MSTRG.10214.4.p1 (mRNA) -

Overview
NameMSTRG.10214.4.p1
Unique NameMSTRG.10214.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000070_pilon:959675..964391-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10214.4.p1 ID=MSTRG.10214.4.p1|Name=MSTRG.10214.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4717bp|location=Sequence derived from alignment at sc0000070_pilon:959675..964391- (Clytia hemisphaerica_ch_hm2_pilon)
CGCAAATCTCCTCTTTTAAAGAAATGCTTCGGCTGATTTTATTTATATAA
AGCGTATGTAAAGATAAATGGAGAAAACTCAGACACAACAAGGGATTTGA
GAAGATTGTTATTAAGGTATGGCTATAGAAGTCTCATGCTACAAATTGTA
TTAAATTTTGTTACTCGAGGATAGCCAAGCAAGAATAAAATTGCTGGATC
TGATATTGTAACCTAGGGAGCGGTAAACGACTTGCCGTAGGTGCAGGCAG
AAGATGGAGAAAGTTGCCTTTTCTTTCCGTTGAATGATCTAAGTGTCCTT
GATAGTATAAGATATTAGATATTTGATTAATATTTTATCTGATATTCCGA
TGGCGGATTGGCCAATTTCCCATCGGTGAGGAATGATAGCCGGCCCTTTG
ATGTGCTGCATCCTCAGTCGGGTTCAACTACAAAACAACTATCTTCAAGC
TTTCCAAAGCATAAAAATTGAAGTCTTAACTTTGTGCCGGTGTAACAGAA
AATAAGTACTCTCCGGAAAAAAAGTACTCCCGGAGTACTTATTTCCCGGG
AAATAAATACTCCCCAGTACTTTTCTATTAGGAAACCAGTACCCGCTCTG
GGAAATTTGTACTCCCTGTAAAAGATATCTTAATCTAAAAAACTGTGCAT
ACATTGAAGACCCGCTTTGCAACCTTTGCAAGAAAGTTCCCAGCTGACAC
ACAACGTTGTTTCAATGTTTATCTAATGTTCATAACGTCCAATTAACGTT
ACTTGAACGTTAAAACAACGTTGTGTGCCAGCTGGGTTAAATGAACTTTA
TGTACGAGAGGTAAATGCACTATATTTTCATCACTCGACAAAATATTTCC
CCAATTCTAAATGGTACACACTTAGAGTACTCTCTCACTCACCGAAAGCG
ATCGCTACAAGGATTGCAAGTTAAGGGGGGGGGGACAAAACTAACCAATT
GATTGATTATTTTTTCAAACTTAATCTAATAAACTTATGGCTTGTTTCCT
AGATAAAATAACTCATATTTCATGGAAAGAATTTTCATTCCCCTCCACCC
CCTTCCTTTCACACTGTTACAGCTAATCTGTCAGGTTGTGAATTTAGTTT
TTCTTATAAGCAGAATCAAATTTTCGATTCATCTCTTTAAACCTAAAACT
CTAAACTAACCTTCAAGATGCCTCCAACATTGTTTGTTCTTCTATTATAA
AGTCGTAGTTAGTCAGTCGCAGTCATTGGGTCGTGTAATAAAGGACCCAG
AAGAAGTTTCCTAAAATTGGAATGTGAGAATTTTGAATTTCACTAGTGCC
TAGATGCAGGAGAATATTGCTTATAAGAAATGATTGCTCAATTTAGACGG
TCTCATATCAAGCCGACAAATTGTATCTGAATGGAATATTAATTTTGAAA
TTTATCTTCAGAATCAGAGTTTGAATAACCTATTCAATGTGGCTTTAAAA
GTATTTTGACTTTTCAATATTTAACGATAAACCTAGGCATCCAAGCAAAA
TAATCAGATAGGAATAAAACACTAGCTATTTATTTGCAAATTGACAAATT
TGCGGTTAGGCAACCGATAGGAATTCTAACGCTAATTTGGTAATCGGGCA
TTTTGGCAAATACAATGGATGAAATAATATTTTAAGTTCAGACTCAGAAT
AGGGTAAAATAGTGTCAAACCCATTTCAAAAAGGTATGCTCAAAGCTGCT
