MSTRG.10089.2.p1 (mRNA) -

Overview
NameMSTRG.10089.2.p1
Unique NameMSTRG.10089.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000069_pilon:632074..636928+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10089.2.p1 ID=MSTRG.10089.2.p1|Name=MSTRG.10089.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4855bp|location=Sequence derived from alignment at sc0000069_pilon:632074..636928+ (Clytia hemisphaerica_ch_hm2_pilon)
tttcttttttaataacGGATACTCCCACAACGCTGTTCAATACGCCAACG
GTGGATTCCCTGGTCGTGCAACCACCCAATACACCTCAGTCCACCATCAG
TCAATCTCACATGACGATGGAGATGCTGATGGCTACGTTGATGGAGGCGC
AGGATACGTAGGTGGCGCCGCCGCTGCCGTCCCTGCTGTCAGTGCCGGAT
ACGTCACCGGAGGTGCTGTCCCAGCTGCTGGCTACCTCGGAGGAGCCAGT
GTTGTTGGTAGTAGATATGCAGGATCAGGATATTTGGCACGCTCTTACCA
CCCACGACATGTCCATGTTGGTGTCGGTACCCCAGGTGTCAAAGTCGAGG
TTGAAACTGCCAAATCTGTCATCACCTCAAAACCAGTTCATGTCACTGGA
CAGGTATGGTcaaatcaaattatttcattcaCCAAAAATGACGATATAAA
AACGTTTTAAATGAATGCGCACTTAAAGTTCAATAACTACCCCCATCACA
ATCAACGTTCGATTTAGATTTATTGGAATCTGTagcaattcttttaaaat
tcattttcattttaaaattcacAGAAAATGAGTGAAATCAAGAACATCGT
CAAGGATGTTACAGCTTCATTGGCTAAAACCAGCAAGAAATTGAAGTCCT
TGAAAACTGGTGCCAAACGTCAAATCACACCAGCTTTTACTCCAGTCGTT
TCTGAGCCAGTCGGTGTCCCATCAAACAGATACCCAGTCCCAGCTGCCGA
CAGATACCCATTAGGAGCTGGGTAAGCTATTTTCTCTTTTCAAGGTTATA
CATATCAAAGTTATGCAGACAGTCCCTGTAAAATACAGTCAATATATTTT
TACCTCTACATATTTTTATGGAGAAGATAAAGGGTCAGTCGATGAAAGAG
TCATATACTGTATCATCCTTTTTACAGATTACAATTACAggtgagtctcc
ataactcgaacacccACGAGTGTTTGCTCGAGTTAAgtaaatttcgagtt
atagagtaagaTTAATAGGGCATTCTTAACTGGAGGGACGAAAAACTTGT
TCGGAGGAGAAattcaagttatagaggttcgagttaaagagattctATTA
TACTGGAATTATTTTACGGGTTTTCACGGAGGGCACATGAAAATTTACTC
TACTGAGAAACATTTAATTCTCTTTTGTCCTTCAGATACATCTGGCCATC
AGCTAACTACGGCCATCAATACGGAGGTCCATACTCATGGAGCAAATCTC
ACACACCAAAAGCTGCCCCAGCTGTTGCTGCAAAACCAAGCACTGCCAAA
ACAAGCAAGAAAAGCAATACCAAGAAAAGCAGTAAGTTCACTTAAGCAtg
aatttattttgatgtgTTAAGCCTCGGGGATTGTACAGTCTATCCGTTGA
TCTCTTTTGCATTTACACTTGGCATGTATTTTTCCTTCGGGCTTGGTAAA
GGAGATTTTTATCCCTGCAGTATAGTAAATTATCTGATGAATTTTATTAC
GATTTTGTTGATGTTATTGTATTGTACAGGTGAAAAAGCTAAGCGTTCAG
TATCTGTGAAAACACCAACGGTCGTAGTTGCCAAGAAAGGAGTCAACAAG
AAAGGTTCCAAACGTCAGTTTATCCAACGTGGTTACGGAGGTCAGTTCCT
TTACAACAGCGATAAGGAATGATTTGCAAATTTCTCCCTGAAATTTTGTT
ACACTACATACACACATAATAAAAACATTCACTCATACCATTTATAGGCA
