MSTRG.10003.1.p1 (mRNA) -

Overview
NameMSTRG.10003.1.p1
Unique NameMSTRG.10003.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000068_pilon:901354..904475-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10003.1.p1 ID=MSTRG.10003.1.p1|Name=MSTRG.10003.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3122bp|location=Sequence derived from alignment at sc0000068_pilon:901354..904475- (Clytia hemisphaerica_ch_hm2_pilon)
AAAACCTTCCCACCCTCGTATTACGTACGAAATGAAAACATGAAAGAAGT
TATCGCCAGTCTTGAAGAACATTCATCACTTCTTGGAGGGAAAATTCTCG
TCGGATATAATCCCATAAGCCATCTCAGAATACTTGGACTCAATGATGAA
AAGATCGAGAGTGTTCTGCATTTTTCTGAGTGCCCTGATCACTATGACAA
CACAATCGTTTGTATTTATCCGAATCATAGCTTGATGTTTGTTTACGTGG
TTGGTGAAAACGAAAAACATCTTGACAAGAATTTGGCGAAAGTCAATGCA
GTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTCTCCAAAATGAACA
GTTTACCATTGTTGGAGTTCTTGTCTTACCAGCTTCAAGTGACTTGAAAA
AAATGAAGCAGCATCCTTGCTTGAATCTAAACACAAAGAGTCAGGACTTT
GTCATTTCTTTCGATGAAAACTTTGGACAATGGTTGACCAGCTTCTTAAA
ATTAATCCGGGATAATCGAAAGCTTTCATCACCTTCAACGCCAGGAATAA
TGGAAATCATTGCAGGGAACATGATGGCAAGCATGGCACAAACCAAAATC
TACCTTCCTCGTGTTTCAGGAAATGATACTATTAACGTTAAGACAATCCT
GTTAACTGAACCTCAAATTTCCTGCATCGAAAGCCAGTCGAACTGGAAGA
TGATTCAAGCTTCCTATGGCGCTGGCAAATCAATAACTTTACACGAAATT
GCAAGGAAACTGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTAC
TTTCGACCCATTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACG
AGCTTTGTAAACAAGAAAAATTGACACAAAAACGAGAAAATCTCATCTCA
TTATCGCTTTCTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTA
CAACTGTTCCTCATTACCATCCAAAAATATTGCAGACGTCATGCTTCTCT
TAAAAAACAAACACAAACATCGAAAAATACATTTCCTTTTTGATGAAGTT
CCGCAAGAGCTGTTCACAAAGACCTACTCGGAAACACTACGTAGCCATTT
GGAAAGTGAATTTCGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTGTAC
AGAAATTTCGAAAGATAACCGAGGAAGGCAAGGTTACCAATTCACAGGAG
ATTGATTTAAAAAGCTCAGGCATGGAACTTTTCAAACTACCAACCACAAT
GAGGATGAGCAGTTGCTTACATAAATTGAAAGAAGTTTTGGAAGGTGAAA
TCGAAAGTTCGCCCTGCTCCTTAAACTTAGAAATTCGATCGAAAGGTATT
ACATACTATTTACGTAACATTCTTTTATAATCGTGTTCAATTGCAACAGT
GTGCAAGTAAAATATGCTCATTTCCATTTATGACCGAAATATTTTCTTAC
ATTTTAATTTTTATTTTTCAGGAAACGTTTTGCTAACAAAAGACGAATCT
AACAATGCCATAATCCAGGAAACTCAATCAAATGGAGATGACGAAAATAG
GCCAGGTGGCTCTCAATCAACAACAAAAGATGAATTTCAGGTTAATGAGG
TAATTTTGTTAATGAGTGTACTGTTTATAATTAGCTTACCATTCAAATTG
AATAATGAAGCTATTTTGGGCTAAGTTGGGCTTAAATAAAGGACCAAAAT