GATGCTGTACTCATAAACACTCGACTAAAAAAACTTTTACAGGCTTATAA
TTGCCATAATATTTGGAGAGGCAAATCCCCTTAAGAAGAGCTTCTTTATC
CTACTCAAACTTCTTATGGGGAAGAAAGAGGCAAAAAAAGATAAACGGAT
TTAGCTGCTGAAACCCTTTAACATGTCCAATTGGATTGACTTTATTTTTT
TCTTATATTCAGGATTGTTGCGGAGTTCTTGGATCAAGGAAAGATGGTGC
ACGGATCGTGTCGTTGTCGTGAACGATTGATGTGTGTGAATGCAGGTAGA
GGTGAGTGAAGGTTATTCTTTCGTGCAACTACATTGGTGGTCGTGCAGCA
TTCGCTTTTAGACTGTTTGGCAGCAGTAGACATTCATAGACAAAAAAGTT
ATAATTACCACCCTGAAAATTGTCCAAGATGGCCAAAGAGTTCGATCCTG
TCAGATGCACATCTTGATATCATCATAGCCTAAAAAAAGGAACTTCACAA
GAAGCGTCCCCGTTCCTACTTTTGACTAAGTGACTCCCCCCCCCGGACTT
TATAAACAAGTAGAGAGTCTGATGAAGAGAAGTATTCCTTAAGAGAGGAA
TGCTGGACAGTCGTCCTGGATTTGATGTGCTTCGACCCTTGATTAATTAG
AAACTGTACATTCTCTCTTTGAGGGTATCTATGATTTTCCTTTCCTACCT
AGATTAGCTTTGAAATGTTGTGTTTTAACATGGCACAAATTATGTTGACT
TCTTAGTGATTAGTGGAGGGGGTTTACCGGTATTTGTTTTTTCTACTAGT
ACTCCCGTATTGATGGAAGGTTTGCCGGTCATCGTCAGCCCTTCATTTCA
TTAAATGAAAAACTTCAATAGTTTATATACCAGCGATCAAAGCAAGGTTT
TTCGTTCGAGACGGAAAATGGATTTTACATACAGCTGGGTAGCACATATT
CTTGAAACCTTGGTAAATTCAGCCTCTTACTTCACTTAGACGTAAATCCA
TTAGAGATGATTGAGTATACAAAAATGTTGCTTTATTTTTCAGATGACGA
AGAATTTTTGAAAGAAAAGCAGCAAGAAGTTGAAGAATACAACAAACGAA
TTGGAGATTACGTCGACGGTTTCACAGTCCATGGTCTCACGAAAGTCTTT
AAAGGGAAGAAGAAAGAAAGTACAGTGTGGATGGTTTTCATCTTCGTCGG
TTTGCTCCTGGCTGGCGTTGTGATTGGTCGATTGGTAGCTAAATATTATC
GATTCGAAACATACACAGAAGTAAAATCAGTTGTGACGGCTAAAAATGTT
ATACCGAGTATTTCCGTCTGTGATTTTAGTGAGTTAAGAAAAGCGTATTT
TTCGTATTGTGGTACAACGCTTTTAAGTAAAGATGAAAATCGGACTAAAG
AGTATTGCGATCATTCTAAATTGAATCTGGAAGCGCTGGATAATTCTACA
ATGGTTAATGGCAAATGGAGAAATCGTCTGTTTGAGATTGAAGAATGTTA
CCCGTGGGAAGGTGCTAAATGTAATTCACCCAAATATTTCAAATCCCACA
TGCTTGGTGCGTGCTTCACTTGGAATTATGACGGTGAGTTTCACGATGCA
TACGGACATGTGGATTTCCAATTCAAATACCTCCGGAACAGCAGTAAACA
TCGTCCGGACATCATTATTATACCACATGATCCACGCATCAGTGAAATCG
ATTTGACCAAAAAAATCACCATCGATATGAATAAACATTATGAAATCAAA
ATCGGCAAAACCTACATGATCCGAAAACCACACCCTTATTCGAAATGTAC
CGCTGAAGCAACCAATGCTGAATTAGACGTCTTCCCTGGGAACTACGATC
GACGCACGTGTCGTGAAACATACAAGCAGTTAAATTCCTTCAAAGAATGT
GGCGATATTTTTGAATATTTCAAAAGCTACTTGCCTAAATCATTCATCAA
GAAATACGCACAGAATCGCACAATCGGGGAAATGGAAATGTGTATTTTGA
AGACCATTAATGTTAAACCGCCTGAAGATTTGTGCCCATTCCCCTGCGAG
GAGTTAAGTCTCAATATCCATACAAACGTGTACGATGGAGACAAGCATAA
TAAAGATCTCTACATCTTCGGTATCCAACTTGAGAATGTTGACACCTACA