TACAAAAACCTAGaaagtaaaatttggacaaaaaaaaacgaaaaatttga
tttataaaataatgaaatttcatCAAGAATTCGCATTTCATTTCTTGGGc
tatcattttatttatttaatgtCAAAATTGATCTTTTGAGTATCATTATT
taaacaaaactttaaaaaaagattcgaaaacgaatagcaacaaaatcaaa
acgaaaaacaaaTCCTGAATTCGAATTTTTTGTCCGTTCTAGGTATGCCT
ATATATGGTATGGGAGGAGAAGGAGGAGAGGTCATGCCATCACCAAGGTC
ATTCGGATATGGTGGTATCAGAGGTTATGGTAGTCATCATCTCATGGAAG
GAGGTTTCGATGGATTCGGTGTCCCTGGAGGACATATGGGGTACGGTCAT
GTTGGTTATGGTCATCATGGGGGTTACCCAATGAGTGTATTGTCAAACCA
CGGTGACTTTGGTGCTGGATACGCAGGTCCACTCGGTGGTAACTTTGATG
CAGGACACCATGAATATGGAGTTGAAGGTGATATTGGTTTCGGTGGACAT
GGTTATggtgcaggtttaggaggtgcagggttaggaggtgcaggattagg
aggtgcaggattaggaggtgccggattaggtggtCTCGGTGGACACTATG
GTGGTAGATATGCTGGTCATGCCGGTATCTTTGGAGGTAGCTTCCATCAT
TTGGGAGGTCCTGGAATTGTTGGTGATTATGAAGGAGATCGCGGTGCATT
GGTTATGTCTGACCATGCTGGGTTTGGTGCACATGGATATGGAGGACCTG
CATTATTAGGTGGACGTGTTGGATTTGCTGGTGATCACGGTTACGGCTAT
GAAGGCCGCGCTGGTTTAGGATATGGCCATGGATTCGGTGGATATGGACA
TGGTATTGGTTACGGACATGCTGGAGTCATGGACGGTCATTTAGGCTATG
GTCATACCAGTTTTGATGCTGGAGTACACGGTGGTCTAGGACTTGATATT
GGTGCTCATGGTATTGAAGGACACAGTGGATATGGTGGTATGCACGGCTT
TGTAGGTCTTCCTCATGCTGCTGGTGCTGGATTTCCAGGCTATGCTAGAG
AAAGTAAGCATCCTTTAGATATAAAGCTACACAGTAAAAGCTATCAACAA
AATAAGTTACACTTTAAAGTTTAGATCTTTTTTGTTAAGGACAGAGAATT
TACTCAACAAAATGTTATATTGTACCGAACGTGTAGCGAACAGTCCAACA
TcagaaatgtttaaaaatgttaGGACGCGTCATCCACTCGAAACCGTTGT
AGAAATAGCACTTCCTCCGCCGCGCGATATCGGTTTAGTGCCCACCCTCT
CCAATAAGAGATGATATATATTCCATTATAATAGCTTTCATCAACGATAA
TCAAGAAATCTGCTACGAAACACTGATCTTCCGAAGCCTGTAAAATAATT
CTTTCGGAATTTTAGTATTATTTTTACTGTAAAAGATATGATCTTAGGTT
AAGTTAAAATCAGTAACGATATTTGAAAATTCTCTATTTTCTGCTCTGTC
ACtaatcttttattttcattattttctctTACCAGACATCGAACAAGCAT
CAGAagagcaacaacaacaacaatatgCACCAAGCAGCCGTTCAATGATG
CCAGATCCTATGTACAGCAACGAACAAGAACAATATGCACCAGTAAGTCC
ATTGTCTTACTTCACACAACTCTGAGTGACATCATATCTTTCATATGATC
CTAGAATCGGCGTTGCAACTTTTCCTTttgtagacgaaaatccgtccaGG
GgacttttttttagaatttctgTCTTAATTGTAAGCTTCTGACTAAGGGC
CGTTTTTCCCTTTCGCTGCAAGTCCCAGTTAGGGCTGCAAATACACAAAT
TTGCAAGATTCATTTTTCTTAGGGTGCCATTTTTGGTAACAATTGATAAG
AATTAGGAATCAGTTTCTATTAATCGGCAACCAaaagtttctaatttttt
attggATACTTTTCTTTCAGGAGAGCCAGTACGAGATGCAACAACGTATG
CAACCTGAATATATGTCAGCCAAAAAATCATCCGTACCAAAGAAAGCTAA
CCACTAAAGGAGAGAAAGGTATGGGGAGGACTCTACTTTCTATGTTTGGC
AAAGTTTCTATGGCATCCACTACCTTAACATTTTTCCTTGATTGGCTTAA
