MSTRG.10219.1.p1 (mRNA) -

Overview
NameMSTRG.10219.1.p1
Unique NameMSTRG.10219.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000070_pilon:1040809..1048490-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10219.1.p1 ID=MSTRG.10219.1.p1|Name=MSTRG.10219.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7682bp|location=Sequence derived from alignment at sc0000070_pilon:1040809..1048490- (Clytia hemisphaerica_ch_hm2_pilon)
AGAGGGATTACACTGGCATGGACAGGTCTGAATGACCACAAAGACAACAC
AATTGACGGAACGTTTGAATATTTAACCGGTATCGACGGATTTGTCCCTT
TATCACCTCTCCCATCAAACAGCATTCTGAAAGATTGTGCTGCACTTCAG
GTATATACTAAAAAACTTTTTTTTTCATTTGCAGTTTCTGTGAAGTCAAG
CACTGTGGTGTGGGGGGCTACTCTTGAGTACCTAATAGTCGGGGGGGGGG
GGGGTTGGTAAAAATTTCAAAACTTAATAAGCGGGGGGGGGACTGCAATA
AAAATGGCCTGGGTGGACAATTTTTGAAAAGGAGGCTAAATACAGCAGAA
TTAGGACAAAAGATTAAAAAATTGATCGAAAAATTAATCATGGGGGGGGG
GCTGCTGGAGACCAACTTTATGCTCCCCAGGGGGGCAGTGGGTATGACGG
TATGTGCGGGGAACAGATTGGCTTTTAGAATCGCACCCTTACAGTGAAGA
AGAAAATCGGTGAAATTCATACCCTTACAGTGCATTTTTTCAACAATAGA
GCAAAAGAAGCAAAATTTTTGAGCAAAAATCGGCAATTTTTCCTAGATTT
GCTGAAATTTCCACCCATACAGTGCATTTATCAAAAGTCTACCCTTAAAA
TGCATTTATGATATTTTGAAAAACATAGCCTTAACTGCCGCACATACCCG
TCAGTCAATTTGCCTGACTGCCCCCGAGTCATACCATATCAGTTTTTACA
GGAGTTTAAGGTCTTCTTACAGTATATGGCCCCCAAAACGGAGACGGCCC
CCAAAACGGAGGTTTTCATTGAAATGAAGATTCTGACTTGTAGATTTATC
AGAATTAAACGATTTTTGTTTATTTTGAAAGAATGATGGTTATACTTAAA
AATGAGCATGTTTTTGCTGGTTTGAGACAGATTCAAAATAACATATTTGC
GTCTAAAGGAAATATTTTAACACCAAAATTAGATGAAAATTGCATATAAC
TCACTCTAGCTCCTTGGATATTGAAAATAAGTTATGAAAACGGGGTATAG
AAAACTTTCTACACCTAATGCCGTTCAGAAAATACAAATACATATATATA
GCATCTTGAAGGTCAACCAGTATTTTGGAGCCCTAGAATCAGCATTGACA
AAACCGAAAATTCTAAATATGAGAAAAACAAAAAATATTGGAATTCTACT
CCTATCGCCTTGAGTTAATAGTTTATAACAAAAAATTAACATTATATATA
AAAATTTTCGCTGAATCAGCAAAAACGGCAAATTCTGTAATTTTTTTGCA
AAATATAGGAGAAAAATATCTTTAAAGCTTAATATTTTCAGTTTCAGTTA
AGCTTTTTTCTAAAATTTTCACAGCTTATTCCATACATGAATGGAACTAT
TTTCAAAAGAGATTTGTTTTCAAAAACTTGATTAAGACGTTGTTAAATCA
AAATTGTCATTTTGAAAATTTCTAAATTTTCAGTTTGGACTTTGCAATAT
CGAAAATCTTGAAATATTTCATAAAAATCATAAGTTTTACATCCATCGGG
TCGTAAATTTAAGGGAAAACACAAATATGTTCATAGTTTTTCCCCCTACT
ACCACTGGGCTTAATAATTTGATTTTAACTACACCTCCGTTTTGGGGGCC
CCAAACCTGCATTTTGACAACCAGGGGTGTACTGTAAAAATTTTATCAAA
TAAATTTATCCCCAAAACGCTCTAAATCATATTTCAAAACTATGGTCAAA
ATTTTGTATTCATATCTTAAAGATATCTCGAGAAATCGCTAAAATTTTAA
ACCTCCGTTTTGGGGGCCATTAGAAAAAAGCTACCTATCTTTAAGCGATT
