TCONS_00070876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070876
Unique NameTCONS_00070876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070876 ID=TCONS_00070876|Name=TCONS_00070876|organism=Clytia hemisphaerica|type=transcript|length=1622bp
TCTCAGAGACACCATATGCAGCTGTTTTACTGAAATCTATGTTCAAAACG
CACTGTCAACACTGTTTCACCAAAATATCGCTCCCATTTCCCTGTTACAA
ATGCATCGAAGTTCGTTACTGTTCTGAAACTTGTCGCAAAGCATCTTGGG
AAGAGTATCACTATTTTGAGTGTGGTAGAATCAACTTATTGGACAAACTT
GGCATTTCTCGGTTAGCGATGAGGATCATCTTGGTAACACCTATGCAGAC
CCTACGACTGTTTGAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCAG
GTTGTAACAATGGAGGTTGCTATGACAGCAAAGAATACACAAGTGTCTAC
CATCTTGTTTCCAATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATA
TTCATGTGCTGCTCTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATA
TCGACGATTCGGTGGACTCGACCTTCATCGGAGGCTTAATGTTACGTCAT
ATATTACAATTGGTCTGTAATGCTCATGCGATTACGTCATTGAGTTACAC
AGACAGCCAATCAAATGTGGTAGAACAGGATCAGGTACGTATAGCGACGG
CCATCTACCCGACAACCAGCCTCCTCAACCATTCATGCGAACCTTCGATC
GTCAACTCGTTTCAAAATGAACGTTTAATTGTTAAACTGACTCGTGACGT
TAAGAAaggtgaagaaattttcaattgctaCGGCCCTCATTACCGTCGAA
TGGAATTCAAAGAACGACAAAAAGTCTTACAGGAGCAGTACTTTTTCACT
TGTTCGTGTACTCATTGTGAACAAGGTTTGACGTCGGTGAACGAGCTCGA
TTGCTTCATTTGTGAAAAATGTCAAGGAATTCTAAACAATCAAGGATGTT
GCCAGAGCTGTTGGATAGCTGATAAGGACCGACTTGTGTATTGTGAAAAT
ATAGAACAAACATGCCATGATAATTTCTTGAACGCTCTTTCTTTAATGAC
CAACAAACGAGACGATCAACTGAACATCAAGGCTGCTATCAAGATCTTAA
AACGTTGTCAGAAATCTCGTCTCGCTGTTTTAAGTCCCAATCATAAGAAG
TTGGGCGAGACAAATGACGCGCTAGGTAAATGTTACGCCACGTTGGATAA
TTACGAATCAAGTGTGGATTACGTCACTAAAAGTGTTGCCGTCACTGAGT
TGCATTTCGGTGGTGAGAGTATTGAAGTTACCAACGAGTTATTGAAGCTT
TCCGATGTTTACATGGCCTGGATACAACAGTTAatagaccagaaaaacaa
aaccaaGCTCAATAAACATCTGACGTCACAAGGGATACCTATGATTGAAC
GAACTTTACGATTGGTTCAAATGAacaaagaagaaggaaatgaaGATATT
GCATTGCTTTCCGATCGACTTCAATCTCTCATCAAACTTCAACACCTTTT
GTAATCCTTGATTTTGGGACATTGTGTTTTTCGGTATGGATTGAAGGAGT
TTTTGTaccattttgataattttttaatatttttgtagcattattttgta
tttttatagaacattttcacttctttttttaaaagatagatAAAGGGTTA
TTTTCATTTGCTTgaacttttt
Run BLAST on NCBI

transcript from alignment at scaffold_58:1197145..1198766+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070876 ID=TCONS_00070876|Name=TCONS_00070876|organism=Clytia hemisphaerica|type=transcript|length=1622bp|location=Sequence derived from alignment at scaffold_58:1197145..1198766+ (Clytia hemisphaerica)
TCTCAGAGACACCATATGCAGCTGTTTTACTGAAATCTATGTTCAAAACG
CACTGTCAACACTGTTTCACCAAAATATCGCTCCCATTTCCCTGTTACAA
ATGCATCGAAGTTCGTTACTGTTCTGAAACTTGTCGCAAAGCATCTTGGG
AAGAGTATCACTATTTTGAGTGTGGTAGAATCAACTTATTGGACAAACTT
GGCATTTCTCGGTTAGCGATGAGGATCATCTTGGTAACACCTATGCAGAC
CCTACGACTGTTTGAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCAG
GTTGTAACAATGGAGGTTGCTATGACAGCAAAGAATACACAAGTGTCTAC
CATCTTGTTTCCAATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATA
TTCATGTGCTGCTCTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATA
TCGACGATTCGGTGGACTCGACCTTCATCGGAGGCTTAATGTTACGTCAT
ATATTACAATTGGTCTGTAATGCTCATGCGATTACGTCATTGAGTTACAC
AGACAGCCAATCAAATGTGGTAGAACAGGATCAGGTACGTATAGCGACGG
CCATCTACCCGACAACCAGCCTCCTCAACCATTCATGCGAACCTTCGATC
GTCAACTCGTTTCAAAATGAACGTTTAATTGTTAAACTGACTCGTGACGT
TAAGAAaggtgaagaaattttcaattgctaCGGCCCTCATTACCGTCGAA
TGGAATTCAAAGAACGACAAAAAGTCTTACAGGAGCAGTACTTTTTCACT
TGTTCGTGTACTCATTGTGAACAAGGTTTGACGTCGGTGAACGAGCTCGA
TTGCTTCATTTGTGAAAAATGTCAAGGAATTCTAAACAATCAAGGATGTT
GCCAGAGCTGTTGGATAGCTGATAAGGACCGACTTGTGTATTGTGAAAAT