CAAAGTCCCGCTAACCTTTCTACCTGATATTAAAAGTTTTGTAACTCAGG
GAAGGTATTCGAGCAATTTTGCGTAGAAATTTCAATTGCTTTCCACACAC
ATCTATTTGCTTTGTTTAAAATGTTAATCCTTATAATTAATGAAGATTGT
TAAATAATTATCATTAATTGACTTTTTACCTCGTTTCTAGAGCATTCAAG
GATGGCTTTACAATCGCCAATATTGATGACTGGGTATTGAAGAACCAACC
CAAATATTGAATTTTCCTGCCGTAAAGATCCTCGGATGGGAGAAATGATC
GTACATACACTGCTTCGCTACCATATTGCTTCAAAATAGATCAAATATGT
GTCCATTattattcatttaaaaaatttgtgttttattttatttgttacTA
ACCATGTCATACTATATAGGAGccttgtaaattttttaaaaattatatgt
GTTCGGCTCAGGTTATACTTTATTTAGGGTCGatcatgttgttgtttttt
ctgttaGAAAGCTAATAGGCATAATGCCAGGGAAAGTAAaagatcaatgt
tttttttgctcaagccttacattttgtctttagtttttatttgaattttt
tgtttttgtctgtttgtttCAACGATCTTTAAGCAATTTGGAAGCACTGT
GAAGTTGAAAGttagaaaaaagtgtaactCTTAGATAATTATATACATAT
ATTTTTGTCCTCGCATTTATTTAATTGTCTAATTAATTTGTTAGAGTATT
TATTGCAAAATATAAATATAGTTTTTTACAAATAATcgaaaaagttgata
tttgaATTCATGTCGTTCTCCCAAAAACAACTGGATAAATTTTCGTTTGA
AAATTACTGTGAAATTTTGTTCTCGTTTGTGAGAGTAACACCGGTGGTCA
TGGGG

Coding sequence (CDS) from alignment at sc0000069_pilon:632074..636928+

>MSTRG.10089.2.p1 ID=MSTRG.10089.2.p1|Name=MSTRG.10089.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4695bp|location=Sequence derived from alignment at sc0000069_pilon:632074..636928+ (Clytia hemisphaerica_ch_hm2_pilon)
ttcttttttaataacGGATACTCCCACAACGCTGTTCAATACGCCAACGG
TGGATTCCCTGGTCGTGCAACCACCCAATACACCTCAGTCCACCATCAGT
CAATCTCACATGACGATGGAGATGCTGATGGCTACGTTGATGGAGGCGCA
GGATACGTAGGTGGCGCCGCCGCTGCCGTCCCTGCTGTCAGTGCCGGATA
CGTCACCGGAGGTGCTGTCCCAGCTGCTGGCTACCTCGGAGGAGCCAGTG
TTGTTGGTAGTAGATATGCAGGATCAGGATATTTGGCACGCTCTTACCAC
CCACGACATGTCCATGTTGGTGTCGGTACCCCAGGTGTCAAAGTCGAGGT
TGAAACTGCCAAATCTGTCATCACCTCAAAACCAGTTCATGTCACTGGAC
AGAAAATGAGTGAAATCAAGAACATCGTCAAGGATGTTACAGCTTCATTG
GCTAAAACCAGCAAGAAATTGAAGTCCTTGAAAACTGGTGCCAAACGTCA
AATCACACCAGCTTTTACTCCAGTCGTTTCTGAGCCAGTCGGTGTCCCAT
CAAACAGATACCCAGTCCCAGCTGCCGACAGATACCCATTAGGAGCTGGA
TACATCTGGCCATCAGCTAACTACGGCCATCAATACGGAGGTCCATACTC
ATGGAGCAAATCTCACACACCAAAAGCTGCCCCAGCTGTTGCTGCAAAAC
CAAGCACTGCCAAAACAAGCAAGAAAAGCAATACCAAGAAAAGCAACATC
GAACAAGCATCAGAagagcaacaacaacaacaatatgCACCAAGCAGCCG
TTCAATGATGCCAGATCCTATGTACAGCAACGAACAAGAACAATATGCAC
CAGAGAGCCAGTACGAGATGCAACAACGTATGCAACCTGAATATATGTCA
GCCAAAAAATCATCCGTACCAAAGAAAGCTAACCACTAAttcttttttaa
taacGGATACTCCCACAACGCTGTTCAATACGCCAACGGTGGATTCCCTG
