MSTRG.1020.1.p1 (mRNA) -

Overview
NameMSTRG.1020.1.p1
Unique NameMSTRG.1020.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:961256..964653+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1020.1.p1 ID=MSTRG.1020.1.p1|Name=MSTRG.1020.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3398bp|location=Sequence derived from alignment at sc0000005_pilon:961256..964653+ (Clytia hemisphaerica_ch_hm2_pilon)
CGACTTTACAAGGCAAAGGTTACTTTTTCTTCAAGGAAGAGAAAAAGGGG
TATATTATTGACATAAATGACTATAGGACATTGTTACGTTGTTTATGACT
GCGAATTACAAACTCGTATTTTTCGACTTAAAGATAAGTAAGTGGATAGA
TATACCTTCTATCCGTTGAGATTTGTGCATTTTAACAAAAGTTTTGATGA
CTTAGAAGCATTTTTCTAACTGCTTTTTTGATTTGAGTGGCAATTTTGGA
GGCAAGCGCGTGATTCTTACTGATAGATACATGTGTGAAGCTTAAGTTCG
ATTTTGGAATAAAGGCGGACATGTGTAAGTAATACTTTTCCTACAGTTCC
GAAAGTACAGTGGGCCCTACAAAAGGTTTATCTCAACACCTCTCTTTACT
AACGGGAACCATTCTAAATTTCATATCGATTGTTGAAGAGTTTCAATATA
CTTTCAACGCTTACAGCATGAGGAGACATATTATAGGTATTGCTTCCGGT
TCGACCCAACCTCCTCATGCTTTAATGCCCGAAACAAACCTTAATATCTT
TTTTAATTATCCTAACAGTGGTGTGTAATTGTGTCTTTATTTTATCTCGA
TTTCAGATAGCCGAAGAGGTCGAACAGGGTCAAATCCCGAAATCACCTCC
TCCTTGACCGAAGATGATTTGATCGAACGCTTACGTGCGATGACTATCCC
TGAGGTATCTGATTTACAACAGAAAAATGACTCGTTTATCTTTGACGATA
TGTCACAAAGCGGTGATCAAACAGACGGGACATCGAGTCTCAAAAATGAT
AAACCAACGCGGTTGCTATGCGATCGACCTTCTATACAATCACCAGACTT
CGAAGAACTGGAAGCTTCAGCGGgaactgttcacaaaaacattCTTCATT
TACGGCAAGATTTAGACAACCTTCGAAAAGTTCATCAAGATTTTTCCAGG
TCTTTCAAAGCAGACATGCAAAAGAAATTACTTGAGTTCAGAAAGAAAGC
ATCAAGGTTGGATGAACACCTCCAAAACAAGCTAGACAacaacaataatc
actttttcGGTGAGAAAAGTTATTGGTTTCCAAATCTTTAGTTAGCCTCG
TTCACAGAACCTGTAACGATCCCTACACCGTGCTTGAGAAGTGTACTTCA
AATGAAATATCAATATTGGCTAAAACAATATCTAGAAATCTAAACCTTTA
AAGCTTCTACATTTTCTCCATCTGGTAAATATCTAATTACTGATCACAAG
AGAATTTCTATGTCTCCAGAATAAGGTAGATTTGATTTGTTAAATGACAA
AATAATGGTGTGGAGAACAAGAGCATAGAATTCTAGACTAGGTTGGAGCA
ATATTTACCAGGTTATTCAAACaacattaaaggttttgtttttaaataag
agtgatttcgtttcttactcgtcaattttaattcacaagctttttcacat
tgcaTTGACatgtatgtggagcaagattgggcagaaagagaaaaagaaaa
tacacaaagatccaaatgtaaattttggagaTTGAAATATAGCATTGCTA
TCATCATTATTATCATTCTTAAAAACATTCTTTACAGCCAAAGAGTTACC
AGTTCGAGAACAGAGATTCAAATTGACTTCAGACCAAACACATTATCGGA
CCTTGTTGGCTGATTCAGAAAAACAATTATCGTAAGTTACGTTATTGATG
TTGTGGAAAATGAAATGGGTTATACATCTATCAATCCTTAGCAGCGCGGT
CAGCTTTTAAGGGGTTTGGTAACGAATTTACAAGGAAACGACGTCAAAAT
TCTTTGTCCGAAAGGATATCAATGTAACGACTTCAGACATTTTGACATCA
