TCONS_00069766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069766
Unique NameTCONS_00069766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069766 ID=TCONS_00069766|Name=TCONS_00069766|organism=Clytia hemisphaerica|type=transcript|length=1399bp
ATACCTGCTTGCTTTCAGGAAGGTCTAATCCATTTTTATCAACAACGATC
AACGTCAAAATACTTTGCAAACAAACAGCGACCAGAGTGTTCCAACCAAA
TACTAAACCAAAACCATCCATCGTCAAACGATTTGCTATCTGAAAACTTT
AATCATGAAAAATATACTGACAAGTTGAAAACATATACCTTATCGACAAA
ATTATTGCTACTAATTAGTTTTGGCATTCATCTTCTGTATTCATACCAAC
TAAAGAAAACAACCCAACCTACCTTGCAACAGTCAAACTGAAAGCATACG
ATGCTCTGAAAATCACATACATGACGTAAGCGATCGTGACGTCACTGGTC
CACGCCATGTTAAAGACCATGGTGCTTTGCACGATAGAGAGACAACCAAT
TACAACTTCCGATACTGAGTTCCAATCAACTTTAGCGATAGAAAAGAGAA
ACACACAAACGGCACTTGTTATGGTGCCTGCAGCAAAAACAGCTCCATTG
TAAGCTTTCTTGATCTCATCACCTTGCAAAGCTGACCACaggttcatgac
gtaatcttctACTTGTAGGCCACCACACATTGCGATGGCCCAAAAACATG
ACCAttgtaaaagttttttatcagAATAACATGATTTGAAAgtgtgccaa
atatttttaaaatattgttgCAATCTAACGGAACAAGTTTGTGGGACAAT
GTTTTTGCTGGAAGTTATCTGGTCGGTTTGATCTTCATCGTCTATCCTTT
CCTCGTTGTCAAACCGTTCGAATCCTTTCTCCTCTTTCATGGTTCCAAAT
ACAGAACCTGTGACTTTAGGTAAGAAACAGGCAGCGATCACTGAAACAGC
CACACTGGCCAACGAAACGTAATTCAATTGTAATAGATTGACTGTATTTG
TCGATAACAGAAGTTGTCCACTCAAATCACCAACACCTTTGCCAGCTAAA
ACAGCAAGTCGAGTATAACTGGACACTTTCTGGTAATGCTCACGATCTAC
AAGTGCATAGATGTAGGAATAATAAGCAACTTCAGTGGCACTTGCAAGAC
CATAAGTCATTTGCATAATCTGCATGATCAAAACACCTTGACCCCAAACT
AAGATAACACGTGTGGCCAGGTAAGCTAAGGATTCAATGATGACTAGCGG
TTTATAACGTAGGAAGTCTGTGGTCATGAGTACTAAGAATAAGAAGACGA
GATACGAATATGTGGATATAGGGTAGATTTCATCAGAAATGGTTTTCTTG
GGGATGTTTTTAAATGTGCTGTTGAGGTATGGTGTGAGGAATGATTCCGA
TGGCTTCATCTCTTTGAAGAAACCATACAATGAAAGGATCAGGGTGGGCT
TCATCCATTCTCCAGCCATGTTTTCAGACTATGATGACAGCAGGTAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_507:88843..90314-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069766 ID=TCONS_00069766|Name=TCONS_00069766|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at scaffold_507:88843..90314- (Clytia hemisphaerica)
ATACCTGCTTGCTTTCAGGAAGGTCTAATCCATTTTTATCAACAACGATC
AACGTCAAAATACTTTGCAAACAAACAGCGACCAGAGTGTTCCAACCAAA
TACTAAACCAAAACCATCCATCGTCAAACGATTTGCTATCTGAAAACTTT
AATCATGAAAAATATACTGACAAGTTGAAAACATATACCTTATCGACAAA
ATTATTGCTACTAATTAGTTTTGGCATTCATCTTCTGTATTCATACCAAC
TAAAGAAAACAACCCAACCTACCTTGCAACAGTCAAACTGAAAGCATACG
ATGCTCTGAAAATCACATACATGACGTAAGCGATCGTGACGTCACTGGTC
CACGCCATGTTAAAGACCATGGTGCTTTGCACGATAGAGAGACAACCAAT
TACAACTTCCGATACTGAGTTCCAATCAACTTTAGCGATAGAAAAGAGAA
ACACACAAACGGCACTTGTTATGGTGCCTGCAGCAAAAACAGCTCCATTG
TAAGCTTTCTTGATCTCATCACCTTGCAAAGCTGACCACAGGTTCATGAC
GTAATCTTCTACTTGTAGGCCACCACACATTGCGATGGCCCAAAAACATG
ACCATTGTAAAAGTTTTTTATCAGAATAACATGATTTGAAAATGTGCCAA
ATATTTTTAAAATATTGTTGCAATCTAACGGAACAAGTTTNTATCAGAAT
AACATGATTTGAAAGTGTGCCAAATATTTTTAAAATATTGTTGCAATCTA
ACGGAACAAGTTTGTGGGACAATGTTTTTGCTGGAAGTTATCTGGTCGGT
TTGATCTTCATCGTCTATCCTTTCCTCGTTGTCAAACCGTTCGAATCCTT
TCTCCTCTTTCATGGTTCCAAATACAGAACCTGTGACTTTAGGTAAGAAA
CAGGCAGCGATCACTGAAACAGCCACACTGGCCAACGAAACGTAATTCAA
TTGTAATAGATTGACTGTATTTGTCGATAACAGAAGTTGTCCACTCAAAT
CACCAACACCTTTGCCAGCTAAAACAGCAAGTCGAGTATAACTGGACACT
TTCTGGTAATGCTCACGATCTACAAGTGCATAGATGTAGGAATAATAAGC
AACTTCAGTGGCACTTGCAAGACCATAAGTCATTTGCATAATCTGCATGA
TCAAAACACCTTGACCCCAAACTAAGATAACACGTGTGGCCAGGTAAGCT
AAGGATTCAATGATGACTAGCGGTTTATAACGTAGGAAGTCTGTGGTCAT
GAGTACTAAGAATAAGAAGACGAGATACGAATATGTGGATATAGGGTAGA
TTTCATCAGAAATGGTTTTCTTGGGGATGTTTTTAAATGTGCTGTTGAGG
TATGGTGTGAGGAATGATTCCGATGGCTTCATCTCTTTGAAGAAACCATA
CAATGAAAGGATCAGGGTGGGCTTCATCCATTCTCCAGCCATGTTTTCAG
ACTATGATGACAGCAGGTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043441XLOC_043441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069766-exon-scaffold_507-1575043694:89685..90314TCONS_00069766-exon-scaffold_507-1575043694:89685..90314Clytia hemisphaericaexon
TCONS_00069766-exon-scaffold_507-1575043694:88843..89611TCONS_00069766-exon-scaffold_507-1575043694:88843..89611Clytia hemisphaericaexon
TCONS_00069766-exon-scaffold_507-1510915933:89685..90314TCONS_00069766-exon-scaffold_507-1510915933:89685..90314Clytia hemisphaericaexon
TCONS_00069766-exon-scaffold_507-1510915933:88843..89611TCONS_00069766-exon-scaffold_507-1510915933:88843..89611Clytia hemisphaericaexon
TCONS_00069766-exon-scaffold_507-1491911889:89685..90314TCONS_00069766-exon-scaffold_507-1491911889:89685..90314Clytia hemisphaericaexon
TCONS_00069766-exon-scaffold_507-1491911889:88843..89611TCONS_00069766-exon-scaffold_507-1491911889:88843..89611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:88843..90314 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.563084	0.375096	0	0	0	0.0953111	0	0	0.137596	0.419089	1.474	0	2.55138	2.44212	3.15908	2.57226	4.52327	3.31321	0.89357	0.893573	2.31836	2.63705	1.67284	1.31775	2.04594	2.32344	1.93866	1.89772	1.38714	1.10227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002666Folate_carrier
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00069766 vs. Swiss-Prot (Human)
Match: S19A3 (Thiamine transporter 2 OS=Homo sapiens GN=SLC19A3 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 5.252e-81
Identity = 165/478 (34.52%), Postives = 262/478 (54.81%), Query Frame = -1 
Query:    5 NMAGEWMKPTLILSLYGFFKEMKPSESFLTPYLNSTFKNIPKKTISDEIYPISTYSYLVFLFLVLMTTDFLRYKPLVIIESLAYLATRVILVWGQGVLIMQIMQMTYGLASATEVAYYSYIYALVDREHYQKVSSYTRLAVLAGKGVGDLSGQLLLSTNTVNLLQLNYXXXXXXXXXXXXACFLPKVTGSVFGTMKEEKGFERFDNEERI------------DDEDQTDQITSS---------KNIVPQTCSVRL-QQYFKNIWHTFKSCYSDKKLLQWSCFWAIAMCGGLQVEDYVMNLWSALQGDEIKKAYNGAVFAAGTITSAVCVFLFSIAKVDWNSVSEVVIGCLSIVQSTMVFNMAWTSDVTIAYVMYVIFRASYAFSLTVAR*VGLFSLVGMNTEDECQN*LVAIILSIRYMFSTCQYIFHD*SFQIANRLTMDGFGLVFGWNTLVAVCLQSILTLIVVDKNGLDLPESKQ 1372
            +++  W+ PT+IL L+GFF  M+PSE FL PYL+   KN+    I++EI+P+ TYSYLV L  V + TD++RYKP++I++ ++++ T ++L++GQGV  MQ+++  YG+ +A EVAYY+YIY++V  EHYQ+VS Y R   LA    G +  QLL+S   ++   LN +SLASV+V+ + + FLP    S+F   K  +  ++  +   +            +++  T +I S+          ++ P   +V +  Q+F+++    K CYS K+L  WS +WA A  G  QV +YV  LW      +    YNGAV A  T   AV  F     KV+W+ + E+ +   S+V +  +F M +T+++   Y  Y+IF++SY   +T+A                                           FQIA  L ++ + LVFG NT +A+ +Q+I+T+IVVD+ GL+LP S Q
Sbjct:    7 SLSSSWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWTYSYLVLLLPVFVLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAEVAYYAYIYSVVSPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASVSVAFLFSLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTSGKLNKGQLNSLKPSNVTVDVFVQWFQDL----KECYSSKRLFYWSLWWAFATAGFNQVLNYVQILWDYKAPSQDSSIYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSLFLMHYTANIWACYAGYLIFKSSYMLLITIA------------------------------------------VFQIAVNLNVERYALVFGINTFIALVIQTIMTVIVVDQRGLNLPVSIQ 438
The following BLAST results are available for this feature:
BLAST of TCONS_00069766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S19A35.252e-8134.52Thiamine transporter 2 OS=Homo sapiens GN=SLC19A3 ... [more]
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