|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068481 ID=TCONS_00068481|Name=TCONS_00068481|organism=Clytia hemisphaerica|type=transcript|length=1808bp
TGGCTTTTGAGAAAATTCGGGTCGAATCAAAGAATGCTCTTTTGATCTTG
GGAATGATGGCTTTCATGGACaatcgaaaaatcaataaaaagacaTTCAG
TTATTTTGATAGAGTTGACGAATTTGAATTAAATGAAATAATCAATCTGC
TTTGTCAATATTCATTGGTCAACGAGCGGAACGAATGTTTAGAAATTCAC
AGTCTTGTGCAAAAAGTTATCCGATATCGTATCGAACAAAAACAATTTGT
CGAGGATGAATGTCCGTTGACACTTCTTGAAGATGTTCTTTTGAAAATCG
AGGTTTCCGTTAAAGATTTGTTTGCAAATGCTGACTACGAGGATTTATGG
TACATTCATATTTTTCGTTTGATCATGAGTGGTGCACTCAAAACTATCAA
CTTTCATGTTTCCCTTGTGTTAAATATCGCCATAGGCAGAATGGAGATGG
AGAACCTATACCAAATTTCTGAacttctttcaaaagttttgttaAAACAA
TATAGGTTGTTTCGAGATGTGGAAACTTTTCACAACCTGTTGGTTGTTCA
TCGTCGTTTCATAAATGCGTCAAGTCAATTAGGTTTACTTAATTTGAATG
agatttttgcttttgaaaaagAGTTTTCCTCAGAGCTTGAAGAAAATCAT
GTAGAAGTTTACCGTTGGAAGCTACAGCAAGCTGAGACATATAATATACA
TGGAAGAGTGTCGTTATGCAATGATATCGTTCGAAATTTATTCAATGAAC
TAGTCAAGAAGAAAGGATTTGATTATATTAAATTAAGATTGGCGAGTTTT
CTCACTGTAAGGGATATGGAAGTATTGTTGAATTCCGTTGACACAAATAA
TCTCAGTGACGCTGACTTTTTGGTGTATTATTATGCAAAATGTTCTTTAT
ACATCAANAGTTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACGC
TGACTTTTTGGTGTATTATGGTGCAAAATGTTCTTTATACATCAGGAACG
GTTGCTTTGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGAACATTTA
CACAGAAAACAATTTTCTCGATCGTCTTATTTTAACTTCACACAAAAGCA
TTGCTTTTTACTTTACAAGAAAGGAAATTACAACGAAGCATTACTTGTAT
GCGATGAAATTAAACGAGATTTTTTTACTGATGCAGCTGTTTTAGTTTCG
GAAGCCttgattttgatcaaattaGGAAAGTTCAACGACGCAGAAGTGTC
AATTGATGACTGGAACCAATGCAATAATGCATTTATCATTAGAATCAGTT
CATACCTGAAATTTCGAAAGCACGACTTCGAGGCCGTAGAAAATCTCCTC
ACAAATGTGGAAGATGAGGATTtgtcaaatcttttgtttttggtAAAGGA
ATATGCGAAACTGCATCGANGACTTTGAGGCAGTAGAAAATCTCCTCACA
AATGTGGAAGATGAGGATTtgtcaaatcttttgtttttggtAAAGGAATA
TGCGAAACTGCATCGACAACTAGAAAATAATAAATCGAGAGAATTTGTTG
AACGATGtttacaaatgaaaaaaattgtaaatgagTTATTTCAAGTACAA
TTGGAttcgatttatttttgaaatgctATTTTATCGAATTATGATTAGAA
TCAGATCTTACACTGACAAGTTTTTTCAAGTAGCTACAATGTAATTGTTG
TATTGACTTGGCCTGTAAAATCTTAACTGTGTAGCCTTTTTGCTTTAGAA
GTTGTGTTTTTTCCATTATGGATatttatatttttccaaaaaatcataCT
AAAATAAG Run BLAST on NCBI transcript from alignment at scaffold_485:133974..135781+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068481 ID=TCONS_00068481|Name=TCONS_00068481|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at scaffold_485:133974..135781+ (Clytia hemisphaerica)
TGGCTTTTGAGAAAATTCGGGTCGAATCAAAGAATGCTCTTTTGATCTTG
GGAATGATGGCTTTCATGGACaatcgaaaaatcaataaaaagacaTTCAG
