MSTRG.1009.1.p1 (mRNA) -

Overview
NameMSTRG.1009.1.p1
Unique NameMSTRG.1009.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:700107..704023-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1009.1.p1 ID=MSTRG.1009.1.p1|Name=MSTRG.1009.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3917bp|location=Sequence derived from alignment at sc0000005_pilon:700107..704023- (Clytia hemisphaerica_ch_hm2_pilon)
GTTTTTTCATGACAAGGAGCATCTGATTTCTTACATCTTTCTTTGTTTGT
TACTTTTGATTTTTTGAAGCTGCACATGGGATACGATTCTTTTGAAAGAG
TTCAATATAATCAGAATGGGAAAGAAGATGATGATATTCAAAAGTAAGCT
TTGTTTAAAAGTTTTCAGTATCTTCCACACGATTTTTGATTAACAGTAAC
ACAGATTCTCGGTTGTATGTGAGGTTTAACATTTACCGTCAGTTATAAAA
CCATAGCTTTGACGTGCACTACATCTTTTCACTACATTTCTTATGTGCTA
GGATAGAGTAGAAGTATTCCATTCTATCAACCGTCAAACCAAATTCAAAC
TCAGTCCCTAGTTCATTTCTTATGATTCTGATAGCGCTTACATTTTAATC
ACATCTTTCAGGGGACCATCAGTAAAACCAAAGTGGTGAAAGTTGCTTTG
AGTATAACATTTTCGTCTAACAAAGGTTTTAACGCTCTAACTTGAAGACA
ATTTTTTTGAAAAAGTTTTTTCCTTCTTCAGGTTTCTATTACTTGGTAGT
GCTGAGTGTGTTGGTGCAACAAGCGAAATGCTTCGACGAATGTTCGCCAG
AGAATTACAAAACTTTGGATGAAGAATGGAGATACCATGAATACACTTCA
ATGAAGTTCAACAATCAAGATGACACTCAATTAAAAGAAGGCTGGTATCG
ATTCACAAACAAAGCTTTCAGAATGCTGGAGAAGGATGAAATGTTCTCTG
ATTTTGTTGTCAAGAATAGGGTAAGTCTTGCAAGATTTGTTTGTTTTGAT
TTGCAGATTTCCAATGATATTCACTTTTTCAGAGTTCTTACTGGATAACC
ATACTAGACGAATGATATTAAACGTCGAAAAGTTTCCTTACCAGTTAAAC
AGTCAGTAGTTTTCGGTAATTTAATATTATTACTTTATTTCGTAGAAAGA
ATTCAGACCAAGTGGAAGCGAGCCTTTCCAGAACTTCCGCTTCTCACCTT
TTCCTCCGAGACTCTACACCAGGACCACTCCGCTGTACGTGGTGAGCGGA
ATACATCCGGACATCAGCGGAGGTACGTTTACTTTTGAAATACTAATAGA
TTTTGTTGGTCGAGAATCATTCTAGATTCCTTCATTAGAGTTTCAGGATG
AGATAAATGATATACTATATTTGAGGTTTGACCTAAGGAGCGATGGAGCT
GAAGCAACCATCGTACATTTAACTTAGATAGCTTCAAGAGGCTTGCGAAT
ACACCTTCGCATAATACTACGATTTTCTATTACAGATCTGGTCAAGACTG
AGGCTATCGAATGTTACTATGAGTCGCTGTTGAACAGCTATGGGCCTACA
CCTCAAAATGGTGCAATGTGTAGCCGAGAATCACCAGATAGAAACCAGTG
CAGTTACAAAAGGTTCTGTGTTAAAAGTGCAACAGTTGAGATCAAAATCC
GACATTGTGGATCGTTCTATGTTTATCATTTGAAACCTGTCCGAAAAATC
AACAGACATAAATTTTTCGAGAATCCGAAGAGTGGATTGTATTGTGGGAC
CAAAAAGACAAAGATGGTTAAACCTTCAGGTAAATGGAATTCTTCAAAAA
ATCTGGTCAGAAAGAATCACGATGAGGTGAAATAAACGTTGAGGTCGGAC
AACGGACGATTACCAAAGAAATTTATTGAACTGAACTTTTCAATTATAAG
TGATTTTGCAAGATCTATGCTACATGTTTTTTTATCAGAATATACTCTGT
AAGAATATTCATGATGAAATTGGCCAAAACAATAAGAATATGCTAAGAAT
ATCACCATCATGGAATTTGGCATTTGAGAAAATTCCATTTCTAGAGGCAT
TTCAACTGTAAAATTTGCCAATTATCTCCCATTAAGAAGGCTCAAAACTT
TAACGTTTAATGTTATTTTATTCATCAGGTATGTGGTACATCTAGGACTT
TCCTCAAAAAGTTAAGAATAGAAAAATACTGTTTTTATAAAAAAGTGTAT
ACGGACAAAAAATAGATATTTGCTTGACCATCTTTTTTCTCCTTTCCAAC
CCTTCAGCTCCTTGTAAATGTCAACTATCTGAAGAGAATGAAGAAATCCT
CAAATCTACAAAATGCAACTTAAAAGATGGTAAGGACATTTGATTACTCA
TCGATTATCTTACGACGTGACATCAAACCAAATCTTTTTCAATGATATAG
AGGCCCGGGGGGGCACTAGGTTTGCGGACTGACGGTATGTGCGGGCCAAA
AATTGGCTTTTAAAATTGCACCCTTACAGTGCAGCAAAAATCAGTGAAAA
TCATACCCTTAGAGTGCATTTTCCCCCAAATTTTCGATCCCTTTCGTGCA
AAAAATGGTCAAAATTCTAGCATTTTTGGTCAAAATATCTAGATTTTTCA
AGAATTTTCTGAAATTTCTACCCTTACAGTGCATCTCTAGTTTTTCCGAC
CCTTACAGTGCATTTTAAACATATTGGAAAAGGTACCCTTAGGACCCGCA
CATACCCGTCGGTCCTTTTGCCCAGCTGCCCCCCCCCCCGGGTATAGAGG
TACTTTAAAAATCTGGCTGAGAATTCACCCTCTTAAAGGTTTGGTTTTTA
AATAAGAGTGACATTGTTTGCTTACTCATCAATTTTAATTCACTAGCTTT
TACACTCTTTAGATTCTTCGCTCTTAATTTTATGATGATACTCAAGGAAC
CTCTTTTACCTCTGTCCATATCTTAAATATCCCAATATCCATAATTCTCA
AAGAAAATGAAAATTGCGTATACTTTGAATTTTTTTTAAATAAAAGTAGT
ATTTTAGTGTTATAAAAGCTGCCTACCTTATCGGCCAAAACTTAGTCGGC
CCTAGGTGACTAAACTTTGGCTTAGTGACTAAAATTAGGGCCGACTAAAA
ATTTAGGCCAAATTAAAAGTTTATAATTAATCTTTCCTTATTTTCAAGTA
TTTTAAGCTTTCTCCTATTTTCCATCTGCTTGTAAATTTAGAAATGGCCC
AAATTTTCAGTCTGTCTTAATTATTAGTCGGCCCTTAGTGACTAAATTTT
GACGAGGTGACTATAATTAGGGCCGACTAAGTTTTGGCCGATTAGGTATG
TAGAAAATATTAAACATTTTGCGGGAGACCTGTGACCGTTAGAGATCTCT
GAGATGATATTTCCTTTATTTTTGGTTCAATAGAACTGGACGAGGAAGGA
GTGAAGGCATTCATTCGATGTTTATTTGACGAGCAAACGGAACTGACACT
TGCAGACCAACAAAGTGCGACTTGTGTGAATAAACTTTGGAAGGCTGAAC
ATGGACAAATGCATGGCCAAACATACCCGATATCAGGTGTCAAGAAACAA
CAAACGAAATGCTATAATTTGAGACGCGAATTTAAAAATGCAATAAATAT
GAAGTTTGAAGTCATGAAACCATTGTTAGAACGCTCAAAGGCACAAAGTT
AGATAATATATTTCAGGTTGCCAAGTGAATAATAATTTCAAATTTTTATT
CTTCACCCACTCTCAATAATTTAAAAATTTTACAGTAATATTTTATCTTG
AAAATAATTTATTTTTTATTATAAAAAAAGAAAAATTTACAACCTTTTCC
ATTTTTCAAATACCCAAGATCCTTTTGCCTGACTAGATATAAAAAAATCT
AGCGAACTTTTGTCAAGTTAGAGGTTTGCATCAGCCTGACATTGTTCACT
AAAAGAGTGTCTTTTTGAGGAGCTGGTGACAATGTTCCATTCAAGGAGGA
TCTTGTGGAAATGTTTGAGCCACACAAGTCTTCATTTCCAGATCGAAAGT
ACAACAAGCAAACAATAGCCACACCACAAATGATACAAATCACTACGGAA
ACGTGCGACCGTTTCATATTGATGATCCGTGCTAAACGTGTGCCTCGCTT
TCCACTAACTAATGTTC

Coding sequence (CDS) from alignment at sc0000005_pilon:700107..704023-

>MSTRG.1009.1.p1 ID=MSTRG.1009.1.p1|Name=MSTRG.1009.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6174bp|location=Sequence derived from alignment at sc0000005_pilon:700107..704023- (Clytia hemisphaerica_ch_hm2_pilon)
AACTGGACGAGGAAGGAGTGAAGGCATTCATTCGATGTTTATTTGACGAG
CAAACGGAACTGACACTTGCAGACCAACAAAGTGCGACTTGTGTGAATAA
ACTTTGGAAGGCTGAACATGGACAAATGCATGGCCAAACATACCCGATAT
CAGGTGTCAAGAAACAACAAACGAAATGCTATAATTTGAGACGCGAATTT
AAAAATGCAATAAATATGAAGTTTGAAGTCATGAAACCATTGTTAGAACG
CTCAAAGGCACAAAGTTAGCTCCTTGTAAATGTCAACTATCTGAAGAGAA
TGAAGAAATCCTCAAATCTACAAAATGCAACTTAAAAGATGATCTGGTCA
AGACTGAGGCTATCGAATGTTACTATGAGTCGCTGTTGAACAGCTATGGG
CCTACACCTCAAAATGGTGCAATGTGTAGCCGAGAATCACCAGATAGAAA
CCAGTGCAGTTACAAAAGGTTCTGTGTTAAAAGTGCAACAGTTGAGATCA
AAATCCGACATTGTGGATCGTTCTATGTTTATCATTTGAAACCTGTCCGA
AAAATCAACAGACATAAATTTTTCGAGAATCCGAAGAGTGGATTGTATTG
TGGGACCAAAAAGACAAAGATGGTTAAACCTTCAGAAAGAATTCAGACCA
AGTGGAAGCGAGCCTTTCCAGAACTTCCGCTTCTCACCTTTTCCTCCGAG
ACTCTACACCAGGACCACTCCGCTGTACGTGGTGAGCGGAATACATCCGG
ACATCAGCGGAGGTTTCTATTACTTGGTAGTGCTGAGTGTGTTGGTGCAA
CAAGCGAAATGCTTCGACGAATGTTCGCCAGAGAATTACAAAACTTTGGA
TGAAGAATGGAGATACCATGAATACACTTCAATGAAGTTCAACAATCAAG
ATGACACTCAATTAAAAGAAGGCTGGTATCGATTCACAAACAAAGCTTTC
AGAATGCTGGAGAAGGATGAAATGTTCTCTGATTTTGTTGTCAAGAATAG
GATGGGAAAGAAGATGATGATATTCAAAAAACTGGACGAGGAAGGAGTGA
AGGCATTCATTCGATGTTTATTTGACGAGCAAACGGAACTGACACTTGCA
GACCAACAAAGTGCGACTTGTGTGAATAAACTTTGGAAGGCTGAACATGG
ACAAATGCATGGCCAAACATACCCGATATCAGGTGTCAAGAAACAACAAA
CGAAATGCTATAATTTGAGACGCGAATTTAAAAATGCAATAAATATGAAG
TTTGAAGTCATGAAACCATTGTTAGAACGCTCAAAGGCACAAAGTTAGCT
CCTTGTAAATGTCAACTATCTGAAGAGAATGAAGAAATCCTCAAATCTAC
AAAATGCAACTTAAAAGATGATCTGGTCAAGACTGAGGCTATCGAATGTT
ACTATGAGTCGCTGTTGAACAGCTATGGGCCTACACCTCAAAATGGTGCA
ATGTGTAGCCGAGAATCACCAGATAGAAACCAGTGCAGTTACAAAAGGTT
CTGTGTTAAAAGTGCAACAGTTGAGATCAAAATCCGACATTGTGGATCGT
TCTATGTTTATCATTTGAAACCTGTCCGAAAAATCAACAGACATAAATTT
TTCGAGAATCCGAAGAGTGGATTGTATTGTGGGACCAAAAAGACAAAGAT
GGTTAAACCTTCAGAAAGAATTCAGACCAAGTGGAAGCGAGCCTTTCCAG
AACTTCCGCTTCTCACCTTTTCCTCCGAGACTCTACACCAGGACCACTCC
GCTGTACGTGGTGAGCGGAATACATCCGGACATCAGCGGAGGTTTCTATT
ACTTGGTAGTGCTGAGTGTGTTGGTGCAACAAGCGAAATGCTTCGACGAA
TGTTCGCCAGAGAATTACAAAACTTTGGATGAAGAATGGAGATACCATGA
ATACACTTCAATGAAGTTCAACAATCAAGATGACACTCAATTAAAAGAAG
GCTGGTATCGATTCACAAACAAAGCTTTCAGAATGCTGGAGAAGGATGAA
ATGTTCTCTGATTTTGTTGTCAAGAATAGGATGGGAAAGAAGATGATGAT
ATTCAAAAAACTGGACGAGGAAGGAGTGAAGGCATTCATTCGATGTTTAT
TTGACGAGCAAACGGAACTGACACTTGCAGACCAACAAAGTGCGACTTGT
GTGAATAAACTTTGGAAGGCTGAACATGGACAAATGCATGGCCAAACATA
CCCGATATCAGGTGTCAAGAAACAACAAACGAAATGCTATAATTTGAGAC
GCGAATTTAAAAATGCAATAAATATGAAGTTTGAAGTCATGAAACCATTG
TTAGAACGCTCAAAGGCACAAAGTTAGCTCCTTGTAAATGTCAACTATCT
GAAGAGAATGAAGAAATCCTCAAATCTACAAAATGCAACTTAAAAGATGA
TCTGGTCAAGACTGAGGCTATCGAATGTTACTATGAGTCGCTGTTGAACA
GCTATGGGCCTACACCTCAAAATGGTGCAATGTGTAGCCGAGAATCACCA
GATAGAAACCAGTGCAGTTACAAAAGGTTCTGTGTTAAAAGTGCAACAGT
TGAGATCAAAATCCGACATTGTGGATCGTTCTATGTTTATCATTTGAAAC
CTGTCCGAAAAATCAACAGACATAAATTTTTCGAGAATCCGAAGAGTGGA
TTGTATTGTGGGACCAAAAAGACAAAGATGGTTAAACCTTCAGAAAGAAT
TCAGACCAAGTGGAAGCGAGCCTTTCCAGAACTTCCGCTTCTCACCTTTT
CCTCCGAGACTCTACACCAGGACCACTCCGCTGTACGTGGTGAGCGGAAT
ACATCCGGACATCAGCGGAGGTTTCTATTACTTGGTAGTGCTGAGTGTGT
TGGTGCAACAAGCGAAATGCTTCGACGAATGTTCGCCAGAGAATTACAAA
ACTTTGGATGAAGAATGGAGATACCATGAATACACTTCAATGAAGTTCAA
CAATCAAGATGACACTCAATTAAAAGAAGGCTGGTATCGATTCACAAACA
AAGCTTTCAGAATGCTGGAGAAGGATGAAATGTTCTCTGATTTTGTTGTC
