TCONS_00071419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071419
Unique NameTCONS_00071419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071419 ID=TCONS_00071419|Name=TCONS_00071419|organism=Clytia hemisphaerica|type=transcript|length=2211bp
aacAATTATTATTACTTCCAAAAACAAGGAGGATACCCTTGGTGGGAAAA
GTGATGTGACTAAAAGGAATAAAGCAATAGTGTTTGTGGAAAATGAAATC
TTTTCATTGAAATAACACTGTAGTCAGGCAAAGATTTTGTCGATATAATT
TTCACCAAGGCATAAATATGCTACGTCCTAATATGAATGAAACGTAACTC
CCTCATCGTAACAACATGCGTGTTATTGAAGCGAAGATTGCAAAACAAGA
ATTCTTATCATGTGTAGACCACCAGTTTTGTTTCTGTAAAGATTGCGTCA
TCCTTGATGGCCGTGCTGCTAAAAAGGCTGATGGGAAATGTGGTTGTAGT
GAAATGACCCAAGATTCAACAGACCTCCATAAGGTGTCATGCGGGTCAAT
GCCTTCAACGAGCGAACCGAACGATGATTCTTCTGAGTTTGATATCACTA
CTATGATGAAGACCTCTTCAAAAGTCATGAAAGCTGAACCCTCCCATTTC
GAACTTCTCAAGGTTCTCGGTCAAGGATCCTTCGGAAAGGTATTCATGGT
TCGAAAGATCGTCGGACATGATATCGGGCATATTTATGCCATGAAGGTCC
TAAAGAAGGCTACACTTAAGGtgcGTGATCGAGTACGAACGAAGATGGAA
AGAGACATTTTAGCGGATGTCGCTCACCCATTTATTGTGAAACTACACTA
CGCATTTCAAACGGCTGGCAAATTATACTTAGTATTGGAATTTCTCCGTG
GAGGAGATCTGTTTACCAGACTTTCCAAAGAAGTCATGTTCACTGAGGAC
GACGTCAAAATCTACCTCGCTGAATTGGCCATGGCTTTGGACCATCTACA
CACCTTAGGAATTGTTTATCGTGATTTGAAACCAgaaaaTATCTTGTTAG
ATGTCGATGGCCACATCAAACTGACAGATTTTGGATTGAGCAAAGAGTCT
ATCTTTGATGTGGAGAAGAAAACGTATTCGTTTTGTGGAACCGTCGAATA
CATGGCACCCGAGGTCGTCAATCGAAGGGGTCATGGGACGGCCTCTGATT
GGTGGTCATTTGGTGTCCTCATGTACGAAATGTTGACGGGTGCTCTACCC
TTCCAAGGAGCCAACCGCAAGGATACCATGACCATGATTCTAAAagcaaa
actCGGCATGCCACAATTTTTGAGTGCAAACGCACAACTTCTGCTTCGTG
CTCTCTTCAAAAGAAACCCACAAAATAGATTAGGGTATAAAAATGGCTTA
GCTGAAATCAAAACGCAGGCATTCTTCGCAAACATCGATTTTGACcTGTT
ATATAAGAAAGCCATTCATCCTCCTTTTAAACCGGCCGTCTCTCGAAATG
ATGACACTTTCTACTTCGATAAAGAATTTACTTCAAGGGATCCTAAAGAC
TCTCCCGCCGTTCCGCCGAGTGCCGGTGCCAACCAATTGTTCCGTGGCTT
CAGTTATGTTGACCCATCCGCCCTAACAGAAGTACCAGAGGAAGCGATGG
AATTGGTGAACAACTTGAACGGTGGCGGTGGTGGTGTATCGTCAAGTGAT
TACGTACCCACTGCTTCAACCACTGTCAAAAATATCAACGATGATTATGA
CATCAAAGAGGAGATTGGTGTGGGCGCATTTTCGGTCTGCAAACGATGCG
TTCACCGATCATCGGGCAAAGAATATGCTGTCAAGATTATTGACAAAAGT
AAACGAGACCCCTCTGAAGAAGTCGAGATTTTGCTTCGTTACGGCCAACA
TCCAAACATTTGCACCTTGCGCGACGTGTACGAAGACGCACGTAGTTCAT
ATCTCGTAATGGAACGTATGGTCGGTGGGGAACTCCTCGATAAAATCTAC
CGTCAGAAGTATCTGTCGGAGAAAGAGACCGCCTACATTATGGATGTCTT
GACCAAAACAATTGACTACCTTCACCAGCAAGGTGTTGTTCATCGAGATC
TCCAACCTTCCAACATCCTCTTCGCAACGGAGAATTGTACGCCAGAATCC
ATACGTATCCTGGATTTCGGATTCGCCAAACAAATGCGTGCTGAAAATGG
TCTCCTCATGACACCCTGTTATACTGCCAATTTCGTTGCTCCTGAGGTGT
TGAAGAAACAAGGTTACGATGCTGCTTGTGATATCTGGTCTCTTGGTGTC
CTTATGTATACCATGTTATCTGGTCGAACACCATTTGCCACCGGCCCCGA
AGATACACCGA
Run BLAST on NCBI

transcript from alignment at scaffold_60:1276257..1287075-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071419 ID=TCONS_00071419|Name=TCONS_00071419|organism=Clytia hemisphaerica|type=transcript|length=10819bp|location=Sequence derived from alignment at scaffold_60:1276257..1287075- (Clytia hemisphaerica)
