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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069062 ID=TCONS_00069062|Name=TCONS_00069062|organism=Clytia hemisphaerica|type=transcript|length=4010bpRun BLAST on NCBI protein sequence of TCONS_00069062-protein >TCONS_00069062-protein ID=TCONS_00069062-protein|Name=TCONS_00069062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=809bp MSSGDEVEAFEITDQDLESELNPGFHRKQTKEQAIYGVWANSDDEEEGNYRun BLAST on NCBI transcript from alignment at scaffold_493:36134..61164+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069062 ID=TCONS_00069062|Name=TCONS_00069062|organism=Clytia hemisphaerica|type=transcript|length=25031bp|location=Sequence derived from alignment at scaffold_493:36134..61164+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_493:36134..61164+ >TCONS_00069062 ID=TCONS_00069062|Name=TCONS_00069062|organism=Clytia hemisphaerica|type=CDS|length=58320bp|location=Sequence derived from alignment at scaffold_493:36134..61164+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069062 vs. Swiss-Prot (Human)
Match: TFP11 (Tuftelin-interacting protein 11 OS=Homo sapiens GN=TFIP11 PE=1 SV=1) HSP 1 Score: 653.284 bits (1684), Expect = 0.000e+0 Identity = 365/833 (43.82%), Postives = 529/833 (63.51%), Query Frame = 3
Query: 1455 FEITDQDLESELNPGFHRK-QTKEQAIYGVWANSD-DEEEGNYQKKTRKKFGLQADVPMGFVSGGKFHXXXXXXXXXXXXXXXXMGFPALKKEPVKEQSQQEK---TKNKSYTFNDPSLR------KASKNFGAWEKYSNGFASXXXXXXXXXXXXXXXXTEDGIVEPVQAHKRGGRGAIGHYGAERPKNKFSSEPVYDTDXXXXXXXXXXXXXLHQWKKT-GQEKKTPKYVYKTAEEVKKSGKT--KSLAPLLSHSNVKVVDMTGKETKVLQGYSSLSHQHAKPD------TEDNVKPAEEEK--DFDVPELIYNLNLLVDLTESDILQTDRQLRFERDNIVNYTHEVERLEKVCLEEENEIDNLEHVLTIIERCKQGLQPDKDEPLSLEGLIQCFQTLQDSFYEEFKLYDLDKLVVPLGFPLLTRHFSSWNPFKDPTHGIDVVKLWKEVLQDNHQTQYTQSNNEQRSMEPYERLLWELWMPHIRTAVNLWLPKTSDALIPVMEAWTQLLPDWINSNILDQLILPKLQAAVDAWNPLTDPTPVHSWLHPWLPIMANRLEGFYPQIRQKFGAALLNWHPSDPSAKVILEPWIKVFSKGTMEAFLLRTIYPKLEQCVIEFQINPHQQDLQPFNWLMAWIGVISFHHMVSLLEKHFFPKWLQVLRQWLTNTPNYDEVTKWYLGWKTMFSEDFMSHPTLKEHFNRALQLMNQAVTGTV----QPGARENVAYLTSTXXXXXXXXXXLKEKIQASSQGSGGM-------PSRFKDLVEKAAEDNGLLFIPLPNRRHEGKAVYTFGKCVIYIDRDVVFYSTEGKWKPSSLQELVDLAR 3854
FEITD DL++E NP R QTKE+A YGVWA D D+E ++ K + + P+ F+S G ++ + ++ +++PVK+ + K K+ PS + K+ +FG+WE+++ G K+++KMGY G+GLGK GI+ P++A +R G+GA+G YG+ER PV D+ E+ ++ ++L QW+K KK PKY YKT EE+K G+ K AP S VKV+DMTG+E KV YS +SH+H PD ++ + +E K F +PEL +NL LL+DLTE +I+Q DRQL++ERD +VN HE+E++ +V EE I NL VL ++E C++ +QPD PL+L+ + F+TLQD +YEE+++ D L V + +PL+ +F W+P KD T+G +++ WK +L+++ Q + S + + RL+WE+WMP +R V W P+ D ++ +++W ++P WI NILDQLI PKLQ V+ WNPLTD P+HSW+HPWLP+M RLE Y IR K +AL WHPSD SAK+IL+PW VF+ G+ EAF+++ I PKL C+ E INPHQQ + F W++ W G+IS +V LLEKHFFPKWLQVL WL+N+PNY+E+TKWYLGWK+MFS+ ++HP++K+ FN AL +MN+AV+ V QPGAREN+AYLT TERR++ + A++E+ +A + G+ P FKDL+E AE++ ++F+P+ +RHEGK +YTFG+ VIYIDR VVF E W P+SLQ L+D+A+
Sbjct: 24 FEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYS----APVNFISAG---------LKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSERTTQSMQDFPVVDS---EEEAEEEFQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQSQQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMTEVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDRVDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLEND---QLLSHGGQDLSADAFHRLIWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWNPLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFTPGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETKAEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK 837 The following BLAST results are available for this feature:
BLAST of TCONS_00069062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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