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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073211 ID=TCONS_00073211|Name=TCONS_00073211|organism=Clytia hemisphaerica|type=transcript|length=1056bpRun BLAST on NCBI transcript from alignment at scaffold_88:27513..36340- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073211 ID=TCONS_00073211|Name=TCONS_00073211|organism=Clytia hemisphaerica|type=transcript|length=8828bp|location=Sequence derived from alignment at scaffold_88:27513..36340- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073211 vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.404e-30 Identity = 88/280 (31.43%), Postives = 152/280 (54.29%), Query Frame = 2
Query: 2 STAQGSIALFTGLGLMAGPAIGSALYQLGNNNFLLPFVVIGSLVWLVILMIAFILPPENVFHDNSEGNTEQSNFWKVFLVPGIFMMSTVTLIAGMVISFLDPTLTPFV-QKLDPELKPFFVGLIFLCAPMTYAISTPFLGRLLDKKIIKGRNASIIGCFLGFICYLFMAPSPLFAFIKTSHLWLTVTSLLCLGFLCLTAMFVPVLADMQITARKAGLPMNLSTDAILSGIYTSMFYIGSIVGPALGAFLTQHLGFPKASTIFAFLLLLEGVCLLSFTLWE 838
+T GS+ F+GLGL+ GP +G LYQ + + +PF+V+G +V L++ + +ILP N E + + +FWK+ +P + +++ V FLDPTL+ FV +K + L +VGL+FL ++YAIS+P G L DK+ + + G + CY+ + P P+ IK+ L + ++ ++ +P ++ A + G LST ++SG++++M+ IG+ +GP LG FL + +GF A+ I L+ G+ + F L E
Sbjct: 164 ATVLGSLETFSGLGLILGPPVGGFLYQ--SFGYEVPFIVLGCVVLLMVPLNMYILP-------NYESDPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLFVLEKFN--LPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPIL-HIKSQLWLLVLILVVSGLSAGMS--IIPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLE 429 The following BLAST results are available for this feature:
BLAST of TCONS_00073211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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