AACAATTATTATTACTTCCAAAAACAAGGAGGATACCCTTGGTGGGAAAA
GTGATGTGACTAAAAGGAATAAAGCAATAGTGTTTGTGGAAAATGAAATC
TTTTCATTGAAATAACACTGTAGTCAGGCAAAGATTTTGTCGATATAATT
TTCACCAAGGCATAAATATGCTACGTCCTAATATGAATGAAACGTAACTC
CCTCATCGTAACAACATGCGTGTTATTGAAGCGAAGATTGCAAAACAAGA
ATTCTTATCATGTGTAGACCACCAGTTTTGTTTCTGTAAAGATTGCGTCA
TCCTTGATGGCCGTGCTGCTAAAAAGGCTGATGGGAAATGTGGTTGTAGT
GAAATGACCCAAGATTCAACAGACCTCCATAAGGTGTCATGCGGGTCAAT
GGTGAGCTTTGAATGCGGGATAGAACCTTCATTAATTTGAATTTTTCTCG
GTTTTGTTGTTATAAATTTTTCTCGGTAGACAGGGATTATTTTTTCGGAA
ACTGATTTTGAAATTAACAAAGGGGGAGAGCTTCGAACCTATCGAAATAA
AGACATAAATTATAATTTTTCGTGCTAGTTTAGAGAAAAGCTAGCACTTT
CCACATCTTCAGCTACCATTTTGATAAGTTGGACAGGAAAAAATTTCTAT
TAATCTTGATACTGATAGGAGATGTCTTTTCGAGTTTTCTTAAAGCTTGT
TTGGGGGAGAAACCAATGAAATTGTAAATGAATTGTTTGCACAATTTTAC
ACTTTTATTAAGATAGCTACACGTTTTTTTTTTATAAGAACGTTAAAAAT
TTTCGAAGCCTTCGGATGTTCTTAGTTTTTTGGATTTGAAGCCTAAAAAT
GTTCTTAAAATGTTCTTATTTTCAGCATTTTTTGAGCATTTTGATGTAAT
TTCTTAAGAAAATGCATGTTTTTTAAGTCTCCAAAGCCTTAGAATGTTCT
TAGAATGTTCTTAAATTTTTGAGCCTCGAAGCCTTATGTTCTTATATAGT
TTGTTCTTATAAAAAAAACGTGTATTCCACCTGATGTCATTTGAAAATAC
GGAACTTCTTGATGATATAATGTTATTCCATTGAAATGTATTCAAGAAGT
AATTCCATCCTACAAACTACCATATTTAGTCTATCCCCCAAAAAATAAAC
TCATATCATGATGTTATCAAGATCATGTCAAAATATTTTTTTTCATTAGA
GAGAGAGAACTTCTACTCATTTTCACATTTTCCCCTTTCTTTTCATCTTC
AGCCTTCAACGAGCGAACCGAACGATGATTCTTCTGAGTTTGATATCACT
ACTATGATGAAGACCTCTTCAAAAGTCATGAAAGCTGAACCCTCCCATTT
CGAACTTCTCAAGGTTCTCGGTCAAGGATCCTTCGGAAAGGTAAGAACAT
TTATGAGTTGAGAGTGTCACTGGATCCTTTGGTTTTCTGAACAGTTGGGT
GGATTAGCTCAACGATATTATTTCTAAAAGTGATAGAGCTGATATTTTGA
ATTTTGGCACTCTTTGAAATTGCCGCGACCACCAGTAGCAACCAAAAGTT
TCTTTGGGAATTAAAGAAAACTATTAGCACCAGCGTTGAGGGCAAAATTT
TAAAACATGTTTTACATAGGGGGTTTAAATGCTTATTTGTCAAAAGTTAT
AAGGGTTTGAAATTTAATGATGACTACATATTTTCAAAATTGATTTCTAG
GTATTCATGGTTCGAAAGATCGTCGGACATGATATCGGGCATATTTATGC
CATGAAGGTCCTAAAGAAGGCTACACTTAAGGGTAATTATTAATCATCTT
TGCTCATTTCGGCCTTTACAGTGCACTTTTGGAAGCTTGAATAAGGGACC
CTTAAGGGTTGCACGTACGGTCGGTCGTTTACTGTTTACTTTGGAGTGGT
GCCCCCCCCGGAGGTCTGCCTCAAAGTCAAATTTCTTTCTTTCCCCAACT
TCATCTAAATAAAGTACAAAAATACATCTAAACCCTTATACACTTACATA
TATCAGAAACTTGGGCACAAGCAGGCACAAGTGGTCGACTATACAGGAAG
GCACACAGTATGATCTACATGCTATTTTCAGTTCTTGAAATGAACTCGGC
ACTCCCTAGACCTATAGCTGAAAAATATAACTCTCTATTCATGCATTATC
AAGGAGGTCAGGGGGGGGGTCTTGCAGTTACTCCTTGACACTATGTGGAG
TAACTGCAATTTTGGATATTTTCTACAGACACCACCACCCTTGCAGTTAT
TCCATAGTGTACTAACTGATTTTACCCTCAAAATTGGTGTATACCACCCC
CAAAAATGCCAAATTTGGCAATTTTTTCACTGAATTCCTCATTTTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTGGGTACGTCTTATTAACG
ACCGTTCAAGAGTTAAATATCTCAATCATTTTCCAAGTTTGTTAAAATAT
CTTTCATGCCTTGATTGAAGAAAAAAAATCTTATTTTTGAAAAAAATTTT
TTAATTTTTTGCTTCTGGAATTTTTAATAACCTAAAATTTTAAGTGAAAA
ACTGAAAAATGTGCTCACTTAGTACACCATATCCTACCAAAATCGACAAT
TTTGGGCTTAGGCACCACCCATGTTGCAGTTAGTCCACTGGTGGAGTAAC
TGTTTTCCCAAATTTTGGTTTATATACCACCACGGTAGTAATTGTCATAG
TGTTTATATAATAACTGCATGACCCCCCCCTGAGGAGGTGAACTAATGAA
AGACTGTGAGTTTCTTTGAATATTTTTCTTTTAGTGCGTGATCGAGTACG
AACGAAGATGGAAAGAGACATTTTAGCGGATGTCGCTCACCCATTTATTG
TGAAACTACACTACGGTAACTATACTAAAATTTCACAAAATGATTATCTT
TTTCAAAATGTTGAGAGTCAGGAAACCTCTCATAATTCGGACCTTATAAT
TTGAATTACTGTTTAACTGTAACTCGAACTTCTCGTAAAATACCTGGTAA
ACGACTTTCTTCAAGTTAAAAACTCTCAATACCTGAAGCAGATTTTTGGT
TTTCCAATGAGCGTATTGTATAAAAATCATTTATTGAATTTCAAATTTAC
TTCTGTTTCTTTAGCATTTCAAACGGCTGGCAAATTATACTTAGTATTGG
AATTTCTCCGTGGAGGAGATCTGTTTACCAGACTTTCCAAAGAAGTCATG
TTCACTGAGGACGACGTCAAAATCTACCTCGCTGAATTGGCCATGGCTTT
GGACCATCTACACACCTTAGGAATTGTTTATCGTGATTTGAAACCAGAAA
AGTATAATTTTTTTTTGTTTACTGCTGTATGTACCAGACCCGATTCGTGA
TATTCATGACGTAATGTTTTACACGGAAGCACTGGGAAAAGTTCGGTTGA
TACGCACTAATTCTAATTTTAGATAATAAAACTAGTTGCAAACGCCCGGG
CTATTTCAGGTGCTCCCGTATAAAGCTGTACATCATGAATATCATGAATA
ACTGAAATGGAAGTTTTAAAATTCATTTCTGTAGAAGGTGTATTGCTTCT
GTCGTTTGTGTTTGTGATTTTGAGCCCCTTTCTCTCTCTACTTCACAATA
AACACTTTTTCTACATAACACTGTTGGCAAAATAGATGTTTAGCGAAGGA
TGTAAATTCAATTCAATATTATCATCCCTTTGTTCTGTAAGGGAGGCTTT
TTCAACAAGAATTGAATTTCTCCCATTTATCTCTTACATGGCATGGACCA
GGGGTTTAGGTACCCCCTAAGAAAATAGGTACCCCCTGAATTTTAGGTAC
CCCCAAACAACAGACGTTAGTAGGTACCCCCTGGGATTGGTACCCTCTGT
GACTTGAGTATATGTCAAGAAATGAAAAAAATTGTATATTTTTACAATTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCC
CTGCGGGCCGGGGGGGGGTTCATGCCGTGTCTTATTGATGCTGACCCTAA
TAATTGATCTAAATACTGAATTTTTCTTTCATAGTATCTTGTTAGATGTC
GATGGCCACATCAAACTGACAGGTACGTGGAACGATCAGCAAAGTTTCCC
ACCGCCTTCATACGTTCAAGATTGCTTGCTAAACAGTTTTGCACTCATTG
ACTCAAATTATTTTGAACGTGTATTAAAGGATGCTTATTAAGGAATTTAT
AAACTCGGGACAAAGCTACATCACAAGTGTTCAAGAAAAAACGGTCTACC
ACTCTCGATTCATTACTGAGTAGTGCTTCTTTATTAGGGTGCAACTTTGT
CTCAGATACGGCCTCCAGAGTTTAACGTATTTAACGTTTAACGAATTTAA
CCGTGATTTTTCTCTTTCAATTAGATTTTGGATTGAGCAAAGAGTCTATC
TTTGATGTGGAGAAGAAAACGTATTCGTTTTGTGGAACCGTCGAATACAT
GGCACCCGAGGTCGTCAATCGAAGGGGTCATGGGACGGCCTCTGATTGGT
GGTCATTTGGTGTCCTCATGGTAAATACACCGATTCACTTTATGATCTGA
ACCCACTAAAGAGTGTTTTAGCAATTCTCAAAATTATATTGTAGAGTGCA
TATCAGGATTAAGATGACGATTTAATTTATGATCTCATGAAATTTGCTGA
TCTAAACCACTGTTTTAACTACAAAATTTTCTAGTGGTGTGCATATCATG
ATTAAAGTGCCTTTAACTTGACTCGCTTAATATATTATCTTGCCCAACCA
AATGAATAAAGCACTGTTACAAACGAGCCTTGCACTTGTTATTGAAATTC
TTAAAAACTACAAGTTGTCTCTTCTCTTGTAGTTTATCGCATTAAAGGGT
TTGAGTTTAGTGACATTTTCAAATCTTATTTTACAAACTTTCAGTACGAA
ATGTTGACGGGTGCTCTACCCTTCCAAGGAGCCAACCGCAAGGATACCAT
GACCATGATTCTAAAGTGAGTTTTATTTTCATTTTCTTGACTTATTTATA
ATTTTTTTGTGGTTCAATCGAAATTACATCTAAAATCTTACCTTGGCTTA
GAAGTGCGAGAAAAGAAGCTTCAATATCAGGCTCGAAAATATAAAACCTC
ACCTTTTCCACTACACCCTTTGCGATTTACCGAGTCACGGGTCGTTTTAG
GGAGAATAAATGGCCTCACATACATAGTGAAAGGTGGAAGTAAAGCCTCC
TCAAACATGACAAACAATTAGGACACGACCTAAAAGGAGGGTTGAAAGTA
AAGTGTACATTTTAACGACAAGAAGTTGTAACACAAAATCTGTTTATACC
TTCGTTCTTTCTCTCTTTTAGAGCAAAACTCGGCATGCCACAATTTTTGA
GTGCAAACGCACAACTTCTGCTTCGTGCTCTCTTCAAAAGAAACCCACAA
AATAGATTAGGTATGGTGTTTTGTGATTGAAACTGGATACACCTTTTCTA
TAATTCTACCTAAAACTGTCAATGTTCATGTATAATAATTTGAATTGGTC
AAGCTCATTCATTACCCCTATGTTCTCTTTCATTTTGGGGTAACACGATT
TCAACTCTTCTTTTTAGGGTATAAAAATGGCTTAGCTGAAATCAAAACGC
AGGCATTCTTCGCAAACATCGATTTTGACGTACGTATCACCTTTCAAGGA
TAAATCTTCCAATTCTTTTGATTCTGCACTAGAGTTTGTTTTATTTGAAC
ATGCTATAGAATATTAAGGAAGGCTAGGGAAAAAATGTCCTCTGCATAAA
CCAGTGCAAATCGTGCCACGCTCATGAGTTATGTTTTTAACGTAGCTCTA
CACATTCGCACGCGTTACGGATTTACACCTTTTAGGATTATACCTGCTAT
ATTATAAGACGCTATTTACTTCAGCAGTCATTTGCTCTTCTGCAATTCTT
GAATTTTAATTTTGTTTTTATTTATTTTCTTTTTGTAGCTGTTATATAAG
AAAGCCATTCATCCTCCTTTTAAACCGGCCGTCTCTCGAAATGATGACAC
TTTCTACTTCGATAAAGAATTTACTTCAAGGGATCCTAAAGGTTAGTTTG
CTTTTCTTTAAATTCTGTATATACAGGCACGACGGAAGCTTTTTATATCT
GGTACGGCGAATGAGGAAATTTAAGCGATTTTATAGCGATTTGACCGACG
AAGAGGAAAATTTCGGGTATTTTTGTGAAATCTGGTACGGCGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCTGCCGTACCCGTTGCGTCGTGCCTGATAT
AAATACTGTCGTTTTTGGCTAAGATTCCACTCCCCGTATACCGTTCCACT
TCTCGGGCTAAAATTCAGGTATGGAAAGTAGCCTTTTTGAATTGAGAAAT
TGGGTGTGGAGTTTATTTCCACACAAGGAGGGCTTGCTGGTCTTTGTCTG
CTTGAGACGAATTGTAGAATCTTAGTTCGGAAAGTGCATATTACCGAAAG
CGGCGATCTAATATGTAAAGACATATACCACTAATTTTATCAGGTGGAAT
TTTTCAGTCACCAAGTCAAAGTAATAAAATATTTTCACAATTTACTGATA
AGTAATTCTGATTACAATTTATTTTTTCTTTGTATCCGATTCTAAATTTT
CTATTTTATTCTAGACTCTCCCGCCGTTCCGCCGAGTGCCGGTGCCAACC
AATTGTTCCGTGGCTTCAGTTATGTTGACCCATCCGCCCTAACAGAAGTA
CCAGAGGTAAAGTAACCAGCGCTTCATCTGGTTCTAATGGGAAAAAATCG
ACAAATGTTGATTAATATAAAGTCTCCTCCAGCTACTAGGCTCTCATTTC
GATGATCGAGGAGTCGCAAATCTAAATATTAAAATTGAAGTAGGTTATGG
AAGAGGAGGAGGGGTTTATGTTAAATAAATACACATGAAATACAGTCTCT
ACTCATGTCTACTGGTTATTATAGTAAAATTAATATTCACTAGATTAAAT
TTATTGTATTTACGTTTCCGAAAATTTGCATCAAGAATGTCGCGAAAAAT
ATATCAAAGTAAACAAGCTTTGTTTCTTCATTTTTATTTTCGATCACTTG
AAGAAAATATTTGTCATAAAGAAAAAGTCACTTTAATTTCAAAGATTTTG
ACATTTTGTTACATCCGTTATAGGAAGCGATGGAATTGGTGAACAACTTG
AACGGTGGCGGTGGTGGTGTATCGTCAAGTGATTACGTACCCACTGCTTC
AACCACTGTCAAAAATATCAACGATGATTATGACATCAAAGAGGTTTGAA
TAGATTTTTCAATTTTTCAAATTCGTTTTTCATTTGAATCAACTTTCTTA
TACGTTGCTGATCTCTGTTATGGCACAAACTCCTAAAAAAGCTTTATTCA
AGCCTCAGTTTTAATTAAAATCAAGCTTGAGCTCTAGTACCGAGGGACTA
TTTGTAGACAATCTGGAAATTCTTTAAAGGTTAATAAGATGATTCAGTTG
TTCCCTTATTTTCTAAAAAGGCAGAAACTTCCAGCGGACAATTCGCCGAT
TGTGTTGGCGTCCGCTTATTGAAGATAAGAATAGGTGGTCATTGATGATA
CTTTTACGATTTCAGGAGATTGGTGTGGGCGCATTTTCGGTCTGCAAACG
ATGCGTTCACCGATCATCGGGCAAAGAATATGCTGTCAAGATTATTGACA
AAAGTAAACGAGACCCCTCTGAAGAAGTCGAGGTTTGTACGGTTTTTCTT
TTCTCCTTCCGTAACGCCCTTTTATACAAGAGATTTCTGACTAATTATTC
TTCAATACACGGGTTGCAAAATTATATCGGTGCAGTCAAAACGTTTGATT
AAGTTCACGTGATTTTATTCCCATGTTACTTGCTTTACAACTTACAATTA
ATGATAATGATAATGACTTATGATTGACCCTTTAGATCTATTGATCTAGA
AAACTATTATGGTAAAGAAGAGATTTGACTTGAAAGTGTGCTCGCATATT
TAAAGACCTTTTCCTAATGACGTTTTCATGTTGAATAATTAAAAACCCTA
GCAGACTCTAACATCAAAACAATGACCAGAAAAAGTGCGTACATTTATTA
ATTATACATCCACATGTGATTGTTTTAAAACTGGAGTTTTTAATCATTCG
ACATACATCGTGTTCAGGAAGAGGTCTACTCATATACAGTTAGATTATGG
TAATGCCCTAAACTACTTTATCATTCTGCTGAAATTTTAGCCATGAAAAT
GAGTTCCAAGGATTTTCTCATTCGTTTTAGATTTTGCTTCGTTACGGCCA
ACATCCAAACATTTGCACCTTGCGCGACGTGTACGAAGACGCACGTAGTT
CATATCTCGTAATGGAACGTATGGTCGGTGGGGAACTCCTCGATAAAATC
TACCGTCAGAAGTATCTGTCGGAGAAAGAGACCGCCTACATTATGGATGT
CTTGACCAAAACAATTGACTACCTTCACCAGCAAGGTGTTGTTCATCGAG
ATCTCCAACCTTCCAACATCCTCTTCGCAACGGAGAATTGTACGCCAGAA
TCCATACGTATCCTGGATTTCGGATTCGCCAAACAAATGCGTGCTGAAAA
TGGTCTCCTCATGACACCCTGTTATACTGCCAATTTCGTTGCTCCTGAGG
TTCGTTTGCTTTGTGTATTTTCTTACAAGACGGGTAATGACTTTTTATAT
GTTCAAGAATCGAGTCTGGTGAGTGTTAATGGCTTCTACTCACTTTTCAA
TCAATTTCAACATCATTTAATTAAAGTAATTAAACTTTCTGATGTGTTAA
AATTTATCCAAACAGCTAATTTCTACAGTGAAGTAAGTCTTTCCAATGAG
AATCGCTTTATAGTTTGAATCCTTCTTTCTTTCGAAGAAAACAGATGTTC
CCCTTGCCTTCCGAGCTCGATATAGGGAGATCAAATAATAATATCTTATA
TAATAACTTGTACTAATCATTCTTTCAGGTGTTGAAGAAACAAGGTTACG
ATGCTGCTTGTGATATCTGGTCTCTTGGTGTCCTTATGTATACCATGTTA
TCTGGGTCAGTAAAAAGTCCTTCTCTTCATTCCACCCTGGAATCCTTAAT
TAACATTTGTTGTTATCGAGAGTTTTCGACCTAGGAGTTGTTTTCACAAC
GTTATTTAAATTCGAGTTTTTATGAAGCTGTCATATTTGCGAAAAAAAAT
CTCTCGAAATCGCTTGAGTATACTGACTCACGGAATTGTGTTGGGTGCAA
AAAAAATAAAACACAACATTGGCGTTGTCAGGGCCATTGTCAACTGATTT
CAAAATCATTCTAGAAATTTAACCTAGAAAGTTTCCCAAAAATTAACCTG
ATTAAAATAAGCGAAGTCTTGAACAAAGTATTATAAATGATTAACCATCA
GAGTCAAATAAATAGCGTGACTTTTCATGAGGCAGGCCTGGGCAGGCCGC
CATGTCATCTTTTAAAAGAATGCACTAAAAACCTTAAATAATTTCCATAT
TTTTGATATGATTCTCTTTCAACTTTTCCAGTCGAACACCATTTGCCACC
GGCCCCGAAGATACACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044365XLOC_044365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071419-exon-scaffold_60-1575043694:1286675..1287075TCONS_00071419-exon-scaffold_60-1575043694:1286675..1287075Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1285686..1285823TCONS_00071419-exon-scaffold_60-1575043694:1285686..1285823Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1285294..1285375TCONS_00071419-exon-scaffold_60-1575043694:1285294..1285375Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1284211..1284291TCONS_00071419-exon-scaffold_60-1575043694:1284211..1284291Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1283775..1283961TCONS_00071419-exon-scaffold_60-1575043694:1283775..1283961Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1282754..1282791TCONS_00071419-exon-scaffold_60-1575043694:1282754..1282791Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1282306..1282451TCONS_00071419-exon-scaffold_60-1575043694:1282306..1282451Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1281861..1281931TCONS_00071419-exon-scaffold_60-1575043694:1281861..1281931Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1281416..1281504TCONS_00071419-exon-scaffold_60-1575043694:1281416..1281504Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1281197..1281258TCONS_00071419-exon-scaffold_60-1575043694:1281197..1281258Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1280785..1280887TCONS_00071419-exon-scaffold_60-1575043694:1280785..1280887Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1279070..1279161TCONS_00071419-exon-scaffold_60-1575043694:1279070..1279161Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1278533..1278652TCONS_00071419-exon-scaffold_60-1575043694:1278533..1278652Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1278094..1278210TCONS_00071419-exon-scaffold_60-1575043694:1278094..1278210Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1277177..1277545TCONS_00071419-exon-scaffold_60-1575043694:1277177..1277545Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1276771..1276847TCONS_00071419-exon-scaffold_60-1575043694:1276771..1276847Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1575043694:1276257..1276294TCONS_00071419-exon-scaffold_60-1575043694:1276257..1276294Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1286675..1287075TCONS_00071419-exon-scaffold_60-1510915933:1286675..1287075Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1285686..1285823TCONS_00071419-exon-scaffold_60-1510915933:1285686..1285823Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1285294..1285375TCONS_00071419-exon-scaffold_60-1510915933:1285294..1285375Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1284211..1284291TCONS_00071419-exon-scaffold_60-1510915933:1284211..1284291Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1283775..1283961TCONS_00071419-exon-scaffold_60-1510915933:1283775..1283961Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1282754..1282791TCONS_00071419-exon-scaffold_60-1510915933:1282754..1282791Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1282306..1282451TCONS_00071419-exon-scaffold_60-1510915933:1282306..1282451Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1281861..1281931TCONS_00071419-exon-scaffold_60-1510915933:1281861..1281931Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1281416..1281504TCONS_00071419-exon-scaffold_60-1510915933:1281416..1281504Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1281197..1281258TCONS_00071419-exon-scaffold_60-1510915933:1281197..1281258Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1280785..1280887TCONS_00071419-exon-scaffold_60-1510915933:1280785..1280887Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1279070..1279161TCONS_00071419-exon-scaffold_60-1510915933:1279070..1279161Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1278533..1278652TCONS_00071419-exon-scaffold_60-1510915933:1278533..1278652Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1278094..1278210TCONS_00071419-exon-scaffold_60-1510915933:1278094..1278210Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1277177..1277545TCONS_00071419-exon-scaffold_60-1510915933:1277177..1277545Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1276771..1276847TCONS_00071419-exon-scaffold_60-1510915933:1276771..1276847Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1510915933:1276257..1276294TCONS_00071419-exon-scaffold_60-1510915933:1276257..1276294Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1286675..1287075TCONS_00071419-exon-scaffold_60-1491911889:1286675..1287075Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1285686..1285823TCONS_00071419-exon-scaffold_60-1491911889:1285686..1285823Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1285294..1285375TCONS_00071419-exon-scaffold_60-1491911889:1285294..1285375Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1284211..1284291TCONS_00071419-exon-scaffold_60-1491911889:1284211..1284291Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1283775..1283961TCONS_00071419-exon-scaffold_60-1491911889:1283775..1283961Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1282754..1282791TCONS_00071419-exon-scaffold_60-1491911889:1282754..1282791Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1282306..1282451TCONS_00071419-exon-scaffold_60-1491911889:1282306..1282451Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1281861..1281931TCONS_00071419-exon-scaffold_60-1491911889:1281861..1281931Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1281416..1281504TCONS_00071419-exon-scaffold_60-1491911889:1281416..1281504Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1281197..1281258TCONS_00071419-exon-scaffold_60-1491911889:1281197..1281258Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1280785..1280887TCONS_00071419-exon-scaffold_60-1491911889:1280785..1280887Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1279070..1279161TCONS_00071419-exon-scaffold_60-1491911889:1279070..1279161Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1278533..1278652TCONS_00071419-exon-scaffold_60-1491911889:1278533..1278652Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1278094..1278210TCONS_00071419-exon-scaffold_60-1491911889:1278094..1278210Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1277177..1277545TCONS_00071419-exon-scaffold_60-1491911889:1277177..1277545Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1276771..1276847TCONS_00071419-exon-scaffold_60-1491911889:1276771..1276847Clytia hemisphaericaexon
TCONS_00071419-exon-scaffold_60-1491911889:1276257..1276294TCONS_00071419-exon-scaffold_60-1491911889:1276257..1276294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1276257..1287075 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.543088	0.818196	1.31309	0.62482	0.588586	0.46379	2.07956	1.57812	0	1.7563	0	0.483517	5.35513	3.32816	3.90448	4.39993	6.64228	13.8026	0	0.662873	3.19425	1.02974	5.7671	3.37744	10.6788	10.6232	30.2825	25.9326	7.70017	7.67511
Blast
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BLAST of TCONS_00071419 vs. Swiss-Prot (Human)
Match: KS6A3 (Ribosomal protein S6 kinase alpha-3 OS=Homo sapiens GN=RPS6KA3 PE=1 SV=1)

HSP 1 Score: 865.529 bits (2235), Expect = 0.000e+0
Identity = 420/594 (70.71%), Postives = 488/594 (82.15%), Query Frame = 3 
Query:  435 EFDITTMMKTSSKVMKAEPSHFELLKVLGQGSFGKVFMVRKIVGHDIGHIYAMKVLKKATLKVRDRVRTKMERDILADVAHPFIVKLHYAFQTAGKLYLVLEFLRGGDLFTRLSKEVMFTEDDVKIYLAELAMALDHLHTLGIVYRDLKPENILLDVDGHIKLTDFGLSKESIFDVEKKTYSFCGTVEYMAPEVVNRRGHGTASDWWSFGVLMYEMLTGALPFQGANRKDTMTMILKAKLGMPQFLSANAQLLLRALFKRNPQNRLGY-KNGLAEIKTQAFFANIDFDLLYKKAIHPPFKPAVSRNDDTFYFDKEFTSRDPKDSPAVPPSAGANQLFRGFSYVDPSALTEVPE-EAMEXXXXXXXXXXXXXXXDYVPTASTTVKNINDDYDIKEEIGVGAFSVCKRCVHRSSGKEYAVKIIDKSKRDPSEEVEILLRYGQHPNICTLRDVYEDARSSYLVMERMVGGELLDKIYRQKYLSEKETAYIMDVLTKTIDYLHQQGVVHRDLQPSNILFATENCTPESIRILDFGFAKQMRAENGLLMTPCYTANFVAPEVLKKQGYDAACDIWSLGVLMYTMLSGRTPFATGPEDTP 2210
            E  IT  +K   +  KA+PS FELLKVLGQGSFGKVF+V+KI G D   +YAMKVLKKATLKVRDRVRTKMERDIL +V HPFIVKLHYAFQT GKLYL+L+FLRGGDLFTRLSKEVMFTE+DVK YLAELA+ALDHLH+LGI+YRDLKPENILLD +GHIKLTDFGLSKESI D EKK YSFCGTVEYMAPEVVNRRGH  ++DWWSFGVLM+EMLTG LPFQG +RK+TMTMILKAKLGMPQFLS  AQ LLR LFKRNP NRLG   +G+ EIK  +FF+ ID++ LY++ IHPPFKPA  R +DTFYFD EFT++ PKDSP +PPSA A+QLFRGFS+V   A+T   E +AM+ V               V           D Y++KE+IGVG++SVCKRC+H+++  E+AVKIIDKSKRDP+EE+EILLRYGQHPNI TL+DVY+D +  Y+V E M GGELLDKI RQK+ SE+E + ++  +TKT++YLH QGVVHRDL+PSNIL+  E+  PESIRI DFGFAKQ+RAENGLLMTPCYTANFVAPEVLK+QGYDAACDIWSLGVL+YTML+G TPFA GP+DTP
Sbjct:   49 EIAITHHVKEGHE--KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI-DHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKPATGRPEDTFYFDPEFTAKTPKDSPGIPPSANAHQLFRGFSFV---AITSDDESQAMQTVGVH----------SIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTP 626
The following BLAST results are available for this feature:
BLAST of TCONS_00071419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KS6A30.000e+070.71Ribosomal protein S6 kinase alpha-3 OS=Homo sapien... [more]
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