AAGAATAGGATGGGAAAGAAGATGATGATATTCAAAAAACTGGACGAGGA
AGGAGTGAAGGCATTCATTCGATGTTTATTTGACGAGCAAACGGAACTGA
CACTTGCAGACCAACAAAGTGCGACTTGTGTGAATAAACTTTGGAAGGCT
GAACATGGACAAATGCATGGCCAAACATACCCGATATCAGGTGTCAAGAA
ACAACAAACGAAATGCTATAATTTGAGACGCGAATTTAAAAATGCAATAA
ATATGAAGTTTGAAGTCATGAAACCATTGTTAGAACGCTCAAAGGCACAA
AGTTAGCTCCTTGTAAATGTCAACTATCTGAAGAGAATGAAGAAATCCTC
AAATCTACAAAATGCAACTTAAAAGATGATCTGGTCAAGACTGAGGCTAT
CGAATGTTACTATGAGTCGCTGTTGAACAGCTATGGGCCTACACCTCAAA
ATGGTGCAATGTGTAGCCGAGAATCACCAGATAGAAACCAGTGCAGTTAC
AAAAGGTTCTGTGTTAAAAGTGCAACAGTTGAGATCAAAATCCGACATTG
TGGATCGTTCTATGTTTATCATTTGAAACCTGTCCGAAAAATCAACAGAC
ATAAATTTTTCGAGAATCCGAAGAGTGGATTGTATTGTGGGACCAAAAAG
ACAAAGATGGTTAAACCTTCAGAAAGAATTCAGACCAAGTGGAAGCGAGC
CTTTCCAGAACTTCCGCTTCTCACCTTTTCCTCCGAGACTCTACACCAGG
ACCACTCCGCTGTACGTGGTGAGCGGAATACATCCGGACATCAGCGGAGG
TTTCTATTACTTGGTAGTGCTGAGTGTGTTGGTGCAACAAGCGAAATGCT
TCGACGAATGTTCGCCAGAGAATTACAAAACTTTGGATGAAGAATGGAGA
TACCATGAATACACTTCAATGAAGTTCAACAATCAAGATGACACTCAATT
AAAAGAAGGCTGGTATCGATTCACAAACAAAGCTTTCAGAATGCTGGAGA
AGGATGAAATGTTCTCTGATTTTGTTGTCAAGAATAGGATGGGAAAGAAG
ATGATGATATTCAAAAAACTGGACGAGGAAGGAGTGAAGGCATTCATTCG
ATGTTTATTTGACGAGCAAACGGAACTGACACTTGCAGACCAACAAAGTG
CGACTTGTGTGAATAAACTTTGGAAGGCTGAACATGGACAAATGCATGGC
CAAACATACCCGATATCAGGTGTCAAGAAACAACAAACGAAATGCTATAA
TTTGAGACGCGAATTTAAAAATGCAATAAATATGAAGTTTGAAGTCATGA
AACCATTGTTAGAACGCTCAAAGGCACAAAGTTAGCTCCTTGTAAATGTC
AACTATCTGAAGAGAATGAAGAAATCCTCAAATCTACAAAATGCAACTTA
AAAGATGATCTGGTCAAGACTGAGGCTATCGAATGTTACTATGAGTCGCT
GTTGAACAGCTATGGGCCTACACCTCAAAATGGTGCAATGTGTAGCCGAG
AATCACCAGATAGAAACCAGTGCAGTTACAAAAGGTTCTGTGTTAAAAGT
GCAACAGTTGAGATCAAAATCCGACATTGTGGATCGTTCTATGTTTATCA
TTTGAAACCTGTCCGAAAAATCAACAGACATAAATTTTTCGAGAATCCGA
AGAGTGGATTGTATTGTGGGACCAAAAAGACAAAGATGGTTAAACCTTCA
GAAAGAATTCAGACCAAGTGGAAGCGAGCCTTTCCAGAACTTCCGCTTCT
CACCTTTTCCTCCGAGACTCTACACCAGGACCACTCCGCTGTACGTGGTG
AGCGGAATACATCCGGACATCAGCGGAGGTTTCTATTACTTGGTAGTGCT
GAGTGTGTTGGTGCAACAAGCGAAATGCTTCGACGAATGTTCGCCAGAGA
