTAACAAAGGTATCATT
CTTCGATCACAGTTGACTCTCTCTAATTCGATCTTCAAGGGACGAAGAAT
ATTATTCGGATTAGAGAAAGGTTCGAATTACAAAGAGTAGTTCACTTTCC
AGCTGAGGGGGCCAATATTTTGGTTCGAATTATAGAAAGATTCGAATAAT
AGAGGTTCGAATTAGAGAGAGTTGACTGTACTTAAGATCAGTGGTTTCGA
CATTCTTTACTAACCGCATAATGACTTTGGCAGACATTTCTGACGTCATT
TGTCTGCTCGCACTCCACCCCCTTCATATAGTTTTTGTGTAAATTTTGAT
AGGTACGATTATAGAAAGACAACATAGGAATAAAGCAAAGGGCCTAAATT
TAGTACCAATAAACCACTGAATAGTGGAGTAAGATTTGCCGCTCGCCACT
AAAATTGAGTTCGTTGCGTTATTCTCGTGTTGGCGCTCTATGGTAACCAC
AGATTTCACAGAAGTCCAAAGGGCTAGATAGAGTGCTTCAAACGCTTCTC
CAAGCAAAAAAGTGAAAATCGCAAAAAATTTTTGTTACTATTGTTTTTGA
AAATCCGGTGCGCTTCTGATTGGTCAAGCGCTGAAATTTTGTTGTATTAA
AAATACAATGTCACGTGACCTAGATAGGATTTCCTACCTATAACCACGGC
ACATTTTTCAACCATAGCATTCCATCTAGCCCTCCCTAACTCCTTGAGAA
TGATATGAATTACGTTGAAATCTATATACTCTTCTGTTTTCATTTCCAGG
CCTTTCGCCATCGAACGTACATCAACTCACCACGTGATGTAGTGATTTAC
GAGCATAAGAAATCAACAGCCTTCAATAAACTATTAACATTGGTTGGTGT
TGGACAATGGTTTGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCA
TGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGAAAACCTCATT
TTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTGC
CTTCTTTAGTTGGATACCCATTGATGAGTAAGAAAACCTCGTTTTTTTCG
TGACTGGTTACATGAGTACAGTCATGTTTTAAAGTATGCCTGCCTTCTTT
AGTTGGATACCCATTGATGAGTAAGAAAACCTCTTTTTTTCGTGACTGGT
TACATGAGTTCAGTCATGTTTTAAAGTATGCCTGCCTTCTTTAGTTGGAT
ACCCATTGATGAGTAAGAAAACCTTATTTTTTTCGTGACTGGTTACATGA
GTTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGCTGGATACCCATT
GATGAGTAAGAAAACCTTATTTTTTTCGTGACTGGTTACATGAGTTTAGT
CATGTTTCAAAATATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGT
AAGTAAGCCTCGTTTTTTTCGTGACTGGTTACACGAGTTTAGTCATGTTT
CAAAGCATGCCTGCCTTCTTTAGCTGGATACCCATTGATGAGTAAGAAAA
CCTTATTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAATA
TGCCTGCCTTCTTTAGTTGGAATACCCATTGATGAGTAAGTAAGCCTCGT
TTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTG
CCTTCTTTAGCTGGATACCCATTGATGAGTAAGAAAACCTTATTTTTTTC
GTGACTGGTTACATGAGTTTAGTCATGTTTCAAAATATGCCTGCCTTCTT
TAGTTGGATACCCATTGATGAGTAAGTAAGCCTCGTTTTTTTCGTGACTG
GTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGCTGG
ATACCCATTGATGAGTAAGAAAACCTTATTTTTTTCGTGACTGGTTACAT
GAGTTTAGTCATGTTTCAAAATATGCCTGCCTTCTTTAGTTGGATACCCA
TTGATGAGTAAGTAAGCCTCGTTTTTTTCGTGACTGGTTACATGAGTTTA
GTCATGTTTCAAAGCATGCCTGCCTTCTTTAGCTGGATACCCATTGATGA
GTAAGAAAACCTTATTTTTTTCGTGACTGGTTACATGAGTACAGTAATGT
TTTAAAGTATGCCTGCCTTCTTTAGTTGGATACGCATTGATGAGTAAGAA
AGCCTCGTTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAG
CATGCCTGCCTTCTTTAGTTGGATACGCATTGATGAGTAAGAAAACTTTA
TTTTTTTCGTGACTGGTTAAATGAGTTTAGTCATGTTTCAAAGCATGCCT
GCCTTCTTTAGTTGGATACGCATTGATGAGTAAGAAAGCCTCGTTTTTTT
CGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTGCCTTCT
TTAGTTGGATACGCATTGATGAGTAAGAAAACCTTATTTTTTTCGTGACT
GGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTG
GATACGCATTGATGAGTAAGAATCCTTTTCTTTAATTTTCACATCTTTGA
ATTTGAAGCTCTTGTCATTTGAAACGATATACTCTCAGGTCCCTAATAAA
CAGGGGAGGGGGTGAAATCTGAAAATATTTTCAAAAATTACTAAACGGAA
GAGGTCCTAATAAGGTCCAGGGAGGTTGGTAAAAAATCGAAAAATTAACA
AGTGGGGTGGACTCGTTTTTATGGTTGCTATGGATATTACATTAACGTTG
TATTGACGTTATAAACGTTGTATTGACGTTATACTGGGTAGTCCAAAAAA
AGTGTCCATAAAATTCATTTTTTGACGTAGCTTGTTTTTGTGGGTCTATT
GACTTGAAATTTGGTACAGGCAATCTTTAGCATAACTCTGAGCACTTCTC
AAAATTTCATTCTCAGAAAACAATTTTTCGAAAAGTTACAAACATTTTAA
TTAAATGTGTCGAAATCGCCAAAAATTGACGTCAAAACATATCAAACTAG
TTTTCGTCTCCTGTTTTCTTTTTGTCCGCGGCGATCTTTTTCTCCGCTTT
TGCAATGCCGCCCTGGACTCTCCTTTGCGGTTAACTGTTCATCGATTAGC
TTATGAATGATACCTATATGCCTATATTGTATAGGAATTTAGATTTTGAA
CTTTTTTTTGTAGGTCGGAGAAAAGGAAAGAAGGAAGCACACGTCTACCA
TTAGCTGATTGGAAGGTTTCTTCATTCCATTGTTATTATTTGACCAGTCT
GACTACTTTTTGACGTAAAAAGGCACAAAAAGTTATACAGCCATAGCTGA
ATGAATTTATACAATAAAGATATTATACAATAAAAGTATTCCCTATTGGA
AAGCACAAATTCGACGTAAGTTAATGATACAATAACTTTACTTGGTCGAG
GAATGAATTTGTCGTCAGATTTTGTTATTAGACGAGACTGAAAGTCGCTC
GTCACAACATTAGACTTGATTCCATTGATTCCATTATAGAGGTCATTTCA
ATTGTTCTGTTTCTTAGTATCGTGCTGGATTCTCATTGTTTGTGATTGGT
ACATCCACTGCTATGTTGGTGACCATTTGTGTCTTGTCACTTAGGTTTGT
TTGATTATTGAAATGATTCTATATTCAAATGATGTTTTTTTGCACCCCCG
CCTGTGGTTTTAGGTGGCCATCATCTGAGACTATTTTGTCCTGACAACTC
TCTCGCATCCCGTATCAACTCTCACGTGTAATCAGCGAATTCTTATCTTA
TTCTCGTTATTGCCCCAAATTACCAAATCCTCATAAGATTCGTGAAGTTT
CAACCTCAAGGGAATTTTCTTACGAAAGACCTACTGAACTCAAAAAATGA
CTATTATATGGGTTTCGTACTTCGAATGAATAAGTTTATTTGCAATATAT
TCTCCTTTTCTAGATCAGTAACATCCATCACATTGATGAAGAACAGCTCG
AATGTTTTAATCAATACAATTACGCCCGTAGGAACACCCTTCAAAACGAT
CACGCCCATTACTGAAGTCTCAGCCATTCAACAGCGCACAAGTTAGATTT
ACTGTTTCCTGTGTACATTTCTTCTCGTTTTTTGTTACTTCTCAGCTATA
TAGATATTGAGTTTGTGGCAGTATTCAGCTCCATTTACCGATCGTGTATG
CTTATTACCTCCGAAACAAAATCAAAAAGTCACAAGATCATTGTGCTGTA
CTGACATTTACAGTGTGTCTCAAAAAGCGGACATTTTTCATAAAGTAAAG
TCCTCAAAATACATTATCTAAAGTGGGTTTAGAATGATTGAAGTAAGATT
AAAATTAACTGTTTGATCAATAGATATTCAATTCCCAAGATAATTGAATA
TGTTTTTGAGATTAAAGTATTAAGTATACGTCATAAAGCCTCGCATGATT
ATGAGGATTTTACTTTTATATTTTATTATTTCTTTGTTTCTTAACGAATT
GTTCTTTACTAACTGCAGTTTCGTAGAGATGTATGAATCCAACGACAACA
CTAAATTGAATTACAGTGGACTTTTGTTCATTCAAACTTCTATTATTCGA
ATCTTTCTTTAATTCAAACTCTTTCTATAATTCGAACTTTTCTTCATTCC
CCGTCAAGGAGAAACCCTCGTGAAATACTTTCAATAATCCGAATCTTTCT
ATAATTCGAACAAAATAGACTCCTCGTTCGAGTTTGAATTAGCGAGACTT
ACTGCACATTTTTTCATTTTCAGCGCAAGCTGGTAACATCCCGTTGAAGT
TGAAGAGTCATCGTTTTCATTTCTTGGTCGACAAAAGTGGACATTTTCTA
CAACCTACACTCTTCGATCGGACAGTTGGTATAAGTAGAAATTTCGGACA
GGTCAAAAAATGACACAATTATTTTAAAGATAGTCAAGGAATTTTGAATA
AGTATTATTTTTTAAATAGAAATTTTTACTTTTTTGATTTTATTGTATAT
TTTTTCGTTTTTTGTTTTATAAGAAAATACCATAACC

