MSTRG.1008.1.p1 (mRNA) -

Overview
NameMSTRG.1008.1.p1
Unique NameMSTRG.1008.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:694359..697580+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1008.1.p1 ID=MSTRG.1008.1.p1|Name=MSTRG.1008.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3222bp|location=Sequence derived from alignment at sc0000005_pilon:694359..697580+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGGAGGAACTACCAGCACGACCATCTCTGTCACGCAACCCCCGACCATC
TCTGTCACACAACCCCCGACCATCTCTGTCACGCAACCCCCGACCATCTC
TGTCACGCAACCCCCGACCATCTCTGTCACGCAACCCACGACGATCTCTG
TCACACAACCCCCGGAACCAGAACAAATTCTTACCAAAGAACCAGCAGGA
GTGGAGATTGGCCAACCTTTTGTTGAAAACATCCTTGTGGAGAGAGAAAA
GTCTACCACAACGACGACCCAGCAACCCGATGTCGAAACACAGTCATTTT
GTGGTTTAAACCCGTTTATTTATTTCGTTTTCATACAATTACAGTGCtca
aatatttttcgttttaaaCGAGAGAACCTAAATGTTTTGAATTCCTAGCT
TTATGTATAAAAACCTGTCTCCTTCTGTCATAAGATCTATGCTCTTTGAT
GCTTTTGATCTTTAAAATCAAAGGAAGAACGGGACATAACCAACTGGGCA
GTAAGGagtgtcccgggggggggggtacttaacGAAGGCAAACTGTAAAC
TGTATGTGTGAGCCACAAGGGCCCCTTTATCACACCCTCGAAAATCCCTA
AAAAATCGACTCAAAGCGTCATGAactcttgaaatttggactaaaatatG
AACATTTCTGCTAAGATTTTGgggaaatagtctctctaagggtggcaaaa
atgtcaaaaatagatgtcaaaaaatagacaaaaatgctcgaaattcagtc
tctctaagagttGTACTTTTGATCCTTTGGGCATAGAATTTTCATATCTT
TTGGGTGCAGATGTACTTTGAAGTCTCCTGAGCTCAGCTCTATAGTTATT
TTTCCCATAATGTTCTGGTATCAAAGGTTATAGCCTCTAGAAGATTGCTC
TCTTATTGGATTCAAAACACCCAGTATTTTGCTGGGttttttttCACTCC
ACCGCGCTACCTTCTAAAATTTCTACTAAATAATTGTATGTGCCACAGAC
CTGGTGAAAGATTTATCCCTCGGTGAGAGTGAACATTTATCAAAacccca
atggggatagaaattatattgtccccattgctcaaaatttcagaattgaA
GCATCgcttaaaaatgaaatagaaaGGTTGTAGTGCACACTTAAAACAAT
TGGACTTCTAATTTGGTGTAAAATTTCAACACGATAGacgcttttcataa
attatgtcacaaacatcacttgcctcgtattcaagcaattaccatggtga
ttatctCACTTGAgacattaaaagattttttttatgaataggaagtactt
ttaataaaatccgctgggactTAATCACCacggcaataatttcaaaacga
ggtaagtgatgttcgtaacgtaatttaagaaaaaggtctattggtgaAAG
TTTTGTTATTCCAATtatcctgtttttttttcagacgaCAAAGGTTGCTA
CCGCCTTGCAAAAGGACTTCAAGGTGAGATAGAGGTCTGCTATGGTTTCA
GTCGAAAGCAACCTGCACGGTTTTTGTTTCCGAAAAAAGGACAAGTGGTT
GGTTACAGGCTGGTCCACTCAAATGGTTTAATGACTTGCCAACCACAGGG
AACAACTCAATCGACCAAATGGGGTTGTGAAGGACGCATAGGTATATAGT
ACATGTTTTTATCAAACTCTCTGATCTTTCCATCCTGTCTATCTTGTTCA
