|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072261 ID=TCONS_00072261|Name=TCONS_00072261|organism=Clytia hemisphaerica|type=transcript|length=962bpRun BLAST on NCBI transcript from alignment at scaffold_72:32975..112954+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072261 ID=TCONS_00072261|Name=TCONS_00072261|organism=Clytia hemisphaerica|type=transcript|length=79980bp|location=Sequence derived from alignment at scaffold_72:32975..112954+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072261 vs. Swiss-Prot (Human)
Match: MACD2 (O-acetyl-ADP-ribose deacetylase MACROD2 OS=Homo sapiens GN=MACROD2 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 8.789e-37 Identity = 81/200 (40.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query: 349 ELARKFLKLPTKEKRKMLNGKVVPLGFVPIYISSPYSLK-----TEKSTKFSAD--RIINNKISLWNGDITYLEVDAIVNPTGEGLVCYGGVDGAIRRVAGPTLFKELSQFSGCAPGEAVFTGGHMLPARYIIHTVGP------RKLQKNVLQRAYKNILELVRRKNIKTVALPCISSGDFGKPNKEDAEVALQSIRDWL 909
E + LK+ +E+RK +PL + +S +K E++T+ ++ + + K+SL+ GDIT LEVDAIVN L+ GGVDG I R AGP L E +GC G A T G+ LPA+Y+IHTVGP K L YK+ L+LV+ NI++VA PCIS+G +G PN+ A +AL +I++WL
Sbjct: 13 EEKERLLKMTLEERRKEYLRDYIPLNSI---LSWKEEMKGKGQNDEENTQETSQVKKSLTEKVSLYRGDITLLEVDAIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNLNGCDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNIRSVAFPCISTGIYGFPNEPAAVIALNTIKEWL 209 The following BLAST results are available for this feature:
BLAST of TCONS_00072261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.