TCONS_00069794 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069794
Unique Name	TCONS_00069794
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2272

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_508:138229..143758-

transcript sequence

>TCONS_00069794 ID=TCONS_00069794|Name=TCONS_00069794|organism=Clytia hemisphaerica|type=transcript|length=2272bp
aaaacatatgGAAAGTATAAAACTTCTAAGAACCTCAAATCTGATGATTG
GGATGAAATTGTTGGTGTGAAAGCTGATATCAGGGACCAAGGAGATGAAA
TTGATGAAGTGTTTCGCAAAGTAAAGCCAATTCAGATACATAAGATGGCT
GGTTTGTTTGAGGGTTTATCAGTCAGCGATCATTCAACTCCCATTGTTTT
ATGCGAAGATACCCCTCCCTCGCCCAATTCTAAAGGAGACACTCCTCTGA
GATCTACATCGCTAAAGTCAAAAGCTGACACACCTTTGAAAGCACCTAAG
AAGAATGGTGAAAGATTGTCTTCTACTGACTATAattttgcaTGTCGGAA
GGTGGTCAACATCAGTTTGGGAGACAATGGAAAGAAGCGATATGAGATTA
TCAGTATAAATTCTTCATGTTGCTCTGAAACTTCAAACTTAACGCCTCAA
ACAAATGTGTCTTTCAAAgaTGCTTTGGCAAAATCTTTTACATTTGATGG
TGccgaaaaaaagattttgaatttttgcggtcaaaaCGATGTAATTCCAT
TACAGAATGTTGTCGAGAAAAGTATTGAACGTAAAATTGGTGAAGGGTCG
TATGGAGAGGTTTATTTGAAGAAACAAAATCATTGTCTAACTGCTTTGAA
GATCGTCCCGGTTGGTCACAATACAACAGAACAAATGAAGCTGGATGATA
TACTATCAGAGATTGCCATTTCCAAAAAGCTGTCTTGTTGGAAGCAACAT
AGTCATGTAAGAGAACCACCTTTACCCCATGAAAAACTATCTTCATTCAT
TCACACAAAGCAAAACTGATTTGAtagttttttcttctctttttcttaTC
GAGCTCTTTATAGAATTATTTTCACATCGatgataaatatatttttttaa
ttttaggatAAGAAGCTCTATCCTGAAAATTGTGTTGAGGGCTTCATTGA
ATTGAAAAGTTTAAGTTATTGTAAAGGCCCATTCACACGACATTTGATTG
ATCTTTGGGAGGAATGGGAAGAAGATAAAAAGAATGACTGCCAAAACAAC
CACCCTGAAGTTTATAGTGAAAATCAAAGGTATGTGGTATTTGAGAACCG
ATTTGGGGGACAGGATCTCGAGAAATGCAAAATCACCACCATGAAAGAAG
CAATGAGCATCTTAAAACAACTGGTTGCCACCCTTGCATCTGCAGAACTT
TCTATGCAGTTCGAACACCGTGATTTGCACTGGGGCAACATTTTGATCGA
GAAAATGGAAGAGAAGAACAAGAATTTGTACATCCTGGTGGACGATGAAG
AATACGTGATACCTTCTTGTGGTCTTGTTGTCACCATCATTGACTTCACG
TTGGCTCGTCTTCTCAGTGAGGATTGTGTGGTGTATACGGATTTGAGTGA
AGAAGATGTTTTATTCGAAGGAGAGGGAGATGAACAATTCGATGTTTACC
GACAGATGAAATCGCATAACCATAACGAATGGGAGGCATTCAATCCCTTC
ACCAATGTGTTATGGATTCATTACATCACCAACAAACTAGCTTCCAAGCT
TCGTAAAAATGCCACCATGAAGAAGTTCGCTGCTCGTGTACTAGACTACA
AATCCTGTCACGATATCTTATTGGAGGACGTATTGTTTCGATGACGTAAT
AATTAATTGAAGAGGAGGTGACAACATTGCATGGCTGTGATAGCCATAGA
ATAATTCAGGTAACCTCTTCGTCTCGAAATGCCACTTTATTTTATGATCA
GTTGTTGCTGATCTGAACTACTGCAGAATTGGCAAGATTTGTGACAGGCT
TCGAACACAAAACAAGCTGAAAATCGCTTCTATCTTAGTGATTGGTCTAT
TTGGAACCCTTCTCTTACGACAGAAATATGGAGTCATTTGTAATTTCAGC
CCCTCTACGAGAGGGACGTTACGACGAACTCGTACAGGAAATCTAATACA
TTTTCAGTATTATACGCTGTTCAGCTTGTACATATGCAAAACACTGGATG
AGTAACTTTTGTTTTATAAAATTGCATATCAATTATAATGCCAATGGTAC
ACTAGATTTTTATAAATTGAATTATGTATATTAAATGACAGAAATCAATG
GGAAATTGTCTAACTGGATTTATTTTCTAGATCACTTAATCAGCTTAGGT
TGtaataaacatttattttttaaatttcatcattataTACTGTATATTTA
TTACTTTACAATGAAaactattttgataaaacaatgaATTTCAAACCTTG
ACATGATGCTTCTTTTCATTAT