CTGTAATGGAAGAACAATCGTTGTATTCTGCCGAACAGATGAGTTCTGAA
ATTGGTGGTTTCTTGGGATTGGTTATTGGCGCATCTTTGTTATCATTTGT
TGAGCTGTTCGCTTGCGGTGCATTGTACGTCTTGAAGAAAATCAAAAGTT
GAAACATGATTGGTTTATCGTAAAATGAGAACTCTATTTGTCTTGTGAAT
GGTGACAATTTTATTGAATTGATATTGTGAAATGTCAAATAAACGAATCT
AAAAAAAACGAAAGATTCACTTCGTAATTGCTAGCTCTGGCAGGAACAGT
GTAGATATTTGAAACTCTAAAGATTTTATTTTTATATTTTTCCCTTGAAA
AAGGTAAGACCAAAATTCAAGAAGTTTACGTTTAAAAGACTCATCCCTTA
GTTGCTTAGCAACGAGTAAAGAAACACTTTTCTTCGACACCGTAACTGAG
TTCTCTACCATCACTCTATGGTCACCTTCTTTTTGAAAAAATTACAGTTG
ACATTCTCTAATTCGATAAAAATGAATTGGAATTTCATCGAATAATGGAG
AGTATCGAATAAGACCGTCAACTGTGATAAAACATTGCCCTTGACACCTT
TGCAAGGTTTAAATAAGTATAGCAGAAGTGTTTTTTATCCATATTCCCTA
TGTGAAGTTTTATGATTCACAAACAGTTTTGAACCCACTGATTTCAAAAC
CCTCTCTAATGTTTGCCTTTGGGAATTAACACGACGAGAAAAAGTATTGT
AATGTATTAAAGTGAAAAATTCTGTTTTATTTACCGTTTTACTAAGTAAT
ATTTTACATTGTTTTGTCCTAAGTAAACAGATCTTTTAATAAAGAAATAT
ATTAAGTAATATCTTAC

Coding sequence (CDS) from alignment at sc0000070_pilon:959675..964391-

>MSTRG.10214.4.p1 ID=MSTRG.10214.4.p1|Name=MSTRG.10214.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2634bp|location=Sequence derived from alignment at sc0000070_pilon:959675..964391- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACGAAGAATTTTTGAAAGAAAAGCAGCAAGAAGTTGAAGAATACAAC
AAACGAATTGGAGATTACGTCGACGGTTTCACAGTCCATGGTCTCACGAA
AGTCTTTAAAGGGAAGAAGAAAGAAAGTACAGTGTGGATGGTTTTCATCT
TCGTCGGTTTGCTCCTGGCTGGCGTTGTGATTGGTCGATTGGTAGCTAAA
TATTATCGATTCGAAACATACACAGAAGTAAAATCAGTTGTGACGGCTAA
AAATGTTATACCGAGTATTTCCGTCTGTGATTTTAGTGAGTTAAGAAAAG
CGTATTTTTCGTATTGTGGTACAACGCTTTTAAGTAAAGATGAAAATCGG
ACTAAAGAGTATTGCGATCATTCTAAATTGAATCTGGAAGCGCTGGATAA
TTCTACAATGGTTAATGGCAAATGGAGAAATCGTCTGTTTGAGATTGAAG
AATGTTACCCGTGGGAAGGTGCTAAATGTAATTCACCCAAATATTTCAAA
TCCCACATGCTTGGTGCGTGCTTCACTTGGAATTATGACGGTGAGTTTCA
CGATGCATACGGACATGTGGATTTCCAATTCAAATACCTCCGGAACAGCA
GTAAACATCGTCCGGACATCATTATTATACCACATGATCCACGCATCAGT
GAAATCGATTTGACCAAAAAAATCACCATCGATATGAATAAACATTATGA
AATCAAAATCGGCAAAACCTACATGATCCGAAAACCACACCCTTATTCGA
AATGTACCGCTGAAGCAACCAATGCTGAATTAGACGTCTTCCCTGGGAAC
TACGATCGACGCACGTGTCGTGAAACATACAAGCAGTTAAATTCCTTCAA
AGAATGTGGCGATATTTTTGAATATTTCAAAAGCTACTTGCCTAAATCAT
TCATCAAGAAATACGCACAGAATCGCACAATCGGGGAAATGGAAATGTGT