AAATACGGCTTTGTTCTTAGAAAGTCTTATAGGTACCTATCGGCATTTTT
AAAGCCCTTTCTTATtagctttatttttggaaattacCGGTCGTACTCGC
CTTAGGTTGGTTAAGTGTACAATTGTACCTTGTATTGGGTCATTCATCGC
CTATTTGGACTTTTTTGTGGGGACAGTAAATTTTAATCTAAAAAGatata
agaaaacaaaaattcaaaacattttttgtagtactttaagtttcttgcgt
acaatcatcagctacatacaaaatgatctaacttgttggaaaaaatttta
cAAGTCGTAGGGTCGTAAAATGTcgtaaaattataataaaaatttgaaac
aaaagaaacgtGATTCTCAAGGGTTCGTATGGTAagaaagcccccccccc
ccccctcaagaaAGATATAGAAAAATATGAATGCATATTTGAAGtcggca
aaatttcaaaatttcaaaagagtGTATGTCGGTCATCTTCATTTCATTCT
TTGTTCTCATGTTTTCATTTATGCAAACTTTAAAGCTTATATTTTAATCC
ACTCagaattatctttccaatgagGTATTTTTCGTTTTATCAAATATTTA
TCCCTTCAAGAGCAATGCATAAAAATTCATTACTTGCTAGCTTCTTATTT
TTGTTTGCTTATCTGCAGAAACCATAATAACAGACAATACCTATCGAAAA
CTACACTCAAACTGGGAATGTCGATGGTTCGGTAGTGAAATTCACTTGGG
AAAGGTACTGGAATGGTTTCGCGCCTCGAAAAACGAAATCTGATGAGGGA
AGAGTTTGGTATGAGGTTCGTGTTATTCTTTGAAACCTTTATTTAtacgt
ttttaatttcacagtcCTTTatattcattgccgtagagggtctgttatCA
TTGTCTTctctgatttgagatttttaaaaCCGACCGCTGTGACGGAGTAC
GGCTGAGAGAGGGGAaacgacgagagaagtgttgttatttatataaatca
tacttcatcgtaGAGGTTTTCCATATTCTGGTACAGAGCATCCCTCATAC
TCGCCCGCTCACTCATTCGCTCATTCAATACATTCACTCATCCAAtacat
tcactcatccaatacattcactcatccaatacattcactcatccaataca
ttcattcatccaatacattcactcatccaatacattcactcatccaatac
attcactcatccaatacattcactcatccaatacattcattcatccaata
cattcactcatccaatacattcactcatccaatacattcactcatccaat
acattcattcatccaatacattcactcatccaatatatttattattttca
gttggATTTGATGAACAACAATGTGACAGATTTGAACGGAAGTgatggaa
gacattgcattgtcgTCTGGGTAATGTATAAACgttatcaattttgatga
taaaTGATTATGGTGatcgggggtactagggttgggaGTACTAggtatgt
gccgcccgactttcgaccctcc

Coding sequence (CDS) from alignment at sc0000005_pilon:694359..697580+

>MSTRG.1008.1.p1 ID=MSTRG.1008.1.p1|Name=MSTRG.1008.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1899bp|location=Sequence derived from alignment at sc0000005_pilon:694359..697580+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAGGAACTACCAGCACGACCATCTCTGTCACGCAACCCCCGACCATCTC
TGTCACACAACCCCCGACCATCTCTGTCACGCAACCCCCGACCATCTCTG
TCACGCAACCCCCGACCATCTCTGTCACGCAACCCACGACGATCTCTGTC
ACACAACCCCCGGAACCAGAACAAATTCTTACCAAAGAACCAGCAGGAGT
GGAGATTGGCCAACCTTTTGTTGAAAACATCCTTGTGGAGAGAGAAAAGT
CTACCACAACGACGACCCAGCAACCCGATGTCGAAACACAGTCATTTTGT