Run BLAST on NCBI

transcript from alignment at scaffold_508:138229..143758-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069794 ID=TCONS_00069794|Name=TCONS_00069794|organism=Clytia hemisphaerica|type=transcript|length=5530bp|location=Sequence derived from alignment at scaffold_508:138229..143758- (Clytia hemisphaerica)
AAAACATATGGAAAGTATAAAACTTCTAAGAACCTCAAATCTGATGATTG
GGATGAAATTGTTGGTGTGAAAGCTGATATCAGGTATTTGTTTTTTTGTG
ATTTTTCTCACAGGGTTTGATACCATCCCAGACTATTATTGTCTTTTACA
AACACTTACATGTTCTATTAAATCCTACTTCCTGGTCACCATACTATTTA
TTGTTAGGGCCCCTCAAGTTTACAGTTGTTTGATTATTACTTTAGGCCTC
CAGAAGTGTCAGGGATTTCAATGTTAAGAAACAAGGAAAATAGAGGGCCC
AACACTGATTCACCAACCACTGATGAAACGTTTGATCAGAGTGAACATTT
TAGGGACCAAGGAGATGAAATTGATGAAGTGTTTCGCAAAGTAAAGCCAA
TTCAGATACATAAGATGGCTGGTTTGTTTGAGGGTTTATCAGTCAGCGAT
CATTCAACTCCCATTGTTTTATGCGAAGATACCCCTCCCTCGCCCAATTC
TAAAGGAGACACTCCTCTGAGATCTACATCGCTAAAGTCAAAAGCTGACA
CACCTTTGAAAGCACCTAAGAAGAATGGTGAAAGATTGTCTTCTACTGAC
TATAGTAAGTTTACTGATGTTACTAAAACAATATTTTTGATAAAAATAAA
AAAGTAAGATACAAAAAGTTGATCTATTATATTTGTCTCAATTTGTCCTA
GCACGCCAACTTGCATTCATTGTTTTTTTAGATTTTGCATGTCGGAAGGT
GGTCAACATCAGTTTGGGAGACAATGGAAAGAAGCGATATGAGATTATCA
GTATAAATTCTTCATGTTGCTCTGAAACTTCAAACTTAACGCCTCAAACA
AATGTGTCTTTCAAAGTATGAATTTTGTTTAATAGAAAAATTTCACAATT
AGCTAGGGACTTTGTGTGTGGTACCAATACCACACACTTGTGTAGCAAGG
AATGTTTGCAAATAAACTTTTTCTCAAAAAAGGTTTCTTGGTTTAATTTC
GAAGTAAGATGAGAACGTCTAGATACCAAAATAAATTTCCCTTTTTTTCT
TTTTGAAGGATGCTTTGGCAAAATCTTTTACATTTGATGGTGCCGAAAAA
AAGATTTTGAATTTTTGCGGTCAAAACGATGTAATTCCATTACAGAATGT
TGTCGAGAAAAGGTAGGGTTGCATTTTTCTTCGTTGAAGTGAGAAAAATT
TATTTTCAAAATTTTGGAGAAAAAAAGAATCCCTATTCCAGAAAGAGTAT
TAAGATTTTAAAAAATTATCTCTTATCTTAAAAATCGTTTAAAAACCAAG
GGGTCTCAAAAATTCCGACGGAAATATAAGGGGATACCTAAAAATTTGTC
TAAAAATCTAGCTGGTAAAAGGGTTCACGGGGTTCGACCTTTCAACAATA
ATCTCCGCCAAAATGACACAGGCAAACATTAAGGCTCAAAGCGTAAGCTT
CACACTGTCCAGAAAACTACATTTAGTCGTTAGATATGTTGACATAATGG
CGTCGATGTTTCCGTGGACTTAAAGCCCTATCAGTTTGGTTGAATTTAAC
CCGACATTCATATCAAGTACACAAAACTTAAAATTATGACGTTCATCATA
CCTTTTACTCTACTTACCACTACATACTAACTACCTACTCTACCATTCTG
CCTTCGAAAACAAATCATTTTGAAACGCCATTTTCTCGATAAACATCTAT
TTTTGTACACTGGTTTTAGTACCCCTCTCATCGAAGAAGTTTTCGTATTC