TCCCTTCCGAATAAACTTGAACCTAGCCTCCTCACGTTTTAAAGGTTGGT
ACGTGTAtcgaaaataaaagaatgaatgaattgattgatttatCGAAGTA
TTCATTGATTGGCAAATTCTTTTCTCATTTTATAGTGAACTAGAAATTCA
TATCGAGTTGATTCGACTGAACGTGGTGCAAACAAAACGAATCGAACATC
CATCCCAGATTGAGGATTTTCGTGATGAGTTAACAGACGTAGTCAAGAAT
ATCAGCATTGCCAAAAGTAAGTAAGAACTGAGAATGTATCAGGAAGCGGA
AAGTTCAACTGAAGCTTTCATGTTTAAACACTTCTTTCTACATATAAAGC
TACGcaacaattttttataattaaatTCGCGGAAAATCAGAGAGCAGCTT
TAAGGGATGAGGCTTTAACTACAAGGACaatctttcttttcttccttCTA
GAGAAATATCACGGTTTGGAAGAGACGCTGAAACAGGTCATTCATGCTGA
GCTAGAAGTCATACAAAGAGAGGAACAGTAAGTAATTGACGAAGACCTGC
ACCaagcaggtcgaaatattgtttacacgaaaaatatatacagaatgacc
attaaaatgttatttaaattaTAATCTACATTCGTATCAAAGTATGACAC
TAAAGGCAGTAAGTAATTGTATTTCAGCAGAAGAAATCTTTAAGATTCTT
GTGTCAAACATTTCCATTCCAAACCCCTGTTCCTTTCAATATTCCATTCA
GTTCATGAATGGTTGCCTGGTCCATGAACACAGTGAAAACTAAACTTCTT
GTCCAGTCCAGGATTACTGGGCTATCAACATAAAATATCGACTATATTCG
TCTAAATGTGTAACAAATGCCATGTCCGAAATCCTTCCATTCTTTAGGTT
TCGGAAAGAAGAGCCAAAGAGGATCGAAAATATGATCAAAAGGTGTCGTA
AAATATCTTCCACCGTCGAAACTTTGCAGAAGTAAGTAAATAATAGGTTA
CAAAAATGAAATGTGCGAGACATACAAAACCAAGCCTCGTAATCCACACC
AAATATTGAATTCGTTTCAAGTCACCAATAAGATTGAAAAAAGAAGTGGG
CTTGACATCTATTCTtgctttcaactttttcagattGACACAGATCCAAA
ATGATGATAAACATTTTCGTAAAAGAAAAGATACCTTGGTATAACAGAAG
AAGAAgtggcaaaaaaagaaaacaaagaatggATAATCTAACAAGAAAAC
TGGTCAACAAGCATGCAGCTACATCCCCTGAAGGCAAAAGATATTCTCTC
ATAGACATGTACATGAAaccaaatcaaaactttatcgTGTATATAGTACC
ATTCAAAGATTGATGTCATTGTTATATTAGTGTTTAAGCCTTAgatatta
caaaaaaacattgtAAATACAATCATCCAATCATCCACGGTAAAAAGTGT
AAATTTTAAAGCATATTTGGTTCGAATTTCTAAAACACTATTCTAAAATA
CAAAACATAGCAATTCTCTCGCAAAGTTGATCAGAAGAAAacagaaac

Coding sequence (CDS) from alignment at sc0000005_pilon:961256..964653+

>MSTRG.1020.1.p1 ID=MSTRG.1020.1.p1|Name=MSTRG.1020.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6321bp|location=Sequence derived from alignment at sc0000005_pilon:961256..964653+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATAGCCGAAGAGGTCGAACAGGGTCAAATCCCGAAATCACCTCCTC
CTTGACCGAAGATGATTTGATCGAACGCTTACGTGCGATGACTATCCCTG
AGGTATCTGATTTACAACAGAAAAATGACTCGTTTATCTTTGACGATATG
TCACAAAGCGGTGATCAAACAGACGGGACATCGAGTCTCAAAAATGATAA
ACCAACGCGGTTGCTATGCGATCGACCTTCTATACAATCACCAGACTTCG
AAGAACTGGAAGCTTCAGCGGgaactgttcacaaaaacattCTTCATTTA
CGGCAAGATTTAGACAACCTTCGAAAAGTTCATCAAGATTTTTCCAGGTC