TTATTTTGATAGAGTTGACGAATTTGAATTAAATGAAATAATCAATCTGC
TTTGTCAATATTCATTGGTCAACGAGCGGAACGAATGTTTAGAAATTCAC
AGTCTTGTGCAAAAAGTTATCCGATATCGTATCGAACAAAAACAATTTGT
CGAGGATGAATGTCCGTTGACACTTCTTGAAGATGTTCTTTTGAAAATCG
AGGTTTCCGTTAAAGATTTGTTTGCAAATGCTGACTACGAGGATTTATGG
TACATTCATATTTTTCGTTTGATCATGAGTGGTGCACTCAAAACTATCAA
CTTTCATGTTTCCCTTGTGTTAAATATCGCCATAGGCAGAATGGAGATGG
AGAACCTATACCAAATTTCTGAacttctttcaaaagttttgttaAAACAA
TATAGGTTGTTTCGAGATGTGGAAACTTTTCACAACCTGTTGGTTGTTCA
TCGTCGTTTCATAAATGCGTCAAGTCAATTAGGTTTACTTAATTTGAATG
agatttttgcttttgaaaaagAGTTTTCCTCAGAGCTTGAAGAAAATCAT
GTAGAAGTTTACCGTTGGAAGCTACAGCAAGCTGAGACATATAATATACA
TGGAAGAGTGTCGTTATGCAATGATATCGTTCGAAATTTATTCAATGAAC
TAGTCAAGAAGAAAGGATTTGATTATATTAAATTAAGATTGGCGAGTTTT
CTCACTGTAAGGGATATGGAAGTATTGTTGAATTCCGTTGACACAAATAA
TCTCAGTGACGCTGACTTTTTGGTGTATTATTATGCAAAATGTTCTTTAT
ACATCAANAGTTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACGC
TGACTTTTTGGTGTATTATGGTGCAAAATGTTCTTTATACATCAGGAACG
GTTGCTTTGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGAACATTTA
CACAGAAAACAATTTTCTCGATCGTCTTATTTTAACTTCACACAAAAGCA
TTGCTTTTTACTTTACAAGAAAGGAAATTACAACGAAGCATTACTTGTAT
GCGATGAAATTAAACGAGATTTTTTTACTGATGCAGCTGTTTTAGTTTCG
GAAGCCttgattttgatcaaattaGGAAAGTTCAACGACGCAGAAGTGTC
AATTGATGACTGGAACCAATGCAATAATGCATTTATCATTAGAATCAGTT
CATACCTGAAATTTCGAAAGCACGACTTCGAGGCCGTAGAAAATCTCCTC
ACAAATGTGGAAGATGAGGATTtgtcaaatcttttgtttttggtAAAGGA
ATATGCGAAACTGCATCGANGACTTTGAGGCAGTAGAAAATCTCCTCACA
AATGTGGAAGATGAGGATTtgtcaaatcttttgtttttggtAAAGGAATA
TGCGAAACTGCATCGACAACTAGAAAATAATAAATCGAGAGAATTTGTTG
AACGATGtttacaaatgaaaaaaattgtaaatgagTTATTTCAAGTACAA
TTGGAttcgatttatttttgaaatgctATTTTATCGAATTATGATTAGAA
TCAGATCTTACACTGACAAGTTTTTTCAAGTAGCTACAATGTAATTGTTG
TATTGACTTGGCCTGTAAAATCTTAACTGTGTAGCCTTTTTGCTTTAGAA
GTTGTGTTTTTTCCATTATGGATatttatatttttccaaaaaatcataCT
AAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068481-exon-scaffold_485-1491911889:133974..135781 | TCONS_00068481-exon-scaffold_485-1491911889:133974..135781 | Clytia hemisphaerica | exon |
| TCONS_00068481-exon-scaffold_485-1510915933:133974..135781 | TCONS_00068481-exon-scaffold_485-1510915933:133974..135781 | Clytia hemisphaerica | exon |
| TCONS_00068481-exon-scaffold_485-1575043694:133974..135781 | TCONS_00068481-exon-scaffold_485-1575043694:133974..135781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:133974..135781 + |
Blast
The following BLAST results are available for this feature:
|