AATAAAGCTCACTCGTTCGTATTCTATTCTTTCAGTATTGAACGTAAAAT
TGGTGAAGGGTCGTATGGAGAGGTTTATTTGAAGAAACAAAATCATTGTC
TAACTGCTTTGAAGGTAACCAAATGTGCCTTCTCAGTTCTTAATCATGTT
TAAAAAAATAAGCTTTTGTAATTGAATTTTGAATATCATTTTTACAAGGT
TAAGGTTTGCATAAAATTGTCTGGTGGTATAAGATAAGGTATTAATAAAT
GAAAGCAGATATTAAATCTACATTGGATTTGCTTGGGTACCTTATAAAAT
TCAGGTGTGTTGGCTTAGGGCATAATGATTTCATAAAGCTATCCTGTATT
AGATCGTCCCGGTTGGTCACAATACAACAGAACAAATGAAGCTGGATGAT
ATACTATCAGAGATTGCCATTTCCAAGTAAAATTCTTTCATATCTTATTC
ACTTATAACCCCTTAATTGCCAATGTCGAGTATATTGGACATGCGCTATA
TAAGAGGGCGAAGCCCTCCTGTAATGCCCAGCTTATTTTAAATCGTCATT
TTTGGTCCAACTCATAGGAATTGCATTGTGCTTCATTGTGCTTCGTCAAG
CAAAAAAAAAATTAAAAGCTATTCTTTCTAGCGAGATTTTAAGCCAAAAA
GTCAAAAAATGCAAAAATTTGACAAAAATCCAATTTTTTGAGATTTTGAC
CGTTTTTGACCATTTTTGGTCAACGAGTGAACCCAGAACCTCCAAATTTG
GCCCCGTTTTACTTTTTTCTGTCTTCTAGCGGATTGATTTGGAAGTTTTA
CCACTGGGCATCTTCCCGTCGTTCAGTCAGGTCCGCAGCTGCTTTAATTC
CGCTAACCTACCCCCTTTTTAGCCGCCACCTACCGCGCGATTTATTTATT
CAAATGAAAGAGGAGACTCTCAGCTATCCAACGAGCTATGAATGAACGAG
CTTCTCACTCCTTCTAGATCCGGAGATTAAGCCTTTGAAGTTTGACATAG
TGATTTTCTTAAAAAACTTCTTAAAAAAGGACTGTGACACTTAAAGGGTT
AGTAAAGGTTCAGTAAACAATAAAAAACAATAAAAATAACGAGCTTCAAA
TTATACCAACACGAAAACCCATAAATTTCCATCTCCTTTTTTCAGAAAGC
TGTCTTGTTGGAAGCAACATAGTCATGTAAGAGAACCACCTTTACCCCAT
GAAAAACTATCTTCATTCATTCACACAAAGCAAAACTGATTTGATAGTTT
TTTCTTCTCTTTTTCTTATCGAGCTCTTTATAGAATTATTTTCACATCGA
TGATAAATATATTTTTTTAATTTTAGGATAAGAAGCTCTATCCTGAAAAT
TGTGTTGAGGGCTTCATTGAATTGAAAAGGTAGATAGACAAAATGTTTGT
CGGACTCTTGCTAAAAAACTTCCATATAATAGTCCCTATACTTTAGTTTG
CTTTTGTTCGAGGGAGTCTCCGATGTAAAAAAAAAAACAAACACAGCTCA
TTCTTGAATACTCAATATTATCTTACCTTTGTAGCTTCTTGCTTCTAGTT
TAAGTTATTGTAAAGGCCCATTCACACGACATTTGATTGATCTTTGGGAG
GAATGGGAAGAAGATAAAAAGAATGACTGCCAAAACAACCACCCTGGTAA
GAAACAACCAATAAGAACTTGTGTATTAAGTACTACTACTTTTTGAGTTT
ATAGCTTTGTATGTTTTTTATGCTTTTTAATTTTGAGCTTGCATGGTTAA
CATTGTAAAACGCATTCATTGTTTTAATCGCTTCAACTTAAGATTTATTG
ATTCTTATCAAAAGAACTCGCATTCTTTGCAATGGATTTAAATCAAACCC
CGTGCATTGTTTTTTATTAAATTATTTTTTTAAAAGCTATACGAAATTTT
CTCTCAAATGTTATTTATTGACGCCTAACCCATTTGTTTTTAGCTTCACA
GAAAACGGCTTCAGAGTCTTGCAAATTGTTAGACGCTTCTAATTAGGCAA
TTCATAGACCTTTCAATACGGCACCCGGCATCTTCCACAACGAAAAGCCA
GTAATTATTATTCTCACTTTCGAAATTCATACTTTGTTCTCTTTTGATTT