GTCGTGCAACCACCCAATACACCTCAGTCCACCATCAGTCAATCTCACAT
GACGATGGAGATGCTGATGGCTACGTTGATGGAGGCGCAGGATACGTAGG
TGGCGCCGCCGCTGCCGTCCCTGCTGTCAGTGCCGGATACGTCACCGGAG
GTGCTGTCCCAGCTGCTGGCTACCTCGGAGGAGCCAGTGTTGTTGGTAGT
AGATATGCAGGATCAGGATATTTGGCACGCTCTTACCACCCACGACATGT
CCATGTTGGTGTCGGTACCCCAGGTGTCAAAGTCGAGGTTGAAACTGCCA
AATCTGTCATCACCTCAAAACCAGTTCATGTCACTGGACAGAAAATGAGT
GAAATCAAGAACATCGTCAAGGATGTTACAGCTTCATTGGCTAAAACCAG
CAAGAAATTGAAGTCCTTGAAAACTGGTGCCAAACGTCAAATCACACCAG
CTTTTACTCCAGTCGTTTCTGAGCCAGTCGGTGTCCCATCAAACAGATAC
CCAGTCCCAGCTGCCGACAGATACCCATTAGGAGCTGGATACATCTGGCC
ATCAGCTAACTACGGCCATCAATACGGAGGTCCATACTCATGGAGCAAAT
CTCACACACCAAAAGCTGCCCCAGCTGTTGCTGCAAAACCAAGCACTGCC
AAAACAAGCAAGAAAAGCAATACCAAGAAAAGCAACATCGAACAAGCATC
AGAagagcaacaacaacaacaatatgCACCAAGCAGCCGTTCAATGATGC
CAGATCCTATGTACAGCAACGAACAAGAACAATATGCACCAGAGAGCCAG
TACGAGATGCAACAACGTATGCAACCTGAATATATGTCAGCCAAAAAATC
ATCCGTACCAAAGAAAGCTAACCACTAAttcttttttaataacGGATACT
CCCACAACGCTGTTCAATACGCCAACGGTGGATTCCCTGGTCGTGCAACC
ACCCAATACACCTCAGTCCACCATCAGTCAATCTCACATGACGATGGAGA
TGCTGATGGCTACGTTGATGGAGGCGCAGGATACGTAGGTGGCGCCGCCG
CTGCCGTCCCTGCTGTCAGTGCCGGATACGTCACCGGAGGTGCTGTCCCA
GCTGCTGGCTACCTCGGAGGAGCCAGTGTTGTTGGTAGTAGATATGCAGG
ATCAGGATATTTGGCACGCTCTTACCACCCACGACATGTCCATGTTGGTG
TCGGTACCCCAGGTGTCAAAGTCGAGGTTGAAACTGCCAAATCTGTCATC
ACCTCAAAACCAGTTCATGTCACTGGACAGAAAATGAGTGAAATCAAGAA
CATCGTCAAGGATGTTACAGCTTCATTGGCTAAAACCAGCAAGAAATTGA
AGTCCTTGAAAACTGGTGCCAAACGTCAAATCACACCAGCTTTTACTCCA
GTCGTTTCTGAGCCAGTCGGTGTCCCATCAAACAGATACCCAGTCCCAGC
TGCCGACAGATACCCATTAGGAGCTGGATACATCTGGCCATCAGCTAACT
ACGGCCATCAATACGGAGGTCCATACTCATGGAGCAAATCTCACACACCA
AAAGCTGCCCCAGCTGTTGCTGCAAAACCAAGCACTGCCAAAACAAGCAA
GAAAAGCAATACCAAGAAAAGCAACATCGAACAAGCATCAGAagagcaac
aacaacaacaatatgCACCAAGCAGCCGTTCAATGATGCCAGATCCTATG
TACAGCAACGAACAAGAACAATATGCACCAGAGAGCCAGTACGAGATGCA
ACAACGTATGCAACCTGAATATATGTCAGCCAAAAAATCATCCGTACCAA
AGAAAGCTAACCACTAAttcttttttaataacGGATACTCCCACAACGCT
GTTCAATACGCCAACGGTGGATTCCCTGGTCGTGCAACCACCCAATACAC
CTCAGTCCACCATCAGTCAATCTCACATGACGATGGAGATGCTGATGGCT
ACGTTGATGGAGGCGCAGGATACGTAGGTGGCGCCGCCGCTGCCGTCCCT
GCTGTCAGTGCCGGATACGTCACCGGAGGTGCTGTCCCAGCTGCTGGCTA
CCTCGGAGGAGCCAGTGTTGTTGGTAGTAGATATGCAGGATCAGGATATT
TGGCACGCTCTTACCACCCACGACATGTCCATGTTGGTGTCGGTACCCCA
GGTGTCAAAGTCGAGGTTGAAACTGCCAAATCTGTCATCACCTCAAAACC
