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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068844 ID=TCONS_00068844|Name=TCONS_00068844|organism=Clytia hemisphaerica|type=transcript|length=3014bpRun BLAST on NCBI protein sequence of TCONS_00068844-protein >TCONS_00068844-protein ID=TCONS_00068844-protein|Name=TCONS_00068844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=884bp MAAIRHSLQQDIFRPSEEALYAVVNVVKVGGGKKKEKKTTFLCAAVTKEKRun BLAST on NCBI transcript from alignment at scaffold_49:315151..351408- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068844 ID=TCONS_00068844|Name=TCONS_00068844|organism=Clytia hemisphaerica|type=transcript|length=36258bp|location=Sequence derived from alignment at scaffold_49:315151..351408- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:315151..351408- >TCONS_00068844 ID=TCONS_00068844|Name=TCONS_00068844|organism=Clytia hemisphaerica|type=CDS|length=66375bp|location=Sequence derived from alignment at scaffold_49:315151..351408- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068844 vs. Swiss-Prot (Human)
Match: EXOC1 (Exocyst complex component 1 OS=Homo sapiens GN=EXOC1 PE=1 SV=4) HSP 1 Score: 605.134 bits (1559), Expect = 0.000e+0 Identity = 350/910 (38.46%), Postives = 537/910 (59.01%), Query Frame = 1
Query: 25 MAAIRHSLQQDIFRPSEEALYAXXXXXXXXXXXXXXXXTTFLCAAVTKEKPFQVRIYQIQKSEK--FFKKKFCWQLSDLKAVDGISEKKDILEFDLHFEKVYHWAASRQHDKQEFIETLWMLGNRYAGSKKPKFQNVSQKLLQEDLSNRLFDGAKGVSTIGSNEGQDDYQKLTPKEEKDLNAILSKVEDALNNVEVFTDQLSSELQQLEYINITSLMGSEQQARDLLSLIDKSVEELDVLDNRLTSYDDCLKRVSEQMDQMEFKDNRMEIERINNKKLLEEIKYIVGKLDISQRHISSLEEGDLYNPLGITECISAAKVLLEAFHTPFKPGITDLRAVQDQLTRIMTLKTDFAQRFYLHLDK-FISQHSNIDHVSYKPANDLSLQPHDSVHTDFTPYVELMKWLKDLDNSKYLEIKSHYEQSFTRTYEKEFREYLEFAKMKASLKVKGNRSLQALQIXXXXXXXXXXXXXXXXXXXXXXXRTTSKESIDSTA---SVESSLISAGNSG----------QFDQVFDMVLSEIEPYVMTEQEFCQMFF----HLRWPGDNADPKEEDEVDGALMSRQRFAEHKLEAPH-----RDMMKNIFGFMEIEMQNLITYGEALHPHNILYAMYRIQNQASHLVTSHTTGAPPTFLGTLFGGWLIFTKRLFDKYVEGLSRQINEQKVQKKKRTGILPDVLAVERFFKASEKIFQGSDRRSEIDKAYSKLIRVLFVKIEEVAEENDKPPPEILMFENYHYLHSSIRGLKNQALDDEKKQAEQMYKDAMNQYIATRLGRPLERMSRFFQGIESCINSGVRMEDIGYQIKLNQQELRAVLKDYPPKEVKKGLEVLYKKIEKYVT-EAGLHQVLWHNFQEAFVRQYERYQELVELCYPGSSIILPVTVKQILEFFSNIAQSH 2676
M AI+H+LQ+DIF P++E L ++VNV K G KK FLCA VT E+P QV++ +++KS+K F+K++ W L DL VD K+ EFDLHFEK+Y W AS +K FI +W L RY KK F NVS +LL+E + + G T G E D+YQ+L +EE+D+ ++ E A++N E F ++LS ELQ L+ NI S+M SE+Q L+ L+D++++E+D ++ +L+SY++ L+ V EQMDQ+ ++ + + NN KLL EI+++V +D+++ HI +L+EGDL + GI C +AA LL+ + +PG L AV+ Q R L+ FA+R HL+ F+ Q + + + +L+L H H D Y +LM+WLK D KY + +Y +R YE+E +++ E AK+K + K ++ L S ++ K + +K S+ S+ S SSL+ GN +FD++F+ VLSE+EP + EQ+F FF H PG A E +++DG +SRQ L R MM IF +E E+ NLI G+ + N LY + ++ SH V + P +FL T G L+ KR FDK + RQ+ E K+ KK + GILP V E F +E IF+ ++RR ++DKAY+KLIR +FV +E+VA E+ K P +++M EN+H++ +++ LK L+ EKK+A+Q Y D + Y+ LG+PLE+++ FF+G+E+ + G+R E++ YQ+ N+QELR V+K+YP KEVKKGL+ LYKK++K++ E L QV+WH+ Q+ F+RQY+ ++ L+ CYPGS + + T++ IL++ S+IAQSH
Sbjct: 1 MTAIKHALQRDIFTPNDERLLSIVNVCKAGKKKK----NCFLCATVTTERPVQVKVVKVKKSDKGDFYKRQIAWALRDLAVVDAKDAIKENPEFDLHFEKIYKWVASSTAEKNAFISCIWKLNQRYL-RKKIDFVNVSSQLLEESVPS----GENQSVTGGDEEVVDEYQELNAREEQDIEIMMEGCEYAISNAEAFAEKLSRELQVLDGANIQSIMASEKQVNILMKLLDEALKEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLVNHMDLAKGHIKALQEGDLASSRGIEACTNAADALLQCMNVALRPGHDLLLAVKQQQQRFSDLRELFARRLASHLNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLKSTDYGKYEGLTKNYMDYLSRLYEREIKDFFEVAKIKMTGTTKESKKFATLPRKESAVKQETESLHGSSGKLTGSTSSLNKLSVQSSGNRRSQSSSLLDMGNMSASDLDVADRTKFDKIFEQVLSELEPLCLAEQDFISKFFKLQQHQSMPGTMA---EAEDLDGGTLSRQHNCGTPLPVSSEKDMIRQMMIKIFRCIEPELNNLIALGDKIDSFNSLYMLVKM----SHHVWTAQNVDPASFLSTTLGNVLVTVKRNFDKCISNQIRQMEEVKISKKSKVGILPFVAEFEEFAGLAESIFKNAERRGDLDKAYTKLIRGVFVNVEKVANESQKTPRDVVMMENFHHIFATLSRLKISCLEAEKKEAKQKYTDHLQSYVIYSLGQPLEKLNHFFEGVEARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKVDKHLCEEENLLQVVWHSMQDEFIRQYKHFEGLIARCYPGSGVTMEFTIQDILDYCSSIAQSH 894 The following BLAST results are available for this feature:
BLAST of TCONS_00068844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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