TTTCAAAGCAGACATGCAAAAGAAATTACTTGAGTTCAGAAAGAAAGCAT
CAAGGTTGGATGAACACCTCCAAAACAAGCTAGACAacaacaataatcac
tttttcGCCAAAGAGTTACCAGTTCGAGAACAGAGATTCAAATTGACTTC
AGACCAAACACATTATCGGACCTTGTTGGCTGATTCAGAAAAACAATTAT
CTGAACTAGAAATTCATATCGAGTTGATTCGACTGAACGTGGTGCAAACA
AAACGAATCGAACATCCATCCCAGATTGAGGATTTTCGTGATGAGTTAAC
AGACGTAGTCAAGAATATCAGCATTGCCAAAAAGAAATATCACGGTTTGG
AAGAGACGCTGAAACAGGTCATTCATGCTGAGCTAGAAGTCATACAAAGA
GAGGAACAGTTTCGGAAAGAAGAGCCAAAGAGGATCGAAAATATGATCAA
AAGGTGTCGTAAAATATCTTCCACCGTCGAAACTTTGCAGAAattGACAC
AGATCCAAAATGATGATAAACATTTTCGTAAAAGAAAAGATACCTTGGTA
TAAATGTATAGCCGAAGAGGTCGAACAGGGTCAAATCCCGAAATCACCTC
CTCCTTGACCGAAGATGATTTGATCGAACGCTTACGTGCGATGACTATCC
CTGAGGTATCTGATTTACAACAGAAAAATGACTCGTTTATCTTTGACGAT
ATGTCACAAAGCGGTGATCAAACAGACGGGACATCGAGTCTCAAAAATGA
TAAACCAACGCGGTTGCTATGCGATCGACCTTCTATACAATCACCAGACT
TCGAAGAACTGGAAGCTTCAGCGGgaactgttcacaaaaacattCTTCAT
TTACGGCAAGATTTAGACAACCTTCGAAAAGTTCATCAAGATTTTTCCAG
GTCTTTCAAAGCAGACATGCAAAAGAAATTACTTGAGTTCAGAAAGAAAG
CATCAAGGTTGGATGAACACCTCCAAAACAAGCTAGACAacaacaataat
cactttttcGCCAAAGAGTTACCAGTTCGAGAACAGAGATTCAAATTGAC
TTCAGACCAAACACATTATCGGACCTTGTTGGCTGATTCAGAAAAACAAT
TATCTGAACTAGAAATTCATATCGAGTTGATTCGACTGAACGTGGTGCAA
ACAAAACGAATCGAACATCCATCCCAGATTGAGGATTTTCGTGATGAGTT
AACAGACGTAGTCAAGAATATCAGCATTGCCAAAAAGAAATATCACGGTT
TGGAAGAGACGCTGAAACAGGTCATTCATGCTGAGCTAGAAGTCATACAA
AGAGAGGAACAGTTTCGGAAAGAAGAGCCAAAGAGGATCGAAAATATGAT
CAAAAGGTGTCGTAAAATATCTTCCACCGTCGAAACTTTGCAGAAattGA
CACAGATCCAAAATGATGATAAACATTTTCGTAAAAGAAAAGATACCTTG
GTATAAATGTATAGCCGAAGAGGTCGAACAGGGTCAAATCCCGAAATCAC
CTCCTCCTTGACCGAAGATGATTTGATCGAACGCTTACGTGCGATGACTA
TCCCTGAGGTATCTGATTTACAACAGAAAAATGACTCGTTTATCTTTGAC
GATATGTCACAAAGCGGTGATCAAACAGACGGGACATCGAGTCTCAAAAA
TGATAAACCAACGCGGTTGCTATGCGATCGACCTTCTATACAATCACCAG
ACTTCGAAGAACTGGAAGCTTCAGCGGgaactgttcacaaaaacattCTT
CATTTACGGCAAGATTTAGACAACCTTCGAAAAGTTCATCAAGATTTTTC
CAGGTCTTTCAAAGCAGACATGCAAAAGAAATTACTTGAGTTCAGAAAGA
AAGCATCAAGGTTGGATGAACACCTCCAAAACAAGCTAGACAacaacaat
aatcactttttcGCCAAAGAGTTACCAGTTCGAGAACAGAGATTCAAATT
GACTTCAGACCAAACACATTATCGGACCTTGTTGGCTGATTCAGAAAAAC
AATTATCTGAACTAGAAATTCATATCGAGTTGATTCGACTGAACGTGGTG
CAAACAAAACGAATCGAACATCCATCCCAGATTGAGGATTTTCGTGATGA
GTTAACAGACGTAGTCAAGAATATCAGCATTGCCAAAAAGAAATATCACG
GTTTGGAAGAGACGCTGAAACAGGTCATTCATGCTGAGCTAGAAGTCATA
CAAAGAGAGGAACAGTTTCGGAAAGAAGAGCCAAAGAGGATCGAAAATAT