TCAATTGGGAAGATTAATATATTCCATTTTTTTGAGCCAGAAAACTCAGT
AGGGATGGAAAAAATAGCACAATTCTTTTTAGAGTACAATTTTCCACCGG
GGACTATATTTTCATCAGTTCTCTTTTAATATGAATGGGTTCTACTTGAT
CTGTGATAAGTGGCTGATTGCCATCGATTTTAAAGCCCCAAAGAGGCTAG
TTCTAAAATTCCTGAATGGGAAATGAAGCCACTTATTTCCCAATCAAAAC
ACGTAACCCGTGTGTTTTTCAAATAAAATTTAAAAGTGCACGGCAAAGTT
AAGGCTTCACTTTTTCTTGCTTTAAAAGGTAGAAGGTTCTTCTCTAGCAC
CTTCGTACGATGACCCAGAAGGCTCAAAACACGCACTTCTAGTTTTCACA
CACTTCCAGTTCTTATAAAATTTGTGTACTAGAACTTTCTTAGGTCAATG
GCCCAGAAGGCTTCAAGTGACACTGCACACTTCTGACTTGTTATCACAGC
GGGAAATTTCCAAGCAAGCGGCCCGCGCAATGAAATGGCCTCCTGGGCCA
TGACCCTAGACAGTTCTAGTGCACAAATTTTATAAGAACTGGAAGTGCGT
GGTGAGCCTTAGGAGCCATCGAGGCTTCAAACTGAGTTGCACCACTTTAC
CAACTACAGAAGAAAAACAAGCCGTGACTTTTCTTAATTCAATTTTTACA
ATTAAACCTTACCTTTATGTTTTAACGAGAAATTTCAAATTACTTCCCAT
TTATTAGCAAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGA
AGCTACGCGACCCTGAAAACGTTTTTAAGTCGCAGCCACAGACGAGTGAA
AACGAAGAAGTCGTGAAAGAACTGTCCACTACATATACCTATATGAAAGG
GAAATGTGGACATTCTTTCGGGAGCTTTTTGAAACCACGAATCTTTTATT
CCACCAAAGCTTTCACACCTTTATTTGCTTGGTTCCTTCCGATACTAGCT
GCAACCCTCAAGTTCTGTTTGGATGAGAGAAAGGAGGACGAAGTTGTGGT
ATTGTGCGAGGATATCTGTCAAGTAAAAATGGTTCAGTATGCCCTGGAAA
GGATACACAAGCGTCCAATTGCATACGCACCTTACCTTACCGGAGAATAT
CCTCAAGACATCCACAAGATGAAGGAAACATTCGTCAAAAATTTGGACGA
GATGGAGACCGTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGGAAA
TGGCTCATACAATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCACAT
TTTCTCGTCGAAGCAATCACACGAACCATAACAAATCTTGATGTCATTTC
AACGAAACCTTTTTCACAAAATGCTTCCACGAGTATCGAGAGAGCTTTCC
AAAAATTTGTCGATGGGACTTT

Coding sequence (CDS) from alignment at sc0000068_pilon:901354..904475-

>MSTRG.10003.1.p1 ID=MSTRG.10003.1.p1|Name=MSTRG.10003.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6408bp|location=Sequence derived from alignment at sc0000068_pilon:901354..904475- (Clytia hemisphaerica_ch_hm2_pilon)
CAAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACG
CGACCCTGAAAACGTTTTTAAGTCGCAGCCACAGACGAGTGAAAACGAAG
AAGTCGTGAAAGAACTGTCCACTACATATACCTATATGAAAGGGAAATGT
GGACATTCTTTCGGGAGCTTTTTGAAACCACGAATCTTTTATTCCACCAA
AGCTTTCACACCTTTATTTGCTTGGTTCCTTCCGATACTAGCTGCAACCC
TCAAGTTCTGTTTGGATGAGAGAAAGGAGGACGAAGTTGTGGTATTGTGC
GAGGATATCTGTCAAGTAAAAATGGTTCAGTATGCCCTGGAAAGGATACA
CAAGCGTCCAATTGCATACGCACCTTACCTTACCGGAGAATATCCTCAAG
ACATCCACAAGATGAAGGAAACATTCGTCAAAAATTTGGACGAGATGGAG
ACCGTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGGAAATGGCTCA
TACAATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCACATTTTCTCG
TCGAAGCAATCACACGAACCATAACAAATCTTGATGTCATTTCAACGAAA
CCTTTTTCACAAAATGCTTCCACGAGTATCGAGAGAGCTTTCCAAAAATT
TGTCGATGGGACTGAAACGTTTTGCTAACAAAAGACGAATCTAACAATGC
CATAATCCAGGAAACTCAATCAAATGGAGATGACGAAAATAGGCCAGGTG
GCTCTCAATCAACAACAAAAGATGAATTTCAGGTTAATGAGAAAACCTTC
CCACCCTCGTATTACGTACGAAATGAAAACATGAAAGAAGTTATCGCCAG
TCTTGAAGAACATTCATCACTTCTTGGAGGGAAAATTCTCGTCGGATATA
ATCCCATAAGCCATCTCAGAATACTTGGACTCAATGATGAAAAGATCGAG
AGTGTTCTGCATTTTTCTGAGTGCCCTGATCACTATGACAACACAATCGT
TTGTATTTATCCGAATCATAGCTTGATGTTTGTTTACGTGGTTGGTGAAA
ACGAAAAACATCTTGACAAGAATTTGGCGAAAGTCAATGCAGTCTTGAAA
ACATGGTGTTATGTTCACAGGCAGATTCTCCAAAATGAACAGTTTACCAT
TGTTGGAGTTCTTGTCTTACCAGCTTCAAGTGACTTGAAAAAAATGAAGC
AGCATCCTTGCTTGAATCTAAACACAAAGAGTCAGGACTTTGTCATTTCT
TTCGATGAAAACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCG
GGATAATCGAAAGCTTTCATCACCTTCAACGCCAGGAATAATGGAAATCA
TTGCAGGGAACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCT
CGTGTTTCAGGAAATGATACTATTAACGTTAAGACAATCCTGTTAACTGA
ACCTCAAATTTCCTGCATCGAAAGCCAGTCGAACTGGAAGATGATTCAAG
CTTCCTATGGCGCTGGCAAATCAATAACTTTACACGAAATTGCAAGGAAA
CTGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCC
ATTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTTGTA
AACAAGAAAAATTGACACAAAAACGAGAAAATCTCATCTCATTATCGCTT
TCTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTC
CTCATTACCATCCAAAAATATTGCAGACGTCATGCTTCTCTTAAAAAACA
AACACAAACATCGAAAAATACATTTCCTTTTTGATGAAGTTCCGCAAGAG
CTGTTCACAAAGACCTACTCGGAAACACTACGTAGCCATTTGGAAAGTGA
ATTTCGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTGTACAGAAATTTC
GAAAGATAACCGAGGAAGGCAAGGTTACCAATTCACAGGAGATTGATTTA
AAAAGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAG
CAGTTGCTTACATAAATTGAAAGAAGTTTTGGAAGGTGAAATCGAAAGTT
CGCCCTGCTCCTTAAACTTAGAAATTCGATCGAAAGCAAAAAGAAGATCG
AGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCTGAAAACG
TTTTTAAGTCGCAGCCACAGACGAGTGAAAACGAAGAAGTCGTGAAAGAA
CTGTCCACTACATATACCTATATGAAAGGGAAATGTGGACATTCTTTCGG
GAGCTTTTTGAAACCACGAATCTTTTATTCCACCAAAGCTTTCACACCTT
TATTTGCTTGGTTCCTTCCGATACTAGCTGCAACCCTCAAGTTCTGTTTG
GATGAGAGAAAGGAGGACGAAGTTGTGGTATTGTGCGAGGATATCTGTCA
AGTAAAAATGGTTCAGTATGCCCTGGAAAGGATACACAAGCGTCCAATTG
CATACGCACCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAGATG
AAGGAAACATTCGTCAAAAATTTGGACGAGATGGAGACCGTTCTGATATC
CGATTATCGGTCTGTTCGTGGATTGGAAATGGCTCATACAATCATCTTTG
TGGATCCAGAAAACGAGGCCAACGCACATTTTCTCGTCGAAGCAATCACA
CGAACCATAACAAATCTTGATGTCATTTCAACGAAACCTTTTTCACAAAA
TGCTTCCACGAGTATCGAGAGAGCTTTCCAAAAATTTGTCGATGGGACTG
AAACGTTTTGCTAACAAAAGACGAATCTAACAATGCCATAATCCAGGAAA
CTCAATCAAATGGAGATGACGAAAATAGGCCAGGTGGCTCTCAATCAACA
ACAAAAGATGAATTTCAGGTTAATGAGAAAACCTTCCCACCCTCGTATTA
CGTACGAAATGAAAACATGAAAGAAGTTATCGCCAGTCTTGAAGAACATT
CATCACTTCTTGGAGGGAAAATTCTCGTCGGATATAATCCCATAAGCCAT
CTCAGAATACTTGGACTCAATGATGAAAAGATCGAGAGTGTTCTGCATTT
TTCTGAGTGCCCTGATCACTATGACAACACAATCGTTTGTATTTATCCGA
ATCATAGCTTGATGTTTGTTTACGTGGTTGGTGAAAACGAAAAACATCTT
GACAAGAATTTGGCGAAAGTCAATGCAGTCTTGAAAACATGGTGTTATGT
TCACAGGCAGATTCTCCAAAATGAACAGTTTACCATTGTTGGAGTTCTTG
TCTTACCAGCTTCAAGTGACTTGAAAAAAATGAAGCAGCATCCTTGCTTG
AATCTAAACACAAAGAGTCAGGACTTTGTCATTTCTTTCGATGAAAACTT
TGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGGGATAATCGAAAGC
TTTCATCACCTTCAACGCCAGGAATAATGGAAATCATTGCAGGGAACATG
ATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTCGTGTTTCAGGAAA
TGATACTATTAACGTTAAGACAATCCTGTTAACTGAACCTCAAATTTCCT
GCATCGAAAGCCAGTCGAACTGGAAGATGATTCAAGCTTCCTATGGCGCT
GGCAAATCAATAACTTTACACGAAATTGCAAGGAAACTGCTGAAAATGAG
CAACCAAGACTTGATTATAAACGTTACTTTCGACCCATTCAGTGCACTAG
ATAAGAAAGTCGACCATTCATTTAACGAGCTTTGTAAACAAGAAAAATTG
ACACAAAAACGAGAAAATCTCATCTCATTATCGCTTTCTGAAGCTGTTGG
TGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCCTCATTACCATCCA
AAAATATTGCAGACGTCATGCTTCTCTTAAAAAACAAACACAAACATCGA
AAAATACATTTCCTTTTTGATGAAGTTCCGCAAGAGCTGTTCACAAAGAC
CTACTCGGAAACACTACGTAGCCATTTGGAAAGTGAATTTCGAGAATCAG
TGGTCGTGATTGCCCTCCAAAGTGTACAGAAATTTCGAAAGATAACCGAG
GAAGGCAAGGTTACCAATTCACAGGAGATTGATTTAAAAAGCTCAGGCAT
GGAACTTTTCAAACTACCAACCACAATGAGGATGAGCAGTTGCTTACATA
AATTGAAAGAAGTTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTA
AACTTAGAAATTCGATCGAAAGCAAAAAGAAGATCGAGAAGCAAGCGAAT
CATTTGACCCAACGAAGCTACGCGACCCTGAAAACGTTTTTAAGTCGCAG
CCACAGACGAGTGAAAACGAAGAAGTCGTGAAAGAACTGTCCACTACATA
TACCTATATGAAAGGGAAATGTGGACATTCTTTCGGGAGCTTTTTGAAAC
CACGAATCTTTTATTCCACCAAAGCTTTCACACCTTTATTTGCTTGGTTC
CTTCCGATACTAGCTGCAACCCTCAAGTTCTGTTTGGATGAGAGAAAGGA
GGACGAAGTTGTGGTATTGTGCGAGGATATCTGTCAAGTAAAAATGGTTC
AGTATGCCCTGGAAAGGATACACAAGCGTCCAATTGCATACGCACCTTAC
CTTACCGGAGAATATCCTCAAGACATCCACAAGATGAAGGAAACATTCGT
CAAAAATTTGGACGAGATGGAGACCGTTCTGATATCCGATTATCGGTCTG
