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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070030 ID=TCONS_00070030|Name=TCONS_00070030|organism=Clytia hemisphaerica|type=transcript|length=948bp
GCATTTTGCAACTGCAAGCAAATCTGCAAAATGATAGATAGCAAGAAATC
AACATTGAAATCTGCATATCTATAGACGTCAGCTCAATTTTCCATACGTG
TGTAAAGAAATAACATCTTCCACCATGGAAGAAATGGACACAAGAGGGAC
AATGAACCTCAGGGATCTAGAGGCTAACATCAAAACACTTATACCTGATA
TTGCATTGGCTGCTGAAAAACCCAACCATCCAAATCCTTTTAGTAGTAAA
TTTGAATTCACCACATTGGATAAAGTGCAGCTCTACACTATTGGATTGAT
ATTGATTCCACTTCGTTTGATCATCACATTTATATCCTTTCTGTTTGCAA
GTCTATTCGCAAAGATTTGTTTGATTGGCTACACACCatcagattcacca
gaaccatttaCTGGTTTCAGAAGGGTTGGTCAGTACTTACTATGGGGTGT
TGCAAGATTCCTTCTCTTCGTGTACGGTTTTTGGTACATTCCAACCAAGG
GGAGATTGTCAGATATCAAACATGCACCAGTGGTTGTGGTGGCTCCCCAC
ACTTCTTTGATGGATGGATTGTTATTGTCGACGTTGAGAACTCTTTTCTC
AGCTGTTGGTCGGCACGAAAATAACCAAATTTTCTTGATTGGATCCATTT
TGCAAATGATCCAACCCTTGACTGTCAATCGAACGCAAAAGAATTCGAAA
CAAAGAGTTGTCAAAGAGATTGATCGCCGAGTCAAGGGAAACTGGCCACG
ACTTGTTATCTTTCCTGAAGGTAATAactcaaattttttatcaactcaat
ttttcaccttttaataaattttacCATCAACATCCAAAGTCTGTAGTAAA
TGGCTTGTATTtcattaagaaaatttaataaTATAATGAacagaaaaatt
ttatcaaagatTATACCCATGCAATCCCTTCTGAAAAACCTATTTAGG Run BLAST on NCBI transcript from alignment at scaffold_512:328007..335133+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070030 ID=TCONS_00070030|Name=TCONS_00070030|organism=Clytia hemisphaerica|type=transcript|length=7127bp|location=Sequence derived from alignment at scaffold_512:328007..335133+ (Clytia hemisphaerica)
GCATTTTGCAACTGCAAGCAAATCTGCAAAATGATAGATAGCAAGAAATC
AACATTGAAATCTGCATATCTATAGACGTCAGCTCAATTTTCCATACGTG
GTATGATATTTGTATGATCCATATCTTTCTAATTTATCATTTATATATTG
CCTGTCATCGGCTTGGTGGCTTGgtctgttttttgtttttgtcaagCAGG
TCAAGAAGATGCACTGCACGTTGCTTGATTTAGAATGGAACACCCTTTAG
AACCGTCCATTTAAACTTGAAGTTAAAAGCTTTCTTCTACTGAAAGTTAT
TCAGGTTCTTATTTCTGCAATgtcatcaaaatcatgaaaattggcTAAGG
Cgacaatcacaaataacttcgtttcgcgtcgcccgaccgactctcgaaaa
ttgagtagNTTATTCAGGTTCTTATTTCTGCAATgtcatcaaaatcatga
aaattggcTAAGGCgacaatcacaaataacttcgtttcgcgtcgcccgac
cgactctcgaaaattgagtagaattgagtcggtgagtcggtaaatttgtc
ggacttttctGTCGATGACGTTTctttcgttcaaaaattttattattgcc
gattttttgcgagcgatttctagcgcattcgcggcattttgactttgttc
aTCAACattacagtgttcaaaggtcataatttgaaaccacccgTAACGCG
CGGtcgttttggctgctggctgacagtttccttcaagaatacactccaaa
aatggatgattaAGGTCGGACGAGAAGAAGAAATTCACTGGGTCCAATTT
TAAGAAAACCCGAAAAATTTTACGACCGACCGACTCACTTTTTCGACCCA
ACGAGGACGTGAAATGAAGATATTTGTGATTGTCGCCTAACATATTCTGA
AATATTAGGTTTTTTTGAAATTTCGAATTTTTAGCAAGTGGGACCATCTG
ACCATATGCCATCTTCGCATCTCATTTTCATTATCGAAAAAGCTTTGAAA
AAAAGATATTTAGGTCAATTGTGGAACCTCGTGCAACCATTGGGGAGTGC
CTTAGCTAGGTACCGTGAGTTTGAAATTCATGAGGTTGCAAAATTGTAAA
ATTGGCCTGCCTTAAAAAGCATTTTGCTACCCAAAATTTGCTTAAAATGT
CTCGTTTAAGGCTCAAACGGGTTCAATTTGTGACCAATAGAGATTATTTT
GTTGTTTCTTCATAGACTTTACTACAACGATGGAAAAAAAAGATTTGCAA
TGATTTACAAGCTGGAAGAGATGCCATTTTTCAATTTTTTGCCTGTACAG
AAGTGCAATACGTATCTTGGTCTCATTAATGTCAACATCCTTCTTCTAAt
ctcgacacccttctttagagatagagCAATAGTAGAAAGGTTGGAATtag
