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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070979 ID=TCONS_00070979|Name=TCONS_00070979|organism=Clytia hemisphaerica|type=transcript|length=3900bpRun BLAST on NCBI protein sequence of TCONS_00070979-protein >TCONS_00070979-protein ID=TCONS_00070979-protein|Name=TCONS_00070979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1107bp MSSKGIYEADGKKFLANHLKADTFVAPLFAHVAEDTDLEELAKTHPWLLERun BLAST on NCBI transcript from alignment at scaffold_58:676583..692171- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070979 ID=TCONS_00070979|Name=TCONS_00070979|organism=Clytia hemisphaerica|type=transcript|length=15589bp|location=Sequence derived from alignment at scaffold_58:676583..692171- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:676583..692171- >TCONS_00070979 ID=TCONS_00070979|Name=TCONS_00070979|organism=Clytia hemisphaerica|type=CDS|length=89748bp|location=Sequence derived from alignment at scaffold_58:676583..692171- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070979 vs. Swiss-Prot (Human)
Match: ACLY (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3) HSP 1 Score: 1471.06 bits (3807), Expect = 0.000e+0 Identity = 734/1109 (66.19%), Postives = 886/1109 (79.89%), Query Frame = 2
Query: 83 MSSKGIYEADGKKFLANHLKADTFVAPLF--AHVAEDTDLEELAKTHPWLLEKKLVVKPDQMIKRRGKLGLLKVNTDWEGVKEWLAEKRGKETQVGKVSGLLKKFIIEPFIEHDEKEEMYLCIYTQRDEDVILFHHEGGIDIGDVDSKALKMTIPIDGETNTDAIKSTLLSNVAQSDQDRVAGFIFSIFDLYKDLFFTYLEINPLVVKTDSIYVLDLAAKIDQTAEFLCSAKWGKIGFPPPFGREAYPEEAFIAELDAKSGASLKLTVLNKAGRVWTMVAGGGASVVYSDTIADLGGGDEMANYGEYSGAPSETQTFEYAKTILKLMTEGEPHPDGKVLIIGGGIANFTNVSATFAGIVKALQLYQQELIRHKVKIFVRRGGPNYQEGLRIMRELGATLGVPMHVFGTETHMTAIVGMALGKTEIPRTSVCDSNDAASKMFFNTYDESAPASGSGTPKRKASNELTSSQESDKKKLCKANSGDFVMVQHSETPP-------SVLFTKDTKAIVWGLQHRAVQGMLDFDYVCQRKEPSVKAMVYPFSGNHNQKFYYGHKEIMIPVFSKMAVAVEKIPDASVLVNFASLRSAYDATVDALQYPQFRTVAIIAEGIPERITQQLNKKAKDKGVIIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVGYISRSGGLSNELNNIIARNTDGVNEGLAIGGDRYPGTVFIDHFLRYEANPEIKMMVLLGEVGGNDEYEICRAIKDGRITKPVVGWCIGTCASVLTTEVQFGHANACANSFAETAVAKNQALRDAGAAVPDSFNDLDKTIKSVYEKLVMDGTIXXXXXXXXXXXXMDYSWAQELGLIRKPSSFISAICDERGQELLYAGTKISDVFKDDXXXXXXXXXXWFQRRLPKYASKFIEMCLMITADHGPAVSGAHNTIVTSRAGKDLISSLCSGLLTIGDRFGGALDGAAKIFSEAYDSGTAPMEFVNSMRXXXXXXXXXXXXXXXXNNPDARVVIMKNYMKEHFPQTDLLDYALEVEQITTSKKPNLILNVDGCIAVGFVDLLRNCGCFTRSEADEYVQNGALNGLFVLGRSVGFIGHHLDQKRLKQGLYRHPWDDISYIIPE 3382
MS+K I E GK+ L + + + F A V DTD L + HPWLL + LVVKPDQ+IKRRGKLGL+ VN +GVK WL + G+E VGK +G LK F+IEPF+ H + EE Y+CIY R+ D +LFHHEGG+D+GDVD+KA K+ + +D + N + IK LL + + ++ +A FI +F+ Y+DL+FTYLEINPLVV D +YVLDLAAK+D TA+++C KWG I FPPPFGREAYPEEA+IA+LDAKSGASLKLT+LN GR+WTMVAGGGASVVYSDTI DLGG +E+ANYGEYSGAPSE QT++YAKTIL LMT E HPDGK+LIIGG IANFTNV+ATF GIV+A++ YQ L H+V IFVRRGGPNYQEGLR+M E+G T G+P+HVFGTETHMTAIVGMALG IP ++ A N SG+ A + S ES ++ A M Q S P + LF++ TKAIVWG+Q RAVQGMLDFDYVC R EPSV AMVYPF+G+H QKFY+GHKEI+IPVF MA A+ K P+ VL+NFASLRSAYD+T++ + Y Q RT+AIIAEGIPE +T++L KKA KGV IIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSV Y+SRSGG+SNELNNII+R TDGV EG+AIGGDRYPG+ F+DH LRY+ P +KM+V+LGE+GG +EY+ICR IK+GR+TKP+V WCIGTCA++ ++EVQFGHA ACAN +ETAVAKNQAL++AG VP SF++L + I+SVYE LV +G IVP EV PPTVPMDYSWA+ELGLIRKP+SF+++ICDERGQEL+YAG I++VFK+++GIGGVLGLLWFQ+RLPKY+ +FIEMCLM+TADHGPAVSGAHNTI+ +RAGKDL+SSL SGLLTIGDRFGGALD AAK+FS+A+DSG PMEFVN M+K+GKLI+GIGH++KS+NNPD RV I+K+Y+++HFP T LLDYALEVE+ITTSKKPNLILNVDG I V FVD+LRNCG FTR EADEY+ GALNG+FVLGRS+GFIGH+LDQKRLKQGLYRHPWDDISY++PE
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTR-EKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTA--NFLLN---------ASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASFMTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADHGPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFVNKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPNLILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISYVLPE 1097 The following BLAST results are available for this feature:
BLAST of TCONS_00070979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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