ATAGAACAAACATGCCATGATAATTTCTTGAACGCTCTTTCTTTAATGAC
CAACAAACGAGACGATCAACTGAACATCAAGGCTGCTATCAAGATCTTAA
AACGTTGTCAGAAATCTCGTCTCGCTGTTTTAAGTCCCAATCATAAGAAG
TTGGGCGAGACAAATGACGCGCTAGGTAAATGTTACGCCACGTTGGATAA
TTACGAATCAAGTGTGGATTACGTCACTAAAAGTGTTGCCGTCACTGAGT
TGCATTTCGGTGGTGAGAGTATTGAAGTTACCAACGAGTTATTGAAGCTT
TCCGATGTTTACATGGCCTGGATACAACAGTTAatagaccagaaaaacaa
aaccaaGCTCAATAAACATCTGACGTCACAAGGGATACCTATGATTGAAC
GAACTTTACGATTGGTTCAAATGAacaaagaagaaggaaatgaaGATATT
GCATTGCTTTCCGATCGACTTCAATCTCTCATCAAACTTCAACACCTTTT
GTAATCCTTGATTTTGGGACATTGTGTTTTTCGGTATGGATTGAAGGAGT
TTTTGTaccattttgataattttttaatatttttgtagcattattttgta
tttttatagaacattttcacttctttttttaaaagatagatAAAGGGTTA
TTTTCATTTGCTTgaacttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044077XLOC_044077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070876-exon-scaffold_58-1491911889:1197145..1198766TCONS_00070876-exon-scaffold_58-1491911889:1197145..1198766Clytia hemisphaericaexon
TCONS_00070876-exon-scaffold_58-1510915933:1197145..1198766TCONS_00070876-exon-scaffold_58-1510915933:1197145..1198766Clytia hemisphaericaexon
TCONS_00070876-exon-scaffold_58-1575043694:1197145..1198766TCONS_00070876-exon-scaffold_58-1575043694:1197145..1198766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1197145..1198766 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.53946	1.93694	1.30136	1.45168	1.49485	0.406624	1.50752	1.27846	0.972133	1.26176	0.130786	0.612551	0.535495	0.871078	0	0.536067	0.666714	1.14456	0.152945	0	0.544655	0.166632	2.60018	2.23998	0.451269	1.02333	0	0	1.51555	1.19244
Blast
[Close]
BLAST of TCONS_00070876 vs. Swiss-Prot (Human)
Match: SMYD4 (SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.891e-49
Identity = 131/473 (27.70%), Postives = 224/473 (47.36%), Query Frame = 3 
Query:   51 HCQHCFTKISLPFPCYKCIEVRYCSETCRKASWEEYHYFECGRINLLDKLGI-SRLAMRIILVTPMQTLR------------------------------LFEQQDSSKL--TVSSGCNNGGCYDSKEYTSVYHLVSNSQYMIAEDLF-----------QYSCAALLMLKV--LSRFSYIDDSV------DSTFIGGLMLRHILQLVCNAHAITSLSYTDSQSNVV-EQDQVRIATAIYPTTSLLNHSCEPSIVNSFQNERLIVKLTRDVKKGEEIFNCYGPHYRRMEFKERQKVLQEQYFFTCSCTHCE---QGLTSVNELDCFICEKCQGILNNQGCCQSCWIADKDRLVYCENIEQTCHDNFLNALSLMTNKRDDQLNIKAAIKILKR------------CQKSRLAVLSPNHKKLGETNDALGKCYATLDNYESSVDYVTKSVAVTELHFGGESIEVTNELLKLSDVYM 1265
            +C  C        PC  C   +YCS+ C + +WE YH  EC    LL  LG+   +A+R+ L+   + +R                              L E + +  +  T   GC+  G Y++  Y +V++L+ +++    E  F           Q   A+L  +    +   S +  +V      D T  G  MLRH+LQL CNA A+T++ +T  + ++V +  QVR+AT I+P  SLLNHSC P+   SF +    ++ ++ ++KG+EI +CYGPH  RM   ERQ+ L+ QYFF C+C  C+     + +    + F C  C   +  QG          D ++ C +  ++C ++ ++   L++  +D Q  ++ A K+L+             CQ+   + L   H  +GE  D L +  A L +++ S  ++ +S+ V E+  G  S+E+ +EL KL+ ++ 
Sbjct:  295 YCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYENN-YNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQTEAHRMAAGPRWEAFCCNSCGAPM--QG----------DDVLRCGS--RSCAESAVSRDHLVSRLQDLQQQVRVAQKLLRDGELERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSATHLQRSLYVVEVRHGPSSVEMGHELFKLAQIFF 752
The following BLAST results are available for this feature:
BLAST of TCONS_00070876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMYD41.891e-4927.70SET and MYND domain-containing protein 4 OS=Homo s... [more]
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