tccggcggcgatccaggatcacccttacaattagtaaatatgggttttta
tttaattttcctatcatatggtcccttgggaccccagaaccagtttttgc
caagctggcaaagctggggaaaattttttatgggggcttgaagggggtag
ggtcattttagcctgggggtccttagaaagtcgatttttgaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGACTTAGTCCCCCGGAATTggctgatacgtcttcaaaaa
tgcaatattttgtgctgacgtcagcatttttgagaaaattttcagcgaaa
gataccagtttcaacagatgcgtctcgaagagtactataGATTAGaaggg
gtcatttatagggtttcctaggctagatcatgagatatttgagtttgaaa
ttttgctgactcagcgtttttcaacgttttttgcccttttctgttgagtc
agcaaaatttcaaactcaaatatctcatgatctagcctaggaaaccctat
aaatgacccctctaatcgatagtactcttcgagacgtATCTGTTAAAAAT
GGTATCTTTCGCtggaaattctctcaaaaatgctgacgtcagcattaaat
attgcatttttgaagacgtatcagccaattccgggagactaagtccgcca
aatgtgacaaatgaccccattttggagatctactcttcaagctctatctg
atggcacaatcagttttagctaaatgagaacttcaaaaatcgactttcta
aggacccccttgctaaaatgaccctacccccttcaagcccccataaaaaa
atttccccagctttgccagcttggcaaaaaccggttttggggtcccaagg
gaccatataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCATCCTTCTTCTAAtctcgacacccttctttagagatagagG
AATAGTAGAAAGGTTGGAATCGCTTATGGAAACTATTCTTTGCTTAGCAA
CCAGAAAGGAacaaatcttttgtctatcagcGATTCTGGACCTCACTAAA
TATGGgggtgttggaattagaagAGAGATGTTAACATTAGACTAACCTAC
GGTATCCTCAAGGGGGTTTGGCCAAATTTCGattagatttttcagagatt
ttAAAGTTGCCATTatggaaaataggaaaattttctggACTTTTACTTTT
TCTAGAGAGTTCTAGGTGTAGCTTTATTCCTGTAAATTTCAGACCTGTAG
ctttattacaaaaataaattattgcatcttataaaaacataCTTTTAACC
AACTTATGAAATAGCCTATTTCAGTAGCGCAGACAGGAGGGGTGCAAAAT
TTTACATtgattacagtgtcataaaaacctgctctcctacacaaattatG
CACCCCTCCTGTTTATGCTACTGTATTTTTTAAGGCTAATCTGGgctaat
ttctttttcaaaacccaTAAGTTTTGGTTGGTTGTTGACTTGCTAGGTTT
GGATGCTCGTGATCTCAGAGATATATTGCTCATTTTTAAAGAGCTCTTTT
gtccataggtgaaatcttattggcttatTTTTTAGGagttagaaattaga
tgagacgagattcattgatTTTGACATCAGAGATAtaattggactaaaaa
agggcctgtaaacttggccatccatcatcaaatgacaagattttttgatc
aatgttttcttcaaAGTGAATGCTATCAATTCATTTGGCtctatacccaa
tttttattacttttattacttgaaactgagtaatttcaggctcagcattg
ttctgaaattgttcttattttcttgcAAAGTTCTTAAATTGTTATGCTAT
TGCTTTTAATACTTTCCTCCGAAATTCTCCAGCaactttttgtctaaaaa
ttgagtctgaaattgtgtgtacTTATGAAAAACTTTCCATTTTCTGGCTT
AAGGTTAAGAAAACTTAAcaaaatggaacataaacttgtttctTGGGGCT
AAGTTTTGATCATATTCTCATTTATTAAAGGCTAGAAAACTTCAATACTG
ATAGTTAGAAtattcagagcaaacttgaattctactaaaaagtctttatt
catttctttactcaaatttcttttgatacattttacaaaagaattcaaaa
aactTTAGCTACCAATTACCGAGAAATTCAattcctgtttttctttatgc
CTCCATGTTTGAtttcagttttaatttttgttaaatCTTTCTCACCATAG
TGTAAAGAAATAACATCTTCCACCATGGAAGAAATGGACACAAGAGGGAC
AATGAACCTCAGGGATCTAGAGGCTAACATCAAAACACTTATACCTGATA
TTGCATTGGCTGCTGAAAAACCCAACCATCCAAATCCTTTTAGTAGTAAA
TTTGAATTCACCACATTGGATAAAGTGCAGGTAttaaattttaccatttt
tatcttttcatttcaatagagtgagtacacttttttttttttataagaat
gattaAAATTTTACTGAGGCTtcgctgttcttattttttggcactttgag
cctcaaattgttcttatcatgttcttatttatagggtgtaattgaggtat
tttaggcttttacccagtttttactactttgacctctaaattgcttgaaa
ttgagtaatttcaggctaaGCATTGCTCTGAAatcgttcttatttttttg
cactgttcttgaattgttcttgtttttttgtgattttgagcCTTGTCGTT
CTTATATATAAAATagctcttataaaagaaaaaagtgtacCATGAGACAA