GAAAAATATTGTTGAAATTGAAAATTTTGAAAAAGAACTTCCAGGAAATA
AAGTAGAGATGTTAAAGGTTTTCATGCAGCAAAAATTTTTGTAAAATCTC
TTTTCCTCTAGATTTGAGAGAAATTTCAAATTTGATCGCCGTTTTGGGGG
CCACATATACTGTAGTCATTATAAAATACACTGATCTGGTAATCTACTGT
TTTAGCTTTTTCGTCAAATTTTCATTTGTTGTAAATAAAAAGCAAGTTGC
GATTTGGATCACATTATTATTTTCGACTCTTGGGATTGGTAAACAAATCC
ATTTAAGCTCTAACCCAGCTTGCACACAACGTTGTTTCAACGTTTATCTA
ATGTTCACAACGTCCGTATAACGTTAGATGAACGTTGAAACAACGTTGTA
TGTCAGCTGGGAACTGCTAAAAAATAGAGATAAACGAAAGCCTTCCAGAC
CGGGGTATTTTATAATGACAATCTGTTTAGACACGACCTGTTAATTTAAA
AGCCTAAGATTTGTAAGATTTTTAAATTGGCCAACAATATATTATTTAAG
TACAAGAAGATTTTTAGGTTTAGAACACCCAAAGGCCTCTTAACCTTTTG
ACGTTCTCAAAGGAACTGAAATTTTTACGCTTTTTACGTTTTCAGGTTGG
AAATGAAAATAAATTCGAAGTTCGCTCGTGTGGTGGGACAACAAAAATAT
GGTCGATTTGCAAAATGAATTATTTCCGCCTATCCATTATCTTTGTACCA
GCTGAAGTTCCACAAAGAGACGAATCTGACGGAGTATTAACCGAATTGAA
TTGGTCAGATGCGGATCAAGAGTGCAAGAACAAAGGGGGAGAATTGATGA
ACATTTGTGGCATGAATAGTGTTATCTTACGTCGAATTTTACGCAAAAGG
TATCAATAGATATCGTTTGTTTTCTAAAGTTTGCAGTCTTTTTTCCTACC
ATGCAGAAACCACTCAAGGAAATTAGTCTAATAATAAGACTTCTGCTCAT
ACTCTAGCGAAACGAGTTTCTTATAGGAGCTATATCTATTGAGTTACATT
AAAAGTGAATTGGAAATACTTATCCACGCAATGTTATCCACAGTTCACAT
CATTGGTATACATCCTGGTGCAAGACAAACTTTGTCGCCTAATTTAGGAA
AAAAAACATCCCAATTCTTCGGTGTAAATACTTCAATTATCGGCTCAAGG
ATATAATTGCATAATTTTTCAATATTGCTAAGAATTCAGAATACGCTGTC
TCAGTGTTACACTTCGTCGGCCTAGAAAACAAAAAGCGAAAACAACCGCA
GCACCCTCAGCCAAAGTACAACTTTCTCTTTACAAAATGTATGAATCTCA
AACTTTTTGTACAGTTTTTCAACTTTCCCTATATTTGAATTTGCCTTGAT
TGTTATTTTTTCAGGAATATCGATACTCCAGTTTGGATTGGAATGAATTA
TGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATGGAGTCTCAAAATTTA
GGAGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACCCTTTAGCACCT
AACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGTGGAAGAGGCAC
CGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCACCATCGCACCCA
ATAAGAAAATGTTTGTTTGTCAAATCAAAGAGTCAACAAATAACGATTTG
GTGAACGATACCTTGAACGAAGTGGAAAAATAAAGGAATCATATCTTTGC
TATGATAATCAAATGATTTGGAGACTTTTAAACATTTTTAGCCGTTTTTT
GTTTCTTTTTTATAAACTTGGCATGGACAGCAGTAGCGTGGTTAGACTAG
AGTATACTTCTGATTAAACTTTTTGATGATTTTGATGGCGCTGAATCCAG
TGAAGTAGACTAGAGGATTTTGCCATCTTCAATCTTTTCACTTTCATTTT
CAAAAATTATATGAAAGTAAATGAAACTAAAAAAAAACAAGAAAATACCT
CCAAAATTTGAAAAAATTGGTCTATTGGTTCTTTGTTTGTTTTTCTCCAA
AAAGGGACTGGATCTAGTGGCATGTATTTGCTACTACATCAAGCAAAGCC
AAAATATGAAGCCTGCCAAATTACGCCGGGTCACTTATCAGCGCCATCCA
GTCTATCAAAAAGCTATAGTATAAGTGGCTCCCGGGCTATAGCGTGGGTC
GACCAAAGTTTGGGCAAACTTGGGAGATGAATTTCAAAATTTGCTGTTTT
