|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068218 ID=TCONS_00068218|Name=TCONS_00068218|organism=Clytia hemisphaerica|type=transcript|length=1652bp
GGCTTATGTATAGCTTTTACTTGAAATACCTTTTGACAAACATAATTGAT
GTGAAAATGCAGTAAATTTGGACTTAACTCTTAATTTTGTATACTAtcca
taaaattcaaattttgaaaaatattttccaataaAAATACTATTATAAAC
TATAAAAAATATATCCATCAATCTATTTATATCTTCTATTATTTTATAAA
CATTAgaatttaaaattatctcattAACAAAGTCATATAAATTAGCTAAA
TCGTTTCAAACAGCTTTGGCGAGTTTGGAAGGAATCCGCAAGGTTCAGGT
TTCGTTGCCAAAAACTTTCATTCCAAAAGTTTGTAAATGGGGTCAAAAAG
ATACCTCTTCAGGAAAATTAGACTATAGGGGCAGGATTCGGATGTCCAGG
CTGGAATTGAATTCTTGATTTGCCGTCACTctaccctagattttggaggt
agGTCAGTCTGTTTTTCATTTTGGTCATTAAtggaatttttgtttacatt
ttgtaatttctgaagaaaaaaaaattctcttcgtCGAAATAGCAATAAAA
GTTTTTAGGTCGACAAGTCTAGAGAAGAGTCAGTCGTCTGACGGCAAACC
AGCCCCAGTTAGCACCTCCAACCCTCCCACAACGGGTTAAAAATATAATA
CGAAAGTATATAATACGAAAATATTATAATTTGAAAGTTATGCAACTTTT
CAATACCTGTTACCACACATGATGTTTGAAATAATACