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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071340 ID=TCONS_00071340|Name=TCONS_00071340|organism=Clytia hemisphaerica|type=transcript|length=1867bp
CCGGAACCTTTTATCTTATGACAAGCGGACAGGTTATAAATCATATTAAA
TAAACCGCCAACTAATTGTACAAAATAGGGAACAAATTGTGCTATTAAgg
atttttttgtaattaaaatagttcatcttttcttttctggtttttaaaaa
agtttgctTACTCATGCCCTTGAATATTTACGCATGCGCTTTACAGTATC
AATTAAAATTACAATCTGTCAAAAGTAGAAAATCTAGTAAATTCATATAA
TACCGCCTAAGGAAAAAACGGCCACAACGCTAATTGTAAGGTATTAAGTC
AATGGAGTCAATCAGTGGTTAGGAACTGGAGATTCTTTTTGGTAATACTA
AAATATTATAAAACACTGCGGCCATTATTGGCTCTATTGGTCATTGGCTA
TTTACGTGCTGTGCTTATTGGCAGCAAAAATCTACTAAACGAGGAAATTC
AAGATAGATTGGTTTCTTAAAATTCTATGTTACAAAAAAGAGattaaaag
tagtaaaaaatgTTGACCTCGTAATATCTGAGCTCGTAATATCTGAGAGG
TCATGAAATAAAATGCTAAAAGTTGTCTAAAATCTTTACATAAAATGATG
TGAAAATACTTACTAGTGTCTTTAAAATGTGTTCGGTGAGCACCACATAT
GAATAAAATTCAGTACTAAAAGTGTTTTAAAATCCGGCAATTCTGTAATG
TTGtagaattatgacgtcatggtCGAACAAGATAACGTCAGCATTACGTA
AGAGTTCGGTTGGTGTCCATATGAAAGTACATACAAATATCTACTGTGTG
AAGCAGCTTTGATAGAAAAAATCCCTTaataaatgtttttgttttggtaa
TGGTGTGTGTAAGTGTAGGTATTTTACAATTGTGCAACATCGTTTAAGAG
TTTTTGACTTGGTCCGTACGGGTTCATTTTTTGATCCTCAGGTGCATATC
CGTTGTTGCCCTGGAAACGATCTAATCTCTCTTCCTTCAATTTGCGGATC
AACCGACCGTAGACCGGCAAGTTTTTCTTACGGACATACTCGAGATATTC
ACATTCCCGTAAGGTTAAGGATTGGTAGACGCGTCTAGCCTGTGAGCCTT
GAGATAAGAAACATGTGATGGTGACTAAATGGTCGACCACTTGCATGATG
AATCCAATACAACTAACAATCATACCGAAGATGAATAAAAACCACAAGAC
AATCAAAACGTATTGGTATAAGACATTCTGAGAGATTTCGCAAACGAATT
TGTGTGTATTGAACAAGTGGTGTTTGATATCTTTGCTCAGTTCCAAAACT
TCACAGAAACCGAATGTTGGAAGCATGATTTCTCCAGGTCTCAATCGTTT
GCGTCCAGCAGTATAATCATAAGCTTTGCTATTGCTTTGTTTGCTCCAGT
TAATCCATTCGGTACCGTATCTTCGGAAGTCACCATTCAACAGGTTGTCC
GTTGCAACAAAGGCAATCACGTTAACGACGAGATAACAAATCTTACAGAA
AATGTTCGCAAATAATCTCAATCGCATGCGCATTGGGGGGTTGATCTGGT
AGTTGAAGTAATTCTTGACAATTCCATCAATGTCTGGTTCGACAGCTTTG
ATGCTACTTTTCAAACTGATTAGATCTGTGTTGATGTATCGGAACAAGAC
ATAAGGGAGATAATAAAGGAAACCAATGACAGCGATGTAGAAGGGAAACC
ATTGATATTGGAGATAAAAGGTTTTCTCCAATGGCTCACATTGAGCATTT
GTTTCAGTTTCGCAAAGAGCACCATTCATCATACCATCTTCTTTAAGATT
TCTTGGGATACCATAATAAGCCATCTTTCCTTGGACCATAGGTAAGTCAC
GGTAAACGTAGAAGCCT Run BLAST on NCBI transcript from alignment at scaffold_60:294138..297206- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071340 ID=TCONS_00071340|Name=TCONS_00071340|organism=Clytia hemisphaerica|type=transcript|length=3069bp|location=Sequence derived from alignment at scaffold_60:294138..297206- (Clytia hemisphaerica)
CCGGAACCTTTTATCTTATGACAAGCGGACAGGTTATAAATCATATTAAA
TAAACCGCCAACTAATTGTACAAAATAGGGAACAAATTGTGCTATTAAGG
ATTTTTTTGTAATTAAAATAGTTCATCTTTTCTTTTCTGGTTTTTAAAAA
AGTTTGCTTACTCATGCCCTTGAATATTTACGCATGCGCTTTACAGTATC
AATTAAAATTACAATCTGTCAAAAGTAGAAAATCTAGTAAATTCATATAA
TACCGCCTAAGGAAAAAACGGCCACAACGCTAATTGTAAGGTATTAAGTC
AATGGAGTCAATCAGTGGTTAGGAACTGGAGATTCTTTTTGGTAATACTA
AAATATTATAAAACACTGCGGCCATTATTGGCTCTATTGGTCATTGGCTA
TTTACGTGCTGTGCTTATTGGCAGCAAAAATCTACTAAACGAGGAAATTC
AAGATAGATTGGTTTCTTAAAATTCTATGTTACAAAAAAGAGATTAAAAG
TAGTAAAAAATGTTGACCTCGTAATATCTGAGCTCGTAATATCTGAGAGG
TCATGAAATAAAATGCTAAAAGTTGTCTAAAATCTTTACATAAAATGATG
TGAAAATACTTACTAGTGTCTTTAAAATGTGTTCGGTGAGCACCACATAT
GAATAAAATTCAGTACTAAAAGTGTTTTAAAATCCGGCAATTCTGTAATG
TTGTAGAATTATGACGTCATGGTCGAACAAGATAACGTCAGCATTACGTA
AGAGTTCGGTTGGTGTCCATATGAAAGTACATACAAATATCTACTGTGTG
AAGCAGCTTTGATAGAAAAAATCCCTTAATAAATGTTTTTGTTTTGGTAA
TGGTGTGTGTAAGTGTAGGTATTTTACAATTGTGCAACATCGTTTAAGAG
TTTTTGACTTGGTCCGTACGGGTTCATTTTTTGATCCTCAGGTGCATATC
CGTTGTTGCCCTGGAAACGATCTAATCTCTCTTCCTTCAATTTGCGGATC
AACCGACCGTAGACCGGCAAGTTTTTCTTACGGACATACTCGAGATATTC
ACATTCCCGTAAGGTTAAGGATTGGTAGACGCGTCTAGCCTGTGAGCCTT
GAGATAAGAAACATGTGATGGTGACTAAATGGTCGACCACTTGCATGATG
AATCCAATACAACTAACAATCATACCGAAGATGAATAAAAACCACAAGAC
AATCAAAACGTATTGGTATAAGACATTCTGAGAGATTTCGCAAACGAATT
TGTGTGTATTGAACAAGTGGTGTTTGATATCTTTGCTCAGTTCCAAAACT
TCACAGAAACCGAATGTTGGAAGCATGATTTCTCCAGGTCTCAATCGTTT
GCGTCCAGCAGTATAATCATAAGCTTTGCTATTGCTTTGTTTGCTCCAGT
TAATCCATTCGGTACCGTATCTTCGGAAGTCACCATTCAACAGGTTGTCC
GTTGCAACAAAGGCAATCACGTTAACGACGAGATAACAAATCTTACAGAA
AATGTTCGCAAATAATCTCAATCGCATGCGCATTGGGGGGTTGATCTGGT
AGTTGAAGTAATTCTTGACAATTCCATCAATGTCTGGTTCGACAGCTTTG
ATGCTACTTTTCAAACTGATTAGATCTGTGTTGATGTATCGGAACAAGAC
ATAAGGGAGATAATAAAGGAAACCAATGACAGCGATGTAGAAGGGAAACC
ATTGATATTGGAGATAAAAGGTTTTCTCCAATGGCTCACATTGAGCATTT
GTTTCAGTTTCGCAAAGAGCACCATTCATCATACCATCTTCTTTAAGATT
TCTTGGGATACCATAATAAGCCATCTTTCCTTGGACCATAGGTAAGTCAC
GGTAAACGTAGAAGCCTAATGAAAAGCAAAGAATTGCAAGTTTAATATCA
TCAAAATACGGACAAGAATGAGTCTAATATGATATTGAGTAATCATCAGA