ATTTTGAAGACCATTAATGTTAAACCGCCTGAAGATTTGTGCCCATTCCC
CTGCGAGGAGTTAAGTCTCAATATCCATACAAACGTGTACGATGGAGACA
AGCATAATAAAGATCTCTACATCTTCGGTATCCAACTTGAGAATGTTGAC
ACCTACACTGTAATGGAAGAACAATCGTTGTATTCTGCCGAACAGATGAG
TTCTGAAATTGGTGGTTTCTTGGGATTGGTTATTGGCGCATCTTTGTTAT
CATTTGTTGAGCTGTTCGCTTGCGGTGCATTGTACGTCTTGAAGAAAATC
AAAAGTTGAATGGTGCACGGATCGTGTCGTTGTCGTGAACGATTGATGTG
TGTGAATGCAGGTAGAGATGACGAAGAATTTTTGAAAGAAAAGCAGCAAG
AAGTTGAAGAATACAACAAACGAATTGGAGATTACGTCGACGGTTTCACA
GTCCATGGTCTCACGAAAGTCTTTAAAGGGAAGAAGAAAGAAAGTACAGT
GTGGATGGTTTTCATCTTCGTCGGTTTGCTCCTGGCTGGCGTTGTGATTG
GTCGATTGGTAGCTAAATATTATCGATTCGAAACATACACAGAAGTAAAA
TCAGTTGTGACGGCTAAAAATGTTATACCGAGTATTTCCGTCTGTGATTT
TAGTGAGTTAAGAAAAGCGTATTTTTCGTATTGTGGTACAACGCTTTTAA
GTAAAGATGAAAATCGGACTAAAGAGTATTGCGATCATTCTAAATTGAAT
CTGGAAGCGCTGGATAATTCTACAATGGTTAATGGCAAATGGAGAAATCG
TCTGTTTGAGATTGAAGAATGTTACCCGTGGGAAGGTGCTAAATGTAATT
CACCCAAATATTTCAAATCCCACATGCTTGGTGCGTGCTTCACTTGGAAT
TATGACGGTGAGTTTCACGATGCATACGGACATGTGGATTTCCAATTCAA
ATACCTCCGGAACAGCAGTAAACATCGTCCGGACATCATTATTATACCAC
ATGATCCACGCATCAGTGAAATCGATTTGACCAAAAAAATCACCATCGAT
ATGAATAAACATTATGAAATCAAAATCGGCAAAACCTACATGATCCGAAA
ACCACACCCTTATTCGAAATGTACCGCTGAAGCAACCAATGCTGAATTAG
ACGTCTTCCCTGGGAACTACGATCGACGCACGTGTCGTGAAACATACAAG
CAGTTAAATTCCTTCAAAGAATGTGGCGATATTTTTGAATATTTCAAAAG
CTACTTGCCTAAATCATTCATCAAGAAATACGCACAGAATCGCACAATCG
GGGAAATGGAAATGTGTATTTTGAAGACCATTAATGTTAAACCGCCTGAA
GATTTGTGCCCATTCCCCTGCGAGGAGTTAAGTCTCAATATCCATACAAA
CGTGTACGATGGAGACAAGCATAATAAAGATCTCTACATCTTCGGTATCC
AACTTGAGAATGTTGACACCTACACTGTAATGGAAGAACAATCGTTGTAT
TCTGCCGAACAGATGAGTTCTGAAATTGGTGGTTTCTTGGGATTGGTTAT
TGGCGCATCTTTGTTATCATTTGTTGAGCTGTTCGCTTGCGGTGCATTGT
ACGTCTTGAAGAAAATCAAAAGTTGAATGGTGCACGGATCGTGTCGTTGT
CGTGAACGATTGATGTGTGTGAATGCAGGTAGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10214MSTRG.10214Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10214.4.p1.exon3MSTRG.10214.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10214.4.p1.exon2MSTRG.10214.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10214.4.p1.exon1MSTRG.10214.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10214.4.p1MSTRG.10214.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070_pilongenomesc0000070_pilon:959675..964391 -