TCONS_00070366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070366
Unique NameTCONS_00070366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070366 ID=TCONS_00070366|Name=TCONS_00070366|organism=Clytia hemisphaerica|type=transcript|length=633bp
tgccatccaGGATGGCAATCTTCATTGAAATAAACGTGCtataaaaatct
acaatttaatGTCTTCAAAAATTCTGCTGTCAATTCAAAATAAGAATTAT
TCGAAAGtcttaaagaaaaattttcgtCTGTGACCAGCTGTGACGGCATT
TTGCAATGATTTCAGTTTGCTTGTTTAACAAGTTCCGACCCAGATAGGTA
GCAATCTCAAATTTCTCCTGTAAACATAATAAGCAAACTAGTATAAAGTA
ATTATATAAAGCTCTGTTATCATTAACATTGGGCACTGTTATTGGTTTTG
GTTAACACAAAGCATAGATATATCCAAAAACTCTTAACAATCAAATTGGT
CTGATAGGTTGAAACTCAAAATTATGGTATAATTGACCtaaatgaaccaa
tcaaataAGTGCTTGGATTATAAGCGTCTGATTAAAGCAAGGCAAGTACG
ATGTAGCTATATgtcgggttggtctaaaaagcaggtaGCCAATAGTCGTT
TGGGAGAACGccacagtcttttgaataactaattactccaatAATGATAA
CACCATGTAATTGATTTGTCCTTTACAACACAGCTATTACTAAggtacaa
gataatttatcctaCCTAATTGTATggctggag
Run BLAST on NCBI

transcript from alignment at scaffold_55:268230..268925+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070366 ID=TCONS_00070366|Name=TCONS_00070366|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at scaffold_55:268230..268925+ (Clytia hemisphaerica)
tgccatccaGGATGGCAATCTTCATTGAAATAAACGTGCtataaaaatct
acaatttaatGTCTTCAAAAATTCTGCTGTCAATTCAAAATAAGAATTAT
TCGAAAGtcttaaagaaaaattttcgtCTGTGACCAGCTGTGACGGCATT
TTGCAATGATTTCAGTTTGCTTGTTTAACAAGTTCCGACCCAGATAGGTA
GCAATCTCAAATTTCTCCTGTAAACATAATAAGCAAACTAGTATAAAGTA
ATTATATAAAGCTCTGTTATCATTAACATTGGGCACTGTTATTGGTTTTG
GTTAACACAAAGCATAGATATATCCAAAAACTCTTAACAATCAAATTGGT
CTGATAGGTTGAAACTCAAAATTATTGTATAATTGACCTANTCCCCTTAA
CAATCAAATCGGTCTGATAGGTTGAAACTCAAAATTATGGTATAATTGAC
CtaaatgaaccaatcaaataAGTGCTTGGATTATAAGCGTCTGATTAAAG
CAAGGCAAGTACGATGTAGCTATATgtcgggttggtctaaaaagcaggta
GCCAATAGTCGTTTGGGAGAACGccacagtcttttgaataactaattact
ccaatAATGATAACACCATGTAATTGATTTGTCCTTTACAACACAGCTAT
TACTAAggtacaagataatttatcctaCCTAATTGTATggctggag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043831XLOC_043831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070366-exon-scaffold_55-1491911889:268230..268586TCONS_00070366-exon-scaffold_55-1491911889:268230..268586Clytia hemisphaericaexon
TCONS_00070366-exon-scaffold_55-1510915933:268230..268586TCONS_00070366-exon-scaffold_55-1510915933:268230..268586Clytia hemisphaericaexon
TCONS_00070366-exon-scaffold_55-1575043694:268230..268586TCONS_00070366-exon-scaffold_55-1575043694:268230..268586Clytia hemisphaericaexon
TCONS_00070366-exon-scaffold_55-1491911889:268650..268925TCONS_00070366-exon-scaffold_55-1491911889:268650..268925Clytia hemisphaericaexon
TCONS_00070366-exon-scaffold_55-1510915933:268650..268925TCONS_00070366-exon-scaffold_55-1510915933:268650..268925Clytia hemisphaericaexon
TCONS_00070366-exon-scaffold_55-1575043694:268650..268925TCONS_00070366-exon-scaffold_55-1575043694:268650..268925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:268230..268925 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334696	0.571167	0.0947399	0	1.46691	0.713335	0.753032	0.906402	0.352552	0.174677	0.423864	0.278632	0.50084	0.28896	0.522641	0.0509885	0	0.128764	0.622631	0	0.323603	0.118382	0.0959389	0.0872224	0.089837	0.561242	0.229467	0.244893	0	0.283864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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