AGTTCATGTCACTGGACAGAAAATGAGTGAAATCAAGAACATCGTCAAGG
ATGTTACAGCTTCATTGGCTAAAACCAGCAAGAAATTGAAGTCCTTGAAA
ACTGGTGCCAAACGTCAAATCACACCAGCTTTTACTCCAGTCGTTTCTGA
GCCAGTCGGTGTCCCATCAAACAGATACCCAGTCCCAGCTGCCGACAGAT
ACCCATTAGGAGCTGGATACATCTGGCCATCAGCTAACTACGGCCATCAA
TACGGAGGTCCATACTCATGGAGCAAATCTCACACACCAAAAGCTGCCCC
AGCTGTTGCTGCAAAACCAAGCACTGCCAAAACAAGCAAGAAAAGCAATA
CCAAGAAAAGCAACATCGAACAAGCATCAGAagagcaacaacaacaacaa
tatgCACCAAGCAGCCGTTCAATGATGCCAGATCCTATGTACAGCAACGA
ACAAGAACAATATGCACCAGAGAGCCAGTACGAGATGCAACAACGTATGC
AACCTGAATATATGTCAGCCAAAAAATCATCCGTACCAAAGAAAGCTAAC
CACTAAttcttttttaataacGGATACTCCCACAACGCTGTTCAATACGC
CAACGGTGGATTCCCTGGTCGTGCAACCACCCAATACACCTCAGTCCACC
ATCAGTCAATCTCACATGACGATGGAGATGCTGATGGCTACGTTGATGGA
GGCGCAGGATACGTAGGTGGCGCCGCCGCTGCCGTCCCTGCTGTCAGTGC
CGGATACGTCACCGGAGGTGCTGTCCCAGCTGCTGGCTACCTCGGAGGAG
CCAGTGTTGTTGGTAGTAGATATGCAGGATCAGGATATTTGGCACGCTCT
TACCACCCACGACATGTCCATGTTGGTGTCGGTACCCCAGGTGTCAAAGT
CGAGGTTGAAACTGCCAAATCTGTCATCACCTCAAAACCAGTTCATGTCA
CTGGACAGAAAATGAGTGAAATCAAGAACATCGTCAAGGATGTTACAGCT
TCATTGGCTAAAACCAGCAAGAAATTGAAGTCCTTGAAAACTGGTGCCAA
ACGTCAAATCACACCAGCTTTTACTCCAGTCGTTTCTGAGCCAGTCGGTG
TCCCATCAAACAGATACCCAGTCCCAGCTGCCGACAGATACCCATTAGGA
GCTGGATACATCTGGCCATCAGCTAACTACGGCCATCAATACGGAGGTCC
ATACTCATGGAGCAAATCTCACACACCAAAAGCTGCCCCAGCTGTTGCTG
CAAAACCAAGCACTGCCAAAACAAGCAAGAAAAGCAATACCAAGAAAAGC
AACATCGAACAAGCATCAGAagagcaacaacaacaacaatatgCACCAAG
CAGCCGTTCAATGATGCCAGATCCTATGTACAGCAACGAACAAGAACAAT
ATGCACCAGAGAGCCAGTACGAGATGCAACAACGTATGCAACCTGAATAT
ATGTCAGCCAAAAAATCATCCGTACCAAAGAAAGCTAACCACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10089MSTRG.10089Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10089.2.p1MSTRG.10089.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10089.2.p1.exon1MSTRG.10089.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10089.2.p1.exon2MSTRG.10089.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10089.2.p1.exon3MSTRG.10089.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10089.2.p1.exon4MSTRG.10089.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10089.2.p1.exon5MSTRG.10089.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10089.2.p1.exon6MSTRG.10089.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069_pilongenomesc0000069_pilon:632074..636928 +