TCAGAAGTTTATAGTGAAAATCAAAGGTATGTGGTATTTGAGAACCGATT
TGGGGGACAGGATCTCGAGAAATGCAAAATCACCACCATGAAAGAAGCAA
TGAGCATCTTAAAACAAGTAAATTCTTTCTTCCCTCTATTCATCATGCAA
CCTACTCTTCGTTATTATTATAATAAAAGTTAGATTTGGTTGTCAGAGTT
GAAGTATTTAAATCCTCCCTTTATACTTGTTTTGCAGCTGGTTGCCACCC
TTGCATCTGCAGAACTTTCTATGCAGTTCGAACACCGTGATTTGCACTGG
GGCAACATTTTGATCGAGAAAATGGAAGAGAAGAACAAGAATTTGTACAT
CCTGGTGGACGATGAAGAATACGTGATACCTTCTTGTGGTCTTGTTGTCA
CCATCATTGACTTCACGTTGGCTCGTCTTCTCAGTGGTAAGCCTTGTTTG
TAAATGTTAAGTGCTATTAACTTTCTTATACACACTTTGAATTGAATATT
ACTGGATGCATACGAAAGCACGCACTAAAAAAGTTTTGTAGACGGTCATA
GGATGGAAGTATGTACAATATTTCATTATTTCAGAGGATTGTGTGGTGTA
TACGGATTTGAGTGAAGAAGATGTTTTATTCGAAGGAGAGGGAGATGAAC
AATTCGATGTTTACCGACAGATGAAATCGCATAACCAGTAAGTCCCCCCT
TCTCATACATGGTTTTTTCTTACCAACGAATAATTTATTGAATAAAATGC
TGAGTTTGCAATTATTAAAAACGAATCAAAATATGAATCTTAATCACTTT
ATGTTGTATTAATTATGTGTGTTCTTAGTTGAATACTGTAACTAAGAACG
CCTATAGTTTTCCTTCTTTTTCTTTCACAGTAACGAATGGGAGGCATTCA
ATCCCTTCACCAATGTGTTATGGATTCATTACATCACCAACAAACTAGCT
TCCAAGCTTCGTAAAAATGCCACCATGAAGAAGTTCGCTGCTCGTGTACT
AGACTACAAATCCTGTCACGATATCTTATTGGAGGACGTATTGTTTCGAT
GACGTAATAATTAATTGAAGAGGAGGTGACAACATTGCATGGCTGTGATA
GCCATAGAATAATTCAGGTAACCTCTTCGTCTCGAAATGCCACTTTATTT
TATGATCAGTTGTTGCTGATCTGAACTACTGCAGAATTGGCAAGATTTGT
GACAGGCTTCGAACACAAAACAAGCTGAAAATCGCTTCTATCTTAGTGAT
TGGTCTATTTGGAACCCTTCTCTTACGACAGAAATATGGAGTCATTTGTA
ATTTCAGCCCCTCTACGAGAGGGACGTTACGACGAACTCGTACAGGAAAT
CTAATACATTTTCAGTATTATACGCTGTTCAGCTTGTACATATGCAAAAC
ACTGGATGAGTAACTTTTGTTTTATAAAATTGCATATCAATTATAATGCC
AATGGTACACTAGATTTTTATAAATTGAATTATGTATATTAAATGACAGA
AATCAATGGGAAATTGTCTAACTGGATTTATTTTCTAGATCACTTAATCA
GCTTAGGTTGTAATAAACATTTATTTTTTAAATTTCATCATTATATACTG
TATATTTATTACTTTACAATGAAAACTATTTTGATAAAACAATGAATTTC
AAACCTTGACATGATGCTTCTTTTCATTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043459	XLOC_043459	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_508	supercontig	scaffold_508:138229..143758 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25341	0.954908	1.41359	0.146191	0.771508	0.402108	0.542043	0	0.660219	0.420787	2.83646	0	0.719832	0	0.332546	0.0942773	0.269517	0.295133	0	0	0.470927	0.312244	0	0.295117	0.203242	0.62118	0	0	0.209031	0.211944