Coding sequence (CDS) from alignment at sc0000070_pilon:1529320..1534456-

>MSTRG.10242.1.p1 ID=MSTRG.10242.1.p1|Name=MSTRG.10242.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4050bp|location=Sequence derived from alignment at sc0000070_pilon:1529320..1534456- (Clytia hemisphaerica_ch_hm2_pilon)
CGCAAGCTGGTAACATCCCGTTGAAGTTGAAGAGTCATCGTTTTCATTTC
TTGGTCGACAAAAGTGGACATTTTCTACAACCTACACTCTTCGATCGGAC
AGTTGGTATAAGTAGAAATTTCGGACAGGTCAAAAAATGAATCAGTAACA
TCCATCACATTGATGAAGAACAGCTCGAATGTTTTAATCAATACAATTAC
GCCCGTAGGAACACCCTTCAAAACGATCACGCCCATTACTGAAGTCTCAG
CCATTCAACAGCGCACAATATCGTGCTGGATTCTCATTGTTTGTGATTGG
TACATCCACTGCTATGTTGGTGACCATTTGTGTCTTGTCACTTAGGTCGG
AGAAAAGGAAAGAAGGAAGCACACGTCTACCATTAGCTGATTGGAAGGCC
TTTCGCCATCGAACGTACATCAACTCACCACGTGATGTAGTGATTTACGA
GCATAAGAAATCAACAGCCTTCAATAAACTATTAACATTGGTTGGTGTTG
GACAATGGTTTGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATG
CCTGCCTTCTTTAGTTGGATACCCATTGATGAATGTGGCTTTACACATTA
CGTCACCTTTCTCTTACTGGAATAAGTAAGTCATCTCAATTCGCTGGATC
CAAATGGCTACCAAGGGTAACAAAGCGCAAGCTGGTAACATCCCGTTGAA
GTTGAAGAGTCATCGTTTTCATTTCTTGGTCGACAAAAGTGGACATTTTC
TACAACCTACACTCTTCGATCGGACAGTTGGTATAAGTAGAAATTTCGGA
CAGGTCAAAAAATGAATCAGTAACATCCATCACATTGATGAAGAACAGCT
CGAATGTTTTAATCAATACAATTACGCCCGTAGGAACACCCTTCAAAACG
ATCACGCCCATTACTGAAGTCTCAGCCATTCAACAGCGCACAATATCGTG
CTGGATTCTCATTGTTTGTGATTGGTACATCCACTGCTATGTTGGTGACC
ATTTGTGTCTTGTCACTTAGGTCGGAGAAAAGGAAAGAAGGAAGCACACG
TCTACCATTAGCTGATTGGAAGGCCTTTCGCCATCGAACGTACATCAACT
CACCACGTGATGTAGTGATTTACGAGCATAAGAAATCAACAGCCTTCAAT
AAACTATTAACATTGGTTGGTGTTGGACAATGGTTTGTGACTGGTTACAT
GAGTTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCA
TTGATGAATGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAA
GTAAGTCATCTCAATTCGCTGGATCCAAATGGCTACCAAGGGTAACAAAG
CGCAAGCTGGTAACATCCCGTTGAAGTTGAAGAGTCATCGTTTTCATTTC
TTGGTCGACAAAAGTGGACATTTTCTACAACCTACACTCTTCGATCGGAC
AGTTGGTATAAGTAGAAATTTCGGACAGGTCAAAAAATGAATCAGTAACA
TCCATCACATTGATGAAGAACAGCTCGAATGTTTTAATCAATACAATTAC
GCCCGTAGGAACACCCTTCAAAACGATCACGCCCATTACTGAAGTCTCAG
CCATTCAACAGCGCACAATATCGTGCTGGATTCTCATTGTTTGTGATTGG
TACATCCACTGCTATGTTGGTGACCATTTGTGTCTTGTCACTTAGGTCGG
AGAAAAGGAAAGAAGGAAGCACACGTCTACCATTAGCTGATTGGAAGGCC
TTTCGCCATCGAACGTACATCAACTCACCACGTGATGTAGTGATTTACGA
GCATAAGAAATCAACAGCCTTCAATAAACTATTAACATTGGTTGGTGTTG
GACAATGGTTTGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATG
CCTGCCTTCTTTAGTTGGATACCCATTGATGAATGTGGCTTTACACATTA
CGTCACCTTTCTCTTACTGGAATAAGTAAGTCATCTCAATTCGCTGGATC
CAAATGGCTACCAAGGGTAACAAAGCGCAAGCTGGTAACATCCCGTTGAA
GTTGAAGAGTCATCGTTTTCATTTCTTGGTCGACAAAAGTGGACATTTTC
TACAACCTACACTCTTCGATCGGACAGTTGGTATAAGTAGAAATTTCGGA
CAGGTCAAAAAATGAATCAGTAACATCCATCACATTGATGAAGAACAGCT
CGAATGTTTTAATCAATACAATTACGCCCGTAGGAACACCCTTCAAAACG