ATTACAAAACTTTGGATGAAGAATGGAGATACCATGAATACACTTCAATG
AAGTTCAACAATCAAGATGACACTCAATTAAAAGAAGGCTGGTATCGATT
CACAAACAAAGCTTTCAGAATGCTGGAGAAGGATGAAATGTTCTCTGATT
TTGTTGTCAAGAATAGGATGGGAAAGAAGATGATGATATTCAAAAAACTG
GACGAGGAAGGAGTGAAGGCATTCATTCGATGTTTATTTGACGAGCAAAC
GGAACTGACACTTGCAGACCAACAAAGTGCGACTTGTGTGAATAAACTTT
GGAAGGCTGAACATGGACAAATGCATGGCCAAACATACCCGATATCAGGT
GTCAAGAAACAACAAACGAAATGCTATAATTTGAGACGCGAATTTAAAAA
TGCAATAAATATGAAGTTTGAAGTCATGAAACCATTGTTAGAACGCTCAA
AGGCACAAAGTTAGCTCCTTGTAAATGTCAACTATCTGAAGAGAATGAAG
AAATCCTCAAATCTACAAAATGCAACTTAAAAGATGATCTGGTCAAGACT
GAGGCTATCGAATGTTACTATGAGTCGCTGTTGAACAGCTATGGGCCTAC
ACCTCAAAATGGTGCAATGTGTAGCCGAGAATCACCAGATAGAAACCAGT
GCAGTTACAAAAGGTTCTGTGTTAAAAGTGCAACAGTTGAGATCAAAATC
CGACATTGTGGATCGTTCTATGTTTATCATTTGAAACCTGTCCGAAAAAT
CAACAGACATAAATTTTTCGAGAATCCGAAGAGTGGATTGTATTGTGGGA
CCAAAAAGACAAAGATGGTTAAACCTTCAGAAAGAATTCAGACCAAGTGG
AAGCGAGCCTTTCCAGAACTTCCGCTTCTCACCTTTTCCTCCGAGACTCT
ACACCAGGACCACTCCGCTGTACGTGGTGAGCGGAATACATCCGGACATC
AGCGGAGGTTTCTATTACTTGGTAGTGCTGAGTGTGTTGGTGCAACAAGC
GAAATGCTTCGACGAATGTTCGCCAGAGAATTACAAAACTTTGGATGAAG
AATGGAGATACCATGAATACACTTCAATGAAGTTCAACAATCAAGATGAC
ACTCAATTAAAAGAAGGCTGGTATCGATTCACAAACAAAGCTTTCAGAAT
GCTGGAGAAGGATGAAATGTTCTCTGATTTTGTTGTCAAGAATAGGATGG
GAAAGAAGATGATGATATTCAAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1009MSTRG.1009Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1009.1.p1MSTRG.1009.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1009.1.p1.exon6MSTRG.1009.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1009.1.p1.exon5MSTRG.1009.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1009.1.p1.exon4MSTRG.1009.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1009.1.p1.exon3MSTRG.1009.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1009.1.p1.exon2MSTRG.1009.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1009.1.p1.exon1MSTRG.1009.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005_pilongenomesc0000005_pilon:700107..704023 -