MSTRG.10123.1.p1 (mRNA) -

Overview


Name	MSTRG.10123.1.p1
Unique Name	MSTRG.10123.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000069_pilon:1074624..1081846+
coding sequence from alignment at sc0000069_pilon:1074624..1081846+

mRNA from alignment at sc0000069_pilon:1074624..1081846+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.10123.1.p1 ID=MSTRG.10123.1.p1|Name=MSTRG.10123.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7223bp|location=Sequence derived from alignment at sc0000069_pilon:1074624..1081846+ (Clytia hemisphaerica_ch_hm2_pilon)
TAGGGGATTTTCGGTCGGACTGCCGGGCGTTTACGCCAAAAGTTTCGTGA
AGTTTTAATATGAAGCTGATCGCCATTCTTTTACATTCAATCCACCGACA
GGCAGGAACTTCGTAGACCTGTATCAAAAATCTCCCAAGATTTTCACGAT
CCTTCGTTCAATATAATCTAAAATGGGTCCAAAATTCGATCCCAATGCTA
TTTCCTATGGTAAGTCtgttatttttttgattatCCTTCTCAAACCGAGC
ACAAATGAACATGAAATTTATGGTCTATTTTACCAGAAATGTTTGCAGAA
AAGTAGTATTGATTAGTCCAGGatctggagctcaactactttttgccttt
gataatcTGATAGTTGAAAAAGTAGAGATTTCCTATTGCAGCGGCATCAA
ATCagaaagcaaaaatatcatCTGGAAGATTTATCATAGGGACAATTTTC
TGACAAAGTATTTTTTCCTTCAGTTTGCTTGAGAGCTGTTGGTGGAGAAG
TTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTCCTCTTGGTTTGGTA
AGATATTTTGAAGCCTATTTTTCTGATTGGACTATTCCAGAAATAATCTG
TGTTGCATTGGAAACAATTCAGTTAGGGGTCATTCATAAATCAATTTTAG
GttaaaaaaacgtcaattgaaGTTTTTAAAGCTGTTCCACCCACCCATAC
CTTTAAACATGTGTGTTTGGTTTAGGAACGCAAAAATTTGTAACCTAAAG
TAAAGTCCGAAcccgatcgaacagctatcgttcgattttgttcaGTAAAG
TTTGATGGTTTGATAACGAAAATTGGTTCGATAGGTTTCCGTTGACACTG
CCTattctactaattaaagtaaatgagataagaagAGGCAAAACCTTAAA
GGGGAAGTTAAGTAATTTCTAGGGTACCCATTTTTTGCTGTTATCATCAT
TATATGACAATATCATGTGCCTCAGGTTACTTTTTATTCGTTCGAAACAC
TTTTTTCTATGAGATATAGCTCCCTCTTTTTGCAATAAAAGTGAGTTTTT
AAAGAGAACGCGTTTTTTAAAGAGGAATGGCACGAGCATCTGTTCTGACG
TAATTTGCTCCAAAAGacgaacaaaaatttttcttttaaacaaaatctgt
ACTGATAAACAGTGCTTTGTAAAGAGATTCTGCTAGACCTGGCTAGACAt
ttattcgtttttttcaagatttcttcaCGTTTCTTCGATCCTATACTTTC
TCATTCTTTCTACCTACTAGATTAGTAAGTCCTTGACCTTTTGTgataat
tttagtttgatgaaGCAACCGTAAATGCTAGATTTGTAGATGCGGAAAAA
GCTTCGGCTCTCCAGAGGAAAATGTGTCCACGAATAGTCCTCATCCCGAT
TGGGTAAATCGCTAATTCCACTTGAATTTTGTGGCTGAAAATGATtctat
cgagaaaaaaaaagaattaacatATCCCATTTAAAAGTCTCttattttga
ctttgactttactGTGCGAGATTCAAAAGTTCCCTAGAAGATTCTCCTTC
CTTTACTTCtcctagaatttagaaaaatgtaTATTTAACCCAGTTGCTTT
CAGACTTCAATTTCCCACTGGATTAGCTAGCCTTTAGAAAAACCTACTGG
TAAAAACAAGTTCTAGACTTTAGATATAGGGCGCACAACGTACGTTAGCA
TTAACTCACTAACGTTGACTTGTCATGAAATAGGAATTatttaacaacat
ttttctctttaaaagaGCGAGGAATGGtctaaatacaatttttatatcTC
TTGTCTTTCGTATTTCATAACTATTACTTTACTTACGGCCTCTTCACATG
GAAAGAAGTCCAAAACTTACTAAGCTTACTGGACCTTACTGAAAACACAA
AGATTCTTTCACATACCTAGATATTGTGGCTACCattgaatttctattga
aaaaaacaaggtttttggATTCTAGTATGGTTAGACCGTATAAAACATCA
AGTACtgtaatgaaatattgaaaaatcaggggttgaaaaaagttttgatc
agTTATGATACAGCTCTTTTCTACTacaaagtcgtttaaaaaagattctt
tctggagcaaatgacgtcacacgaaagagagattagaagaaattttaaac
aaaaagggGGTCTCTTAAACACCGGTTTTTGCGTCTAAAAGAGTATGTGT