AATATCATTAATAAAGAAAATCTCAATAAGCATAATTGTCTGAGAATCGA
AGAATTTATGATGATTATAGTTTAAGaatacactcattttgttttataag
catactgaagctcaaatttccagaaaaattaagcatatgctaagcatacc
ttgaggctcagccaaagaaaaatatattgaaCAGACATACGTATAATGCA
TATCAAAACTGGTAGTACTGTATTATACAGAATCCAAATTAATCCCTATA
TACTATATAATATCTAAAAGCACCAAGTCAAGAGAGAAAGTGTAGCAGTC
TGTCTTTGAAACATGAACACAACACTATAAAGATTCGAAATCATatggta
aacattcgaaaacaatagaatatctTCATTTCTCTCAAGATTAAAGATTG
TGGAAAATGCGCGAAAATCCCCTCTTCATAATTTctttaccaagcatagg
gttaagcatagtcgaggctcaaaattgagctttacttaagtatagtgagc
ttcagccgaaatttaccgtatgcttataaaacaaaatgagtgtagtCCAA
GTAAGGTTCTCCAAGACTCAAAATTCACAAATGTGTCATCTTGTAAACCA
AGTCGCCATGATATGTCCAAGAGAGTTGCACTGATGATGTGTATCATTta
cttcattttcaatgaataTGTCTTGCGTCATCCATCATAGAAAGGTTCTT
TAAAacctaaaattcacaaaatagtCTTGTAAACCAAGCCATCATAAAAT
GACTAGCATTGATTTGATGTGTATCATTTAATTCATTCTCGATGAGAATG
TCTTGAGTTATCTGATAATTACTTTATTATTATTTGTTTTAGCTCTACAC
TATTGGATTGATATTGATTCCACTTCGTTTGATCATCACATTTATATCCT
TTCTGTTTGCAAGTCTATTCGCAAAGATTTGTTTGATTGGCTACACACCa
tcagattcaccagaaccatttaCTGGTTTCAGAAGGTAtgtaagaaattt
tattttacttgGAAACTATGGTTTTGTCCATATGAATCATCTTCTGGNGG
TAtgtaagaaattttattttacttgGAAACTATGGTTTTGTCCATGAATC
ATCTTCTGGATAATGGCTTTTGTATTCCTTGTTAGAACATAGTTTTGTGC
ATGATAAAAGTACTTGTCGAGTATCCTGATGAAAAATAAAcactgagctt
tatataaaccctggagagtttctcaatcccggccaagcaataTACTTTGA
GTTTTGTTGAATGTGGTAATGGTAATCTGCACTTTtccattaaaggtttt
gtttttacataaatgttcccgtttcatatcagacacatatttcaaatCAG
GACAatgtctacctattgttatattatgctgatataagcaaaaaatgttt
atttttccctctttctgaccaatcttgctccacatccgtgtcaatccaat
gtgaaaaagcttgtaatttAAAAGTAAGCAAActatatcactcttattta
aaaacaaaacctttaacatgtGAATATTATTCTACACTTTTCATGAACTG
TTTTAACCTGGACTTTTTTTAGGGTTGGTCAGTACTTACTATGGGGTGTT
GCAAGATTCCTTCTCTTCGTGTACGGTTTTTGGTACATTCCAACCAAGGG
GAGATTGTCAGATATCAAACATGCACCAGTGGTTGTGGTGGCTCCCCACA
CTTCTTTGATGGATGGATTGTTATTGTCGACGTTGAGAACTCTTTTCTCA
GCTGTTGGTCGGCACGAAAATAACCAAATTTTCTTGATTGGATGTAAGTT
TATAAGTTTCTGTCagattattttattaataagtggattaaatttcgcgt
ggattaatctTCACAATTTTAGTCCTCGGAGCGAAATATTCAAAATCCGA
ATTTTGGtcaaaacccctaggaaaatgaaagaaatttggtgaaaaagaGG
CCGATTGGCGAAATTGTGTCCACGCCAAATTTTTTAGATTCTCGATCCGC
GAAAAAAAGTCAACGCAAAAATTATTCCACATAATGTAAATAcaattttt
gcctaaaaaagtcACTTTAAGATACACTGAAACATTGATAATCGTGTTCA
TGTAACATATAACAGTTATATTATTTTCGtagtttgaaattttacttgtt
ttgaaatttttagcaaaataaatttgaataaatttttcaactttttggaT
GGAGTTCTTCTAAATTAGTCAAGCAACACGCCGACTTACTTAtagatttt
gaagaaatttgattttataatGATCTGTGATGATTAAAAATGTGTTATAG
atacattttcattattttctcaGCCATTTTGCAAATGATCCAACCCTTGA
CTGTCAATCGAACGCAAAAGAATTCGAAACAAAGAGTTGTCAAAGAGATT
GATCGCCGAGTCAAGGGAAACTGGCCACGACTTGTTATCTTTCCTGAAGG
TAATAactcaaattttttatcaactcaatttttcaccttttaataaattt
tacCATCAACATCCAAAGTCTGTAGTAAATGGCTTGTATTtcattaagaa
aatttaataaTATAATGAacagaaaaattttatcaaagatTATACCCATG
CAATCCCTTCTGAAAAACCTATTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070030-exon-scaffold_512-1491911889:328007..328106 | TCONS_00070030-exon-scaffold_512-1491911889:328007..328106 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1510915933:328007..328106 | TCONS_00070030-exon-scaffold_512-1510915933:328007..328106 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1575043694:328007..328106 | TCONS_00070030-exon-scaffold_512-1575043694:328007..328106 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1491911889:331957..332136 | TCONS_00070030-exon-scaffold_512-1491911889:331957..332136 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1510915933:331957..332136 | TCONS_00070030-exon-scaffold_512-1510915933:331957..332136 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1575043694:331957..332136 | TCONS_00070030-exon-scaffold_512-1575043694:331957..332136 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1491911889:333349..333491 | TCONS_00070030-exon-scaffold_512-1491911889:333349..333491 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1510915933:333349..333491 | TCONS_00070030-exon-scaffold_512-1510915933:333349..333491 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1575043694:333349..333491 | TCONS_00070030-exon-scaffold_512-1575043694:333349..333491 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1491911889:334079..334299 | TCONS_00070030-exon-scaffold_512-1491911889:334079..334299 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1510915933:334079..334299 | TCONS_00070030-exon-scaffold_512-1510915933:334079..334299 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1575043694:334079..334299 | TCONS_00070030-exon-scaffold_512-1575043694:334079..334299 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1491911889:334830..335133 | TCONS_00070030-exon-scaffold_512-1491911889:334830..335133 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1510915933:334830..335133 | TCONS_00070030-exon-scaffold_512-1510915933:334830..335133 | Clytia hemisphaerica | exon |
| TCONS_00070030-exon-scaffold_512-1575043694:334830..335133 | TCONS_00070030-exon-scaffold_512-1575043694:334830..335133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:328007..335133 + |
Blast
BLAST of TCONS_00070030 vs. Swiss-Prot (Human)
Match: PCAT1 (Lysophosphatidylcholine acyltransferase 1 OS=Homo sapiens GN=LPCAT1 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 2.149e-22 Identity = 63/199 (31.66%), Postives = 110/199 (55.28%), Query Frame = 2
Query: 221 PNHPNPFSSKFEFTTLDKVQLYTXXXXXXXXXXXXXXXSFLFASLFAKICLIGYTPSDSPEPFTGFRRVGQYLLWGVARFLLFVYGFWYIPTKGRLSDIKHAPVVVVAPHTSLMDGLLLSTLRTLFSAVGRHENNQIFLIGSILQMIQPLTVNRTQKNSKQRVVKEIDRRVK--GNWPRLVIFPEGNNSNFLSTQFFTF 811
P NPF + + L K Q+ + L L P+RL++ L A A + +G + +P +R+V +LL + R + F GF + KGR + A ++ +APH+S D + ++ T+ S V + E+ I + G+++Q I+P+ V+R+ ++S+++ V+EI RR + G WP+++IFPEG +N T TF
Sbjct: 26 PPGRNPFVHELRLSALQKAQVALMTLTLFPVRLLVAAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVVDFLLKAIMRTMWFAGGFHRVAVKGRQALPTEAAILTLAPHSSYFDAIPVTM--TMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTN--RTCLITF 220
The following BLAST results are available for this feature:
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