GGCGCTGATGATCGATTATTTGCGATATATCTTGTTATATCATATTTCAG
AAATCAATGCTCAATAAATAGTTAATAATAAATAAATAGTAAAGAGAGAC
TTAAGATCGAAATAACACCTTAATCCTTAACTTGATTTTTCAACCCCCTC
TGTTCTCTCAAAGAAGTTGATAACATTTCAGCATTTTCAACAGCTGCACC
AATGGAATAGTTACAAAAGCAATCATTGCGTACGCTTTTTAAAAGTGACC
CTTACAGAACTAATCATAAAACAAATACCCTAATCCCATTAATTTTCGCG
TGAATTAACTTCTGTTTTTCATGTATTTTTTGCCCTCTTCACTTATATTT
TTCATCGAAAATACTCAAAATAATATCCCAGATATTACAAGATGTGCGAA
AATAAGAGGCGTGAAAATAAAAGGAACGCAAAAATTAATGGGATTTATTT
AAAACGAAAGTTTAACGACTTGATGTCTTCCTGCACGATTGGCAATCTTT
TTTAATCTCACTTGTTTTCTGCAAGATAACCGAGATCAAATCACGTAACA
TAGCTTTTTCTGTATAATCAGGTCCTCCAATCTGACAAAAAAATTGTTTA
GGAACAAGGATAAGTGCCCCATCGTCTTGACGACCGCCACACAAATTAAC
TCCAAAACACCCTTGACCAGCAAGGAAGAATACACATTGGCCGCTTGGCT
CGGGCGCGGGCGTTGTCGAACTTTCATCAATGGCGGGTTCATCAGTGCAC
CAGTTTGGAGTATACACAACAAATTTGATTGAAGATGATTTTGCTTTCAA
TTGCTTTAGTTCCACTGCTACATTTGTTTATATTTTCTTTAATGAACAGA
ATCGGAAAGTACACTTTTTTTTATAAGAACATCCAACATTTTTTAAGCCT
TCGGATGTTCTTAACTTTTTGGGTTTTAAGCTTAAAAATGTTCTTAACAT
GTTCTTATTTTCACCATTTTGTGACCATTTTTACTTTTTACCCATTTTCC
AAATTTCAACCACTTTTCTTTTTCCGATGGCATCTTAACTTTAACTTCAC
CATAACTTGAACAATACCCATAATGCTTATCTCTTGCTGACTCTTTACGA
AAACCGTTCAAACAGTTTACACAATAGTGGTACGCTTCTTTGTGTTTACT
ATTCATCAATCCTAACAGCCTAGATAAATTTTTCACCGCCGTATAATGTC
TTTTTTCTCCCTCAACAATCATCAATAAATCGACCTGCTTGCTACGCTTA
CTATTAAAATTAGACCTACTCGCAATATTTATACTCTTCTGATTAACAAA
CATTACGTTTACTGCGATCTCAGGATTATTCTTTTCAAACTTGCTAATCT
TCCTATAATCCGTCGGAAAATCCAATCCCTCCCAATTATATCGCTCTACA
TAAGGCTCTAATTTTGCAATACGCTCGGGATGAACATCAATTTCCTCATG
ATGCAAAGCTGCTATCACAGCCCATTTAAAACACTCTTCATCCTTGTTTT
TAGGATTTATAACCGCCTTCTTTGATGCTATCCAATCTGGCAATTCAATA
TGTGAACCGCCTCGAGTCAGCTCCAATTGATGAAAGTCAATATCTAAATG
CATAATATAATCAAGAGTAAAACCACTCTTAGGTAACGCAGGATGCTCAG
TTTGAGTCTTAATATGAGCAAACATACTCTGTAAAATCTCTTCTACATTA
CTACCTTGAAACACCTCTGTCATCTTACTGTTAAATACCTTATCCACTTT
GATCTCATGAGCGTTTTTAGTTTGTTTATATTTTTACTTATCATCCTCGC
TCCAACCTTCCATATCTTCATCATCTAACCTCATAATTTGCTCTTCTTTC
TTCCACATTATCCATATATGCATCTGAACTTTGGCTGCAACCAACACTTC
CACTTGCTCTTCAATAAGCTTTTGAAATTTAGGCTTCACAAGAGCTATAT
AACTATCAACATCTGTTTTTTCTTGTCCGCTTATCCTAAAACTCTTATAT
GCACCGTTCATCGCTTTCTTATGTTCTACAGGCATCAGACTTTTAACATC
TTCATTTTCATATTCTTTTTCAGCCTCTTCTTCAACTTCTTCTAACAATG
TCTTTTTACCTTTTCCTACTACAGCGCTTCTACCTTTTTCATACAAACTC
ATAACACTATTTTTTACCTTTGAAAAAGCGTTCCCAACTGGCTCTTTAAT
TGATTTAGGCACGTAATTTATTAGCCAGTCGTACCACTCATTTAGCTTGC
TCTTCACAACTGACCTATTTTTCATCATCTCCTGCTGCTCAAAAATATCT