GacgaCAAAGGTTGCTACCGCCTTGCAAAAGGACTTCAAGGTGAGATAGA
GGTCTGCTATGGTTTCAGTCGAAAGCAACCTGCACGGTTTTTGTTTCCGA
AAAAAGGACAAGTGGTTGGTTACAGGCTGGTCCACTCAAATGGTTTAATG
ACTTGCCAACCACAGGGAACAACTCAATCGACCAAATGGGGTTGTGAAGG
ACGCATAGAAACCATAATAACAGACAATACCTATCGAAAACTACACTCAA
ACTGGGAATGTCGATGGTTCGGTAGTGAAATTCACTTGGGAAAGGTACTG
GAATGGTTTCGCGCCTCGAAAAACGAAATCTGAGGAGGAACTACCAGCAC
GACCATCTCTGTCACGCAACCCCCGACCATCTCTGTCACACAACCCCCGA
CCATCTCTGTCACGCAACCCCCGACCATCTCTGTCACGCAACCCCCGACC
ATCTCTGTCACGCAACCCACGACGATCTCTGTCACACAACCCCCGGAACC
AGAACAAATTCTTACCAAAGAACCAGCAGGAGTGGAGATTGGCCAACCTT
TTGTTGAAAACATCCTTGTGGAGAGAGAAAAGTCTACCACAACGACGACC
CAGCAACCCGATGTCGAAACACAGTCATTTTGTGacgaCAAAGGTTGCTA
CCGCCTTGCAAAAGGACTTCAAGGTGAGATAGAGGTCTGCTATGGTTTCA
GTCGAAAGCAACCTGCACGGTTTTTGTTTCCGAAAAAAGGACAAGTGGTT
GGTTACAGGCTGGTCCACTCAAATGGTTTAATGACTTGCCAACCACAGGG
AACAACTCAATCGACCAAATGGGGTTGTGAAGGACGCATAGAAACCATAA
TAACAGACAATACCTATCGAAAACTACACTCAAACTGGGAATGTCGATGG
TTCGGTAGTGAAATTCACTTGGGAAAGGTACTGGAATGGTTTCGCGCCTC
GAAAAACGAAATCTGAGGAGGAACTACCAGCACGACCATCTCTGTCACGC
AACCCCCGACCATCTCTGTCACACAACCCCCGACCATCTCTGTCACGCAA
CCCCCGACCATCTCTGTCACGCAACCCCCGACCATCTCTGTCACGCAACC
CACGACGATCTCTGTCACACAACCCCCGGAACCAGAACAAATTCTTACCA
AAGAACCAGCAGGAGTGGAGATTGGCCAACCTTTTGTTGAAAACATCCTT
GTGGAGAGAGAAAAGTCTACCACAACGACGACCCAGCAACCCGATGTCGA
AACACAGTCATTTTGTGacgaCAAAGGTTGCTACCGCCTTGCAAAAGGAC
TTCAAGGTGAGATAGAGGTCTGCTATGGTTTCAGTCGAAAGCAACCTGCA
CGGTTTTTGTTTCCGAAAAAAGGACAAGTGGTTGGTTACAGGCTGGTCCA
CTCAAATGGTTTAATGACTTGCCAACCACAGGGAACAACTCAATCGACCA
AATGGGGTTGTGAAGGACGCATAGAAACCATAATAACAGACAATACCTAT
CGAAAACTACACTCAAACTGGGAATGTCGATGGTTCGGTAGTGAAATTCA
CTTGGGAAAGGTACTGGAATGGTTTCGCGCCTCGAAAAACGAAATCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1008MSTRG.1008Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1008.1.p1MSTRG.1008.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1008.1.p1.exon1MSTRG.1008.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1008.1.p1.exon2MSTRG.1008.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1008.1.p1.exon3MSTRG.1008.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1008.1.p1.exon4MSTRG.1008.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005_pilongenomesc0000005_pilon:694359..697580 +