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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070368 ID=TCONS_00070368|Name=TCONS_00070368|organism=Clytia hemisphaerica|type=transcript|length=1716bpRun BLAST on NCBI protein sequence of TCONS_00070368-protein >TCONS_00070368-protein ID=TCONS_00070368-protein|Name=TCONS_00070368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp MVLRSLVTSLLNKYLGKYVKDIDSENLTIGLWSGKVSLSELELREEALVERun BLAST on NCBI transcript from alignment at scaffold_55:271636..287430+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070368 ID=TCONS_00070368|Name=TCONS_00070368|organism=Clytia hemisphaerica|type=transcript|length=15795bp|location=Sequence derived from alignment at scaffold_55:271636..287430+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_55:271636..287430+ >TCONS_00070368 ID=TCONS_00070368|Name=TCONS_00070368|organism=Clytia hemisphaerica|type=CDS|length=25218bp|location=Sequence derived from alignment at scaffold_55:271636..287430+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070368 vs. Swiss-Prot (Human)
Match: VP13A (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 1.244e-55 Identity = 142/418 (33.97%), Postives = 236/418 (56.46%), Query Frame = 2
Query: 62 MVLRSLVTSLLNKYLGKYVKDIDSENLTIGLWSGKVSXXXXXXXXXXXXXXXXPIDVNGGYIGQLSVSIPWTSIYVNPVEIEIDEVFILTGPSVEKPYNEEKEKRKSNAAKQNQIKALXXXXXXXXXXXXXXNGTAADDTLAEKLQAQILKNLQVRIKNIHVRYEDKTTIPGQPFSVGAMLYSVTSETTTANWIPTIIDGSVRKFYKMVNLDSLSLYWNSNTQ-FSMTSNENWKALMKSQVTNQS-SKTHIDYILEPLSLAVHMEVDQDARVSMEYPKFLMQVILKELTLSLSKEQFNGIMKLLDSFMLMEVNQIYRKYKPLKTVKEDPKAWWQYILKSYTETSYK----QWTWEYMKSHREXXXXXXXXXXXXXXXGFQKNPDPNHLAVIKKLIKEQEENLDVINILIARNQATNEI 1297
MV S+V +LN++LG YV D+D+ L++G+W G V+L L+++E AL +LD+P V G+IG L + IPW ++Y PVE ++E+++L PS Y+ KE+++ AKQ ++K +E++K E DT AEKL QI+KNLQV+I +IH+RYED T +P S G L +++ +TT W+P + D + + K++ LD+L YWN +Q F ++ +N +K+ + N++ D++ P+S + +++ + PK +++ L + + +K Q+ IM+LL+S +M N YRK+KP + + WW Y + E + W+W++++ HR+ K+Y +LY +KL K P L +++L K LDV NI IAR A E+
Sbjct: 1 MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVGHIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEEAKQKVVDQEQHL--PEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDKPLSFGISLQNLSMQTTDQYWVPCLHDETEKLVRKLIRLDNLFAYWNVKSQMFYLSDYDNSLDDLKNGIVNENIVPEGYDFVFRPISANAKLVMNRRSDFDFSAPKINLEIELHNIAIEFNKPQYFSIMELLESVDMMAQNLPYRKFKPDVPLHHHAREWWAYAIHGVLEVNVCPRLWMWSWKHIRKHRQKVKQYKELYKKKLT---SKKPPGELLVSLEELEK----TLDVFNITIARQTAEVEV 409 The following BLAST results are available for this feature:
BLAST of TCONS_00070368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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