GATCAAAAGGTGTCGTAAAATATCTTCCACCGTCGAAACTTTGCAGAAat
tGACACAGATCCAAAATGATGATAAACATTTTCGTAAAAGAAAAGATACC
TTGGTATAAATGTATAGCCGAAGAGGTCGAACAGGGTCAAATCCCGAAAT
CACCTCCTCCTTGACCGAAGATGATTTGATCGAACGCTTACGTGCGATGA
CTATCCCTGAGGTATCTGATTTACAACAGAAAAATGACTCGTTTATCTTT
GACGATATGTCACAAAGCGGTGATCAAACAGACGGGACATCGAGTCTCAA
AAATGATAAACCAACGCGGTTGCTATGCGATCGACCTTCTATACAATCAC
CAGACTTCGAAGAACTGGAAGCTTCAGCGGgaactgttcacaaaaacatt
CTTCATTTACGGCAAGATTTAGACAACCTTCGAAAAGTTCATCAAGATTT
TTCCAGGTCTTTCAAAGCAGACATGCAAAAGAAATTACTTGAGTTCAGAA
AGAAAGCATCAAGGTTGGATGAACACCTCCAAAACAAGCTAGACAacaac
aataatcactttttcGCCAAAGAGTTACCAGTTCGAGAACAGAGATTCAA
ATTGACTTCAGACCAAACACATTATCGGACCTTGTTGGCTGATTCAGAAA
AACAATTATCTGAACTAGAAATTCATATCGAGTTGATTCGACTGAACGTG
GTGCAAACAAAACGAATCGAACATCCATCCCAGATTGAGGATTTTCGTGA
TGAGTTAACAGACGTAGTCAAGAATATCAGCATTGCCAAAAAGAAATATC
ACGGTTTGGAAGAGACGCTGAAACAGGTCATTCATGCTGAGCTAGAAGTC
ATACAAAGAGAGGAACAGTTTCGGAAAGAAGAGCCAAAGAGGATCGAAAA
TATGATCAAAAGGTGTCGTAAAATATCTTCCACCGTCGAAACTTTGCAGA
AattGACACAGATCCAAAATGATGATAAACATTTTCGTAAAAGAAAAGAT
ACCTTGGTATAAATGTATAGCCGAAGAGGTCGAACAGGGTCAAATCCCGA
AATCACCTCCTCCTTGACCGAAGATGATTTGATCGAACGCTTACGTGCGA
TGACTATCCCTGAGGTATCTGATTTACAACAGAAAAATGACTCGTTTATC
TTTGACGATATGTCACAAAGCGGTGATCAAACAGACGGGACATCGAGTCT
CAAAAATGATAAACCAACGCGGTTGCTATGCGATCGACCTTCTATACAAT
CACCAGACTTCGAAGAACTGGAAGCTTCAGCGGgaactgttcacaaaaac
attCTTCATTTACGGCAAGATTTAGACAACCTTCGAAAAGTTCATCAAGA
TTTTTCCAGGTCTTTCAAAGCAGACATGCAAAAGAAATTACTTGAGTTCA
GAAAGAAAGCATCAAGGTTGGATGAACACCTCCAAAACAAGCTAGACAac
aacaataatcactttttcGCCAAAGAGTTACCAGTTCGAGAACAGAGATT
CAAATTGACTTCAGACCAAACACATTATCGGACCTTGTTGGCTGATTCAG
AAAAACAATTATCTGAACTAGAAATTCATATCGAGTTGATTCGACTGAAC
GTGGTGCAAACAAAACGAATCGAACATCCATCCCAGATTGAGGATTTTCG
TGATGAGTTAACAGACGTAGTCAAGAATATCAGCATTGCCAAAAAGAAAT
ATCACGGTTTGGAAGAGACGCTGAAACAGGTCATTCATGCTGAGCTAGAA
GTCATACAAAGAGAGGAACAGTTTCGGAAAGAAGAGCCAAAGAGGATCGA
AAATATGATCAAAAGGTGTCGTAAAATATCTTCCACCGTCGAAACTTTGC
AGAAattGACACAGATCCAAAATGATGATAAACATTTTCGTAAAAGAAAA
GATACCTTGGTATAAATGTATAGCCGAAGAGGTCGAACAGGGTCAAATCC
CGAAATCACCTCCTCCTTGACCGAAGATGATTTGATCGAACGCTTACGTG
CGATGACTATCCCTGAGGTATCTGATTTACAACAGAAAAATGACTCGTTT
ATCTTTGACGATATGTCACAAAGCGGTGATCAAACAGACGGGACATCGAG
TCTCAAAAATGATAAACCAACGCGGTTGCTATGCGATCGACCTTCTATAC
AATCACCAGACTTCGAAGAACTGGAAGCTTCAGCGGgaactgttcacaaa
aacattCTTCATTTACGGCAAGATTTAGACAACCTTCGAAAAGTTCATCA