GTGCTTTCAGGTTTAGGTAACAATGTAACTTCACGAAGTGATTTCTTTTG
ACCAGGTCTTCTTGGCGGTCTTACTGGAACTTCTAATAAAGAAACAAGCT
CTCCCTTTCTAAGTTTGTGATATCCTCTTAAACCACGCTCTTTAGCAATG
GCTCTTAATTCTTTAATCGTTTGATTGTTCATATTTATTATAGACTTTTT
AGAATTTAAAAAATTCTTTAAAGTGGTCGTAACTGAGACAGACATTTTTA
TTATAGATTCAACCTCCAACTAACAACTTTTAGGGAATTTCCCTTTTCGA
TTTTTGACCACTTTACAAATTTTCAAATCATCAAAATATTCAACAAAATT
TGAAAGTTCATTCCTTTCAAATTTTTAACAACTCAGCATTTTTTCAAATC
GCGCGGATCATTTTTGTCGCGCGGATCATTTTTGTCGCGCGGATCATTTT
TGTCGCGCGGATCATTTTTGTCGCGCGGATCATTTTTGTCGCGCGGGCAA
AAGTGTCGATGACGTCATTGAATGGGAATTTCCCTTTTACTCACTTTCTG
TACGGGAATTTCCCTTTTACTCACTTTCTGTATGTTCGTTCGCGTGCGTT
CGTGTGCGCGTGTCCCAGAACCCGAGGTAAACCTGTACCCTCTTTAGTTT
ACTGAGAGCGTGATTTTATCGCTATTTTTTAGGATAATTTCACCCTTTTA
CTCACTTTCTGTATGTGCGTTTGTGTGCGTTCGCGTGCGCGTGTCCCAGA
ATCCCCCAACATATATCTCTGTTTTTCAACTTTCCCTATATTTGAATTTG
CCTTGATTGTTATTTTTTCAGGAATATCGATACTCCAGTTTGGATTGGAA
TGAATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATGCAGTCTCA
AAATTTAAGAGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACCCTTT
AGCACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGTGGAA
GAGGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCACCATC
GCACCCAATAAGAAAATGTTTGTTTGTCAAATCAAAGAGTCAACAAATAA
CGATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAAAGGAATCATA
TCTTTGCTATGATTTTCAAATGATTTGGAGACTTTTAAACATTTTTAGCC
GTTTTTTGTTTCTTTTTTATAAACTTGGCATGGACAGCAGTAGCGTGGTT
AGACTAGAGTATACTTCTGATTAAACTTTTTG

Coding sequence (CDS) from alignment at sc0000070_pilon:1040809..1048490-

>MSTRG.10219.1.p1 ID=MSTRG.10219.1.p1|Name=MSTRG.10219.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2169bp|location=Sequence derived from alignment at sc0000070_pilon:1040809..1048490- (Clytia hemisphaerica_ch_hm2_pilon)
GAATATCGATACTCCAGTTTGGATTGGAATGAATTATGATACTTCAAAGA
AGAAGTTCTTTTGGAGAAATGCAGTCTCAAAATTTAAGAGGTGGTGTCGT
GGAGAGCCTTCATTAAACCCAGACCCTTTAGCACCTAACCAATGCGTGGC
TTACATAGTTGGTGGAAAACCCCGTGGAAGAGGCACCGGAAAAGGTTGCA
TTAGGGTGGAGCCATGTGGAACCACCATCGCACCCAATAAGAAAATGTTT
GTTTGTCAAATCAAAGAGTCAACAAATAACGATTTGGTGAACGATACCTT
GAACGAAGTGGAAAAATAAGTTGGAAATGAAAATAAATTCGAAGTTCGCT
CGTGTGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAATTATTTC
CGCCTATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGACGAATC
TGACGGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAGAGTGCA
AGAACAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGTGTTATC
TTACGTCGAATTTTACGCAAAAGAGAGGGATTACACTGGCATGGACAGGT
CTGAATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTAAC
CGGTATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCATTC
TGAAAGATTGTGCTGCACTTCAGGAATATCGATACTCCAGTTTGGATTGG
AATGAATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATGCAGTCT
CAAAATTTAAGAGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACCCT
TTAGCACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGTGG
AAGAGGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCACCA
TCGCACCCAATAAGAAAATGTTTGTTTGTCAAATCAAAGAGTCAACAAAT
AACGATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAAGTTGGAAA
TGAAAATAAATTCGAAGTTCGCTCGTGTGGTGGGACAACAAAAATATGGT
CGATTTGCAAAATGAATTATTTCCGCCTATCCATTATCTTTGTACCAGCT
GAAGTTCCACAAAGAGACGAATCTGACGGAGTATTAACCGAATTGAATTG
GTCAGATGCGGATCAAGAGTGCAAGAACAAAGGGGGAGAATTGATGAACA
TTTGTGGCATGAATAGTGTTATCTTACGTCGAATTTTACGCAAAAGAGAG
GGATTACACTGGCATGGACAGGTCTGAATGACCACAAAGACAACACAATT
GACGGAACGTTTGAATATTTAACCGGTATCGACGGATTTGTCCCTTTATC
ACCTCTCCCATCAAACAGCATTCTGAAAGATTGTGCTGCACTTCAGGAAT
ATCGATACTCCAGTTTGGATTGGAATGAATTATGATACTTCAAAGAAGAA
GTTCTTTTGGAGAAATGCAGTCTCAAAATTTAAGAGGTGGTGTCGTGGAG
AGCCTTCATTAAACCCAGACCCTTTAGCACCTAACCAATGCGTGGCTTAC
ATAGTTGGTGGAAAACCCCGTGGAAGAGGCACCGGAAAAGGTTGCATTAG
GGTGGAGCCATGTGGAACCACCATCGCACCCAATAAGAAAATGTTTGTTT
GTCAAATCAAAGAGTCAACAAATAACGATTTGGTGAACGATACCTTGAAC
GAAGTGGAAAAATAAGTTGGAAATGAAAATAAATTCGAAGTTCGCTCGTG
TGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAATTATTTCCGCC
TATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGACGAATCTGAC
GGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAGAGTGCAAGAA
CAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGTGTTATCTTAC
GTCGAATTTTACGCAAAAGAGAGGGATTACACTGGCATGGACAGGTCTGA
ATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTAACCGGT
ATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCATTCTGAA
AGATTGTGCTGCACTTCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10219MSTRG.10219Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10219.1.p1.exon3MSTRG.10219.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10219.1.p1.exon2MSTRG.10219.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10219.1.p1.exon1MSTRG.10219.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10219.1.p1MSTRG.10219.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070_pilongenomesc0000070_pilon:1040809..1048490 -