TTCGTGGATTGGAAATGGCTCATACAATCATCTTTGTGGATCCAGAAAAC
GAGGCCAACGCACATTTTCTCGTCGAAGCAATCACACGAACCATAACAAA
TCTTGATGTCATTTCAACGAAACCTTTTTCACAAAATGCTTCCACGAGTA
TCGAGAGAGCTTTCCAAAAATTTGTCGATGGGACTGAAACGTTTTGCTAA
CAAAAGACGAATCTAACAATGCCATAATCCAGGAAACTCAATCAAATGGA
GATGACGAAAATAGGCCAGGTGGCTCTCAATCAACAACAAAAGATGAATT
TCAGGTTAATGAGAAAACCTTCCCACCCTCGTATTACGTACGAAATGAAA
ACATGAAAGAAGTTATCGCCAGTCTTGAAGAACATTCATCACTTCTTGGA
GGGAAAATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAATACTTGG
ACTCAATGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAGTGCCCTG
ATCACTATGACAACACAATCGTTTGTATTTATCCGAATCATAGCTTGATG
TTTGTTTACGTGGTTGGTGAAAACGAAAAACATCTTGACAAGAATTTGGC
GAAAGTCAATGCAGTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTC
TCCAAAATGAACAGTTTACCATTGTTGGAGTTCTTGTCTTACCAGCTTCA
AGTGACTTGAAAAAAATGAAGCAGCATCCTTGCTTGAATCTAAACACAAA
GAGTCAGGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAATGGTTGA
CCAGCTTCTTAAAATTAATCCGGGATAATCGAAAGCTTTCATCACCTTCA
ACGCCAGGAATAATGGAAATCATTGCAGGGAACATGATGGCAAGCATGGC
ACAAACCAAAATCTACCTTCCTCGTGTTTCAGGAAATGATACTATTAACG
TTAAGACAATCCTGTTAACTGAACCTCAAATTTCCTGCATCGAAAGCCAG
TCGAACTGGAAGATGATTCAAGCTTCCTATGGCGCTGGCAAATCAATAAC
TTTACACGAAATTGCAAGGAAACTGCTGAAAATGAGCAACCAAGACTTGA
TTATAAACGTTACTTTCGACCCATTCAGTGCACTAGATAAGAAAGTCGAC
CATTCATTTAACGAGCTTTGTAAACAAGAAAAATTGACACAAAAACGAGA
AAATCTCATCTCATTATCGCTTTCTGAAGCTGTTGGTGAAAGAAGGAATG
TCACCGATTTTTACAACTGTTCCTCATTACCATCCAAAAATATTGCAGAC
GTCATGCTTCTCTTAAAAAACAAACACAAACATCGAAAAATACATTTCCT
TTTTGATGAAGTTCCGCAAGAGCTGTTCACAAAGACCTACTCGGAAACAC
TACGTAGCCATTTGGAAAGTGAATTTCGAGAATCAGTGGTCGTGATTGCC
CTCCAAAGTGTACAGAAATTTCGAAAGATAACCGAGGAAGGCAAGGTTAC
CAATTCACAGGAGATTGATTTAAAAAGCTCAGGCATGGAACTTTTCAAAC
TACCAACCACAATGAGGATGAGCAGTTGCTTACATAAATTGAAAGAAGTT
TTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGAAATTCG
ATCGAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10003MSTRG.10003Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10003.1.p1.exon3MSTRG.10003.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10003.1.p1.exon2MSTRG.10003.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10003.1.p1.exon1MSTRG.10003.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10003.1.p1MSTRG.10003.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000068_pilongenomesc0000068_pilon:901354..904475 -