TGTGACTGTACTGAGGTCTGAGAATGCACAATAGTGTACGTTTACATTCC
TTGAAATTCCTTCTCTTGGGATTTTATGGAGGCTTTTAAAGCGTATAAAG
GTGGTATTCTCATTCAATATCAAATTTTTGAATTTATGATAAATCAAAGA
TATCTATGAAGATTTGATTTCTCAATGTAATGGTTTTTTTTTCTGGTAAA
GGTAAATTACAAAGAGGAAACCATAACAAACTGTGGTGGTTTAGGAGAAA
AGGCTGAGGAAGTGACTATTTAAACGCATACTTTCAAAATGTGCTTTTAA
TTAAACGAAATAGTTGACGCAGAAAAAAGGAAATGACTTTGGAAAGTATA
ATGATGATAACGTAAAAACAGGAGGAAACGACCAAATTTTCGAGTTCAAG
TTTCTACCGCATTAGCAGTTAAGAAAATTCTTTTGGCTATCGAGTACTTN
ACAATCAAAACGTATTGGTATAAGACATTCTGAGAGATTTCGCAAACGAA
TTTGTGTGTATTGAACAAGTGGTGTTTGATATCTTTGCTCAGTTCCAAAA
CTTCACAGAAACCGAATGTTGGAAGCATGATTTCTCCAGGTCTCAATCGT
TTGCGTCCAGCAGTATAATCATAAGCTTTGCTATTGCTTTGTTTGCTCCA
GTTAATCCATTCGGTACCGTATCTTCGGAAGTCACCATTCAACAGGTTGT
CCGTTGCAACAAAGGCAATCACGTTAACGACGAGATAACAAATCTTACAG
AAAATGTTCGCAAATAATCTCAATCGCATGCGCATTGGGGGGTTGATCTG
GTAGTTGAAGTAATTCTTGACAATTCCATCAATGTCTGGTTCGACAGCTT
TGATGCTACTTTTCAAACTGATTAGATCTGTGTTGATGTATCGGAACAAG
ACATAAGGGAGATAATAAAGGAAACCAATGACAGCGATGTAGAAGGGAAA
CCATTGATATTGGAGATAAAAGGTTTTCTCCAATGGCTCACATTGAGCAT
TTGTTTCAGTTTCGCAAAGAGCACCATTCATCATACCATCTTCTTTAAGA
TTTCTTGGGATACCATAATAAGCCATCTTTCCTTGGACCATAGGTAAGTC
ACGGTAAACGTAGAAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071340-exon-scaffold_60-1575043694:295366..297206 | TCONS_00071340-exon-scaffold_60-1575043694:295366..297206 | Clytia hemisphaerica | exon |
| TCONS_00071340-exon-scaffold_60-1575043694:294138..294163 | TCONS_00071340-exon-scaffold_60-1575043694:294138..294163 | Clytia hemisphaerica | exon |
| TCONS_00071340-exon-scaffold_60-1510915933:295366..297206 | TCONS_00071340-exon-scaffold_60-1510915933:295366..297206 | Clytia hemisphaerica | exon |
| TCONS_00071340-exon-scaffold_60-1510915933:294138..294163 | TCONS_00071340-exon-scaffold_60-1510915933:294138..294163 | Clytia hemisphaerica | exon |
| TCONS_00071340-exon-scaffold_60-1491911889:295366..297206 | TCONS_00071340-exon-scaffold_60-1491911889:295366..297206 | Clytia hemisphaerica | exon |
| TCONS_00071340-exon-scaffold_60-1491911889:294138..294163 | TCONS_00071340-exon-scaffold_60-1491911889:294138..294163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:294138..297206 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
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