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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072401 ID=TCONS_00072401|Name=TCONS_00072401|organism=Clytia hemisphaerica|type=transcript|length=4488bpRun BLAST on NCBI protein sequence of TCONS_00072401-protein >TCONS_00072401-protein ID=TCONS_00072401-protein|Name=TCONS_00072401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=927bp MSNQENQTVLENLGESFKSFLFSLDDKPSTTIRIFDRGDFFTVHDEDATFRun BLAST on NCBI transcript from alignment at scaffold_77:55524..83061- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072401 ID=TCONS_00072401|Name=TCONS_00072401|organism=Clytia hemisphaerica|type=transcript|length=27538bp|location=Sequence derived from alignment at scaffold_77:55524..83061- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_77:55524..83061- >TCONS_00072401 ID=TCONS_00072401|Name=TCONS_00072401|organism=Clytia hemisphaerica|type=CDS|length=72384bp|location=Sequence derived from alignment at scaffold_77:55524..83061- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072401 vs. Swiss-Prot (Human)
Match: MSH2 (DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1) HSP 1 Score: 952.584 bits (2461), Expect = 0.000e+0 Identity = 487/935 (52.09%), Postives = 672/935 (71.87%), Query Frame = 3
Query: 51 MSNQENQTV-LENLGE-SFKSFLFSLDDKPSTTIRIFDRGDFFTVHDEDATFAAKEYFKTTSVIKEFGKGNKKTL-SVTLSKMNFENFVRELLLVRSYRVELYRSKGKNV-----NWELVARASPGNLQQFEDVLFKNNVMSESSIVLSVKLTTSETGDQTVCCAFTDISERIIQLLEFGDNDQFSNFEVLLMQVGAKECLVTKQDLQNNC--LKVVLDRSNILVTETHKADYNSSNILQDLNRLLK-KSNDNETVASMPELELKGAVCCISSLIKYLELLSDETIFGQLVLKKFDLTQYMHLDSAAVRALHILPTSLDGGNKSVSLYGLLNQCRTSQGQRLLAQWIKQPLLDIAKMEERLDIVDAILHDMELLQELQENALKKLPDVSRLAKRFHSRKATLQDCVRVYQGVRQLPGIVNILKEHDGEHKTMIEEVFMKPLQDITTDFNNYMEMIETTMDMNLVEQNEFVIKAEFDESLAECKENIDQVTEQFDGVLLKAAKQLNLEAGKTIKLDNNSQLGYYFRITXXXXXXXXXXXXFYTLETRKDGVRFTNSTLKDLSEQLMSHKALYNELQSTLAKEVLNIAWGYAEPLRSFASIIAYLDVLLSFAVVAAQAPTQYVRPTLYEKGAGKIILKGSRHPCLEVQDGIGFIPNDVTLTKDEQELLIITGPNMGGKSTFIRQVALTTLMAQIGCFVPCTSAEITITDRILARVGAADSQLKGVSTFLSEMLETKTILKSATKDSLVIIDELGRGTSTYDGFGLAWAISEFIATEIHAFALFATHFHELTSLSDDVAVVANYHVSALTTNKQLTLLYKVKPGVCDQSFGIHVAEMVNFPKHVIEYAKRKSKELEDFHQDEETNSEGFVRTEKSEVEAKKRRLDKKEGEKLVHDFLVKLREKDKEGLSDDDLANHIQNELLNLKQSGNKYIEQIINK 2822
M+ Q +T+ LE+ E F F + +KP+TT+R+FDRGDF+T H EDA AA+E FKT VIK G K L SV LSKMNFE+FV++LLLVR YRVE+Y+++ N +W L +ASPGNL QFED+LF NN MS S V+ VK++ + G + V + D +R + L EF DNDQFSN E LL+Q+G KEC++ + + L+ ++ R IL+TE KAD+++ +I QDLNRLLK K + A +PE+E + AV +S++IK+LELLSD++ FGQ L FD +QYM LD AAVRAL++ S++ S SL LLN+C+T QGQRL+ QWIKQPL+D ++EERL++V+A + D EL Q LQE+ L++ PD++RLAK+F + A LQDC R+YQG+ QLP ++ L++H+G+H+ ++ VF+ PL D+ +DF+ + EMIETT+DM+ VE +EF++K FD +L+E +E ++ + ++ L+ AA+ L L+ GK IKLD+++Q GYYFR+T KEEK LRNN F T++ +K+GV+FTNS L L+E+ +K Y E Q + KE++NI+ GY EP+++ ++A LD ++SFA V+ AP YVRP + EKG G+IILK SRH C+EVQD I FIPNDV KD+Q IITGPNMGGKST+IRQ + LMAQIGCFVPC SAE++I D ILARVGA DSQLKGVSTF++EMLET +IL+SATKDSL+IIDELGRGTSTYDGFGLAWAISE+IAT+I AF +FATHFHELT+L++ + V N HV+ALTT + LT+LY+VK GVCDQSFGIHVAE+ NFPKHVIE AK+K+ ELE+F E S+G+ + E AKK L++++GEK++ +FL K+++ +S++++ ++ + N ++ +II++
Sbjct: 1 MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVD-GQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGE--SQGY---DIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISR 929 The following BLAST results are available for this feature:
BLAST of TCONS_00072401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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