AGATTTTTCCAGGTCTTTCAAAGCAGACATGCAAAAGAAATTACTTGAGT
TCAGAAAGAAAGCATCAAGGTTGGATGAACACCTCCAAAACAAGCTAGAC
AacaacaataatcactttttcGCCAAAGAGTTACCAGTTCGAGAACAGAG
ATTCAAATTGACTTCAGACCAAACACATTATCGGACCTTGTTGGCTGATT
CAGAAAAACAATTATCTGAACTAGAAATTCATATCGAGTTGATTCGACTG
AACGTGGTGCAAACAAAACGAATCGAACATCCATCCCAGATTGAGGATTT
TCGTGATGAGTTAACAGACGTAGTCAAGAATATCAGCATTGCCAAAAAGA
AATATCACGGTTTGGAAGAGACGCTGAAACAGGTCATTCATGCTGAGCTA
GAAGTCATACAAAGAGAGGAACAGTTTCGGAAAGAAGAGCCAAAGAGGAT
CGAAAATATGATCAAAAGGTGTCGTAAAATATCTTCCACCGTCGAAACTT
TGCAGAAattGACACAGATCCAAAATGATGATAAACATTTTCGTAAAAGA
AAAGATACCTTGGTATAAATGTATAGCCGAAGAGGTCGAACAGGGTCAAA
TCCCGAAATCACCTCCTCCTTGACCGAAGATGATTTGATCGAACGCTTAC
GTGCGATGACTATCCCTGAGGTATCTGATTTACAACAGAAAAATGACTCG
TTTATCTTTGACGATATGTCACAAAGCGGTGATCAAACAGACGGGACATC
GAGTCTCAAAAATGATAAACCAACGCGGTTGCTATGCGATCGACCTTCTA
TACAATCACCAGACTTCGAAGAACTGGAAGCTTCAGCGGgaactgttcac
aaaaacattCTTCATTTACGGCAAGATTTAGACAACCTTCGAAAAGTTCA
TCAAGATTTTTCCAGGTCTTTCAAAGCAGACATGCAAAAGAAATTACTTG
AGTTCAGAAAGAAAGCATCAAGGTTGGATGAACACCTCCAAAACAAGCTA
GACAacaacaataatcactttttcGCCAAAGAGTTACCAGTTCGAGAACA
GAGATTCAAATTGACTTCAGACCAAACACATTATCGGACCTTGTTGGCTG
ATTCAGAAAAACAATTATCTGAACTAGAAATTCATATCGAGTTGATTCGA
CTGAACGTGGTGCAAACAAAACGAATCGAACATCCATCCCAGATTGAGGA
TTTTCGTGATGAGTTAACAGACGTAGTCAAGAATATCAGCATTGCCAAAA
AGAAATATCACGGTTTGGAAGAGACGCTGAAACAGGTCATTCATGCTGAG
CTAGAAGTCATACAAAGAGAGGAACAGTTTCGGAAAGAAGAGCCAAAGAG
GATCGAAAATATGATCAAAAGGTGTCGTAAAATATCTTCCACCGTCGAAA
CTTTGCAGAAattGACACAGATCCAAAATGATGATAAACATTTTCGTAAA
AGAAAAGATACCTTGGTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1020MSTRG.1020Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1020.1.p1MSTRG.1020.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1020.1.p1.exon1MSTRG.1020.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1020.1.p1.exon2MSTRG.1020.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1020.1.p1.exon3MSTRG.1020.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1020.1.p1.exon4MSTRG.1020.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1020.1.p1.exon5MSTRG.1020.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1020.1.p1.exon6MSTRG.1020.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1020.1.p1.exon7MSTRG.1020.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005_pilongenomesc0000005_pilon:961256..964653 +