Blast

[Close]

BLAST of TCONS_00069794 vs. Swiss-Prot (Human)
Match: HASP (Serine/threonine-protein kinase haspin OS=Homo sapiens GN=GSG2 PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 8.062e-49
Identity = 97/251 (38.65%), Postives = 153/251 (60.96%), Query Frame = 1

Query:  928 NCVEGFIELKSLSYCKGPFTRHLIDLWEEWEEDKKNDCQNNHPEVYSENQRYVVFENRFGGQDLE--KCKITTMKEAMSILKQLVATLASAELSMQFEHRDLHWGNILIEKMEEKNKNLYILVDDEEYVIPSCGLVVTIIDFTLARLLSEDCVVYTDLSEEDVLFEGEGDEQFDVYRQMKSHNHNEWEAFNPFTNVLWIHYITNKLASKLR-----KNATMKKFAARV-------LDYKSCHDILLEDVLF 1638
            N  EGFI L S+   +G +   L+  W+ +   K +   N+ P+ + ++Q ++V E  FGG DLE  + K++++  A SIL QL A+LA AE S++FEHRDLHWGN+     +   K L+  ++ +   IPSCGL V+IID+TL+RL  +  VV+ D+S ++ LF G+GD QFD+YR MK  N+N W  ++P++NVLW+HY+T+K+  ++          MK+   ++       L++ S  D+L +  LF
Sbjct:  551 NRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGS--ANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV--LLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLF 797

The following BLAST results are available for this feature:

BLAST of TCONS_00069794 vs. Swiss-Prot (Human)

BLAST of TCONS_00069794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HASP	8.062e-49	38.65	Serine/threonine-protein kinase haspin OS=Homo sap...	[more]

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TCONS_00069794 (transcript) - C. hemisphaerica