TTATGAAAGATATATCGATGTTTAGACATTGAAGTTGAGATTTTCGTGAA
TTCTATGATGTTAGGATTGGTTTTCAGGGGAAAAACATATACCTTAAAAA
TCACTTAACTTCCCCTttaaaatcaaccaaaattcataacctagtccaaa
gcaaaagatgtGCTTTTCTATCTTGCcactagcctgggtatccagactca
aaatttcagaaaaaaaattcttacctcaacatacaaagtttctaaaattt
tagagtctggtgcaactaaaaaagttgggtacagtttgtttgatactgcc
tgtgagtgaacccttgtcgacagactatcaaaactttgtaaacccaggca
gacacacataattaacttactataaaacctcttttacaaactcaaaaaac
tttcaaaactactttaagctacatcaaaacatcagccacatttataaagg
ctcttttccagcggccattttgtttagaaatgaaactgcgttttcatttt
catttgtttatctttttttgcaaggtcagctttttccataacttatgcgc
gcgcatcgaaaaatattacaaaccccgcgaaaattctgctcagtgccTGG
GCGCgaactgaccaattagagacactcgcatatgcagggatagatatccc
tgcagacgagttacttcgaccagaccgtaaacctgagacaaaatataaaa
aaaactagacggtgaaatagtttacggtctggatatccaggctatcttgc
caccatcttgttttagaatgagaattattttcgtgtcatttgcgaagaaa
aataaatcttgagcacaaaaacttttttaaacaattttttacaccaaaaa
aaCCAAATAACTTTCATAGACTTACCTTTCCCAAACATTGAAAAAGCCCC
TACtcattaaagtaaatgagataataTAAGGTAAAaccttaaattaaaaa
aaaacattaacttttgaaatctgctgTTGTACACGGAAGGGCCTTTTACA
ACATCATCTATTCTGCATGTAGACTTTGCAACTCGTGTGTGAAGTTTGTT
TTAGGGCATTACAGGCCTTTGCCCATCGAGGATTCAATATTTTACATGTT
AGTCCCTGTATCCAACTTGGTTacaatacaacaacatataataataacat
taataacaataacatttgattggctgtaTTTTCTAATTCCATAAGGAATa
tcggaaattcaaactcttagTAGCCCAAaccatcatcatccttcgaccta
ggtccgaatggacctaggtcggaaacaaacaataaccctcCCTCCACAGC
TCTCGATCAGCCATTGCAGTGCCCAGTTCCTCAATCTCTAGCCCTGTTTC
TCGTTTCAAAGTATCAAGAAAAGTGCGCTTTCTCGAGCGCCTAGTGCCCG
CAGAACACCAAAGTAAGATCTCAGACACCATTTCGTTTTTCGCACTGAAA
CAGTGACCTGAGAAAGAGAGCATCCTGCTAGTCAGGACAGAGGAAATTCT
TGGGAGTCCATGATATATCTCTTGAAGGGTTGGGTGGTTGCGCCAATCAA
GATTCTggactcttttcaaaagatttgtatagcagccatcaaggctcttc
agcatggtttttgtcatggtccaagtctccgagccatatagaagaatggg
ctcgacaagacttctaaaagtttgaagtttaagagcgttagacaaattag
agtgccatatcttgtttaacttattacaagctttccaagctagacctttc
ctaattttaaaatcgttttcagAGCTGTTAATATGAGAGCCAAGATATTT
AAAATCCTTCACAAGTTTGATATTGACACCATTCTTGGAAGTTAAAGGGA
GAACAATCCCAGAGGAGctgataaattcagtttttccagcattgcaATAA
AGACCGACTTGACTGGCCGAAGTTTCAAGTGAGTGAAGAAGACTTTCAAG
ATCAAACCATGCTTAATTTCGTCATCAGTATTTAAAAAAGGATTTGAACA
ACACTGTATGGCCCAAACATTTTTGGGTTGTCTTTGGGCCAAAATAGTTC
AACATTCTTTTGGCCTGAATActaatcaaaattttggatttccGTCAAAC
CTGGCCTGAGGTTCTGGACTTTTTCAACTTAGAAATCACCAATTGGTCTG
AAAAGTTTGTAGAAGATCTATGCTaggatttcttcttttataaagaTCTT
TAAATCTCTTGTGATggaatttaccattttttttatcctttttagtCTCC
aaaaaaaGTTGGTGATGACATCGCTAAAAACACTGCTGACTGGAAGGGTC
TGAAAATCACTGTCAAACTAACTATCCAAAACAGACAAGCCAAAATTTCA
GTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCCTTGAAGGAACCACC
ACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGATGGAAACCTCACCA
TGGATAACATCTACGATATTGCTCGTGAAATGAGAGAACGATCGCTCGCC
AAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGAACTGCCCAAAGTGT
TGGATGCACTATTGATGGAGATGACCCACAttcaattattgaaaaaatca
acGATGGTGAAATTGAATGCCCAGTAAGTGTCATGTTTAGGTATGAGTTT
AAATCCTTTGCAAAACCCAACCTTACGTCCACGGCGTGCATTGGGGTCAA
CGTAGATGGAATCATCCCTCCCAGAGTTACAATAAACATTGTCACTCGAT
GAGAAAGGTCCAGCTATctataaaaactcaaaaagaactCTGTTCATTCT
GGTTCATTTACACAGCAAACTTTTCTCGTCGAAACTGGGGGTTGGTCGTT
TCCACCGGCAAACAGGGCTCTGGTACTTTTTTCTTAGTTTATCATATTTC
TTAGCTCAAGTTATAAAAGAATGGAATGTCTGAAAGATCTATCCTATCAA
GTGAAATTCATCATTCATAAGGCATACAAGCTTCTGTGAGCATATTTTGT
TAGAGAAAcaatttccaaatatttgtCACCTTTCCCCTTGTATGCAGAGA
ATAAAAATGGGGTATCTTACATGGTGAGGCCTGTTGGCACATAagaacgt
aagaatacttcagatggtgataaaagcatgaaatttggcacagatgatcc
ttagagggtctaaaactgaATCATAAACAGTAACACTAAATTttgccacc
tgccagatgacgtcatcaggtggctgggccaaaattcattttttggaggt
tgaaagttttgtgatggtACGTCATCTCAAGCCTTTAAAACCTTgtaatt
ttggaacaaattgaccaaatttcatgttttatagaTGAATTcgtatcaaa
attcattgctctTTCTGATTCTGATGTTTAAATTATATTAAAAGCTCTAA
ATTCTACGGAATACTAAAACTTGGATTTTGCGGTTTACATAGCAAATTAA
GGCAGCATTTTTCCTTCAGGAACACAGTGCAAaaccaactaatttttttg
gatgttttaagccttcctatgtCGTTTAGACCCAAGAATTAGaaggaact
tcgatttttgacatGGATTCGTGTATAAAACATCAAACTTGGTCATCTAG
TTCCgccgttattacgggattttaggttttgcctggaaaggcttatgagg
gcgtcatcacaaaactttcaataGATGATATCAGCTTTCCGatttctccc
cgaatgattacccatgatgcattgcgcaaaaaatttCACGGGCAATATTG
ACTTTCCGTGAATTTTTCGCGCATTGCATCATGCGTAATCAttcggaaaa
tttgaaaagccAATATTGTCTAtttccataacttttgataggaagatttt
taaggcatgttttataccaggggggtcggtagtaaaatcttagacttaat
gacgtttactacggtggtggtgtgacgaaaaattgaaaaaaacttttact
acccagggtagttaaatattcaaatgggtggtatctatgtgttaaatgtt
gaaaaaatttactacgtgggtagttaaaactggtaaaattagcaaatttt
tgctgtttttgtaattcttttaattttttagatgacttttatgaaaaatc
tgaaaatttttataatttgaaaaaaatttctgttggaaagttgtttgctg
taatcaaaaaattctcgaatttttttgtcaatataaaaaacacttgaatt
ctaagggcaaaacattaatttttgcactaagtgaaaaatgtgtcacagaa
ataatcattttttagcttttttaaatcagtccgaaaagcaaccaaaaaat
aggtggtctctatgacaaattgtcccaaaaacttttactaccagggtagt
aaaatacttcttccaagagtctgggtggtggtatgtaaaaattcgtaccg
acccccccctgtttatacctcaattttcatcagcatttcatgctctttcc
gctgaaaCCATCATATTTcgaatattttaaaaaaaataaatttttgccca
gccacctgatgacgtcatctggcaggtggccaggtaggaaaatttggtgt
tactgtttaaaatcaagttttagaccctctaaggatcatccgTGCCAAAt
ttagtatttttgtgctaacagacatTACTATACAATATGCTTACTACATG
CATACTAAATGAACGATTCCGCAGATAAGCATTTAAAATCTGATTTAAGT
TTCTTCCTTTTCAGTACATTTATAGTTCTCTTATCATTTAGAAATTCCTA
ATGTTACCAAATTTGAGAGGCGAAAATCCAGTTTTACAGCTCACATTAGT
TGGTTGTCTGCCTTGGAGTATTTACAATGAGTACTCTACTGAAAGatatt
aatgttttttcttattctttcaGGATGCATGAAGCGAGAATATATGGTgg
tagaaaaacaaacaaatcttCTCCATTCTTTATTTATCCTTGACCCTGCT
TGAACTAGAATTAGTCCATCAAATATAAATTTGCTAATCTTTAGGTTTAA
TTCGGGtgtgaaaacaatgaaaa

Coding sequence (CDS) from alignment at sc0000069_pilon:1074624..1081846+

>MSTRG.10123.1.p1 ID=MSTRG.10123.1.p1|Name=MSTRG.10123.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000069_pilon:1074624..1081846+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTCCAAAATTCGATCCCAATGCTATTTCCTATGTTTGCTTGAGAGC
TGTTGGTGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTC
CTCTTGGTTTGtCTCCaaaaaaaGTTGGTGATGACATCGCTAAAAACACT
GCTGACTGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAG
ACAAGCCAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAG
CCTTGAAGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACAT
GATGGAAACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAG
AGAACGATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAG
GAACTGCCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACAttca
attattgaaaaaatcaacGATGGTGAAATTGAATGCCCAGATGCATGAAT
GGGTCCAAAATTCGATCCCAATGCTATTTCCTATGTTTGCTTGAGAGCTG
TTGGTGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTCCT
CTTGGTTTGtCTCCaaaaaaaGTTGGTGATGACATCGCTAAAAACACTGC
TGACTGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAGAC
AAGCCAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCC
TTGAAGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGA
TGGAAACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAGAG
AACGATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGA
ACTGCCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACAttcaat
tattgaaaaaatcaacGATGGTGAAATTGAATGCCCAGATGCATGAATGG
GTCCAAAATTCGATCCCAATGCTATTTCCTATGTTTGCTTGAGAGCTGTT
GGTGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTCCTCT
TGGTTTGtCTCCaaaaaaaGTTGGTGATGACATCGCTAAAAACACTGCTG
ACTGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAGACAA
GCCAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCCTT
GAAGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGATG
GAAACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAGAGAA
CGATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGAAC
TGCCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACAttcaatta
ttgaaaaaatcaacGATGGTGAAATTGAATGCCCAGATGCATGAATGGGT
CCAAAATTCGATCCCAATGCTATTTCCTATGTTTGCTTGAGAGCTGTTGG
TGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTCCTCTTG
GTTTGtCTCCaaaaaaaGTTGGTGATGACATCGCTAAAAACACTGCTGAC
TGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAGACAAGC
CAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCCTTGA
AGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGATGGA
AACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAGAGAACG
ATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGAACTG
CCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACAttcaattatt
gaaaaaatcaacGATGGTGAAATTGAATGCCCAGATGCATGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.10123	MSTRG.10123	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.10123.1.p1	MSTRG.10123.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.10123.1.p1.exon1	MSTRG.10123.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10123.1.p1.exon2	MSTRG.10123.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10123.1.p1.exon3	MSTRG.10123.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.10123.1.p1.exon4	MSTRG.10123.1.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000069_pilon	genome	sc0000069_pilon:1074624..1081846 +

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MSTRG.10123.1.p1 (mRNA) -