ATCACGCCCATTACTGAAGTCTCAGCCATTCAACAGCGCACAATATCGTG
CTGGATTCTCATTGTTTGTGATTGGTACATCCACTGCTATGTTGGTGACC
ATTTGTGTCTTGTCACTTAGGTCGGAGAAAAGGAAAGAAGGAAGCACACG
TCTACCATTAGCTGATTGGAAGGCCTTTCGCCATCGAACGTACATCAACT
CACCACGTGATGTAGTGATTTACGAGCATAAGAAATCAACAGCCTTCAAT
AAACTATTAACATTGGTTGGTGTTGGACAATGGTTTGTGACTGGTTACAT
GAGTTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCA
TTGATGAATGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAA
GTAAGTCATCTCAATTCGCTGGATCCAAATGGCTACCAAGGGTAACAAAG
CGCAAGCTGGTAACATCCCGTTGAAGTTGAAGAGTCATCGTTTTCATTTC
TTGGTCGACAAAAGTGGACATTTTCTACAACCTACACTCTTCGATCGGAC
AGTTGGTATAAGTAGAAATTTCGGACAGGTCAAAAAATGAATCAGTAACA
TCCATCACATTGATGAAGAACAGCTCGAATGTTTTAATCAATACAATTAC
GCCCGTAGGAACACCCTTCAAAACGATCACGCCCATTACTGAAGTCTCAG
CCATTCAACAGCGCACAATATCGTGCTGGATTCTCATTGTTTGTGATTGG
TACATCCACTGCTATGTTGGTGACCATTTGTGTCTTGTCACTTAGGTCGG
AGAAAAGGAAAGAAGGAAGCACACGTCTACCATTAGCTGATTGGAAGGCC
TTTCGCCATCGAACGTACATCAACTCACCACGTGATGTAGTGATTTACGA
GCATAAGAAATCAACAGCCTTCAATAAACTATTAACATTGGTTGGTGTTG
GACAATGGTTTGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATG
CCTGCCTTCTTTAGTTGGATACCCATTGATGAATGTGGCTTTACACATTA
CGTCACCTTTCTCTTACTGGAATAAGTAAGTCATCTCAATTCGCTGGATC
CAAATGGCTACCAAGGGTAACAAAGCGCAAGCTGGTAACATCCCGTTGAA
GTTGAAGAGTCATCGTTTTCATTTCTTGGTCGACAAAAGTGGACATTTTC
TACAACCTACACTCTTCGATCGGACAGTTGGTATAAGTAGAAATTTCGGA
CAGGTCAAAAAATGAATCAGTAACATCCATCACATTGATGAAGAACAGCT
CGAATGTTTTAATCAATACAATTACGCCCGTAGGAACACCCTTCAAAACG
ATCACGCCCATTACTGAAGTCTCAGCCATTCAACAGCGCACAATATCGTG
CTGGATTCTCATTGTTTGTGATTGGTACATCCACTGCTATGTTGGTGACC
ATTTGTGTCTTGTCACTTAGGTCGGAGAAAAGGAAAGAAGGAAGCACACG
TCTACCATTAGCTGATTGGAAGGCCTTTCGCCATCGAACGTACATCAACT
CACCACGTGATGTAGTGATTTACGAGCATAAGAAATCAACAGCCTTCAAT
AAACTATTAACATTGGTTGGTGTTGGACAATGGTTTGTGACTGGTTACAT
GAGTTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCA
TTGATGAATGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAA
GTAAGTCATCTCAATTCGCTGGATCCAAATGGCTACCAAGGGTAACAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10242MSTRG.10242Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10242.1.p1MSTRG.10242.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10242.1.p1.exon6MSTRG.10242.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10242.1.p1.exon5MSTRG.10242.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10242.1.p1.exon4MSTRG.10242.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10242.1.p1.exon3MSTRG.10242.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10242.1.p1.exon2MSTRG.10242.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10242.1.p1.exon1MSTRG.10242.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070_pilongenomesc0000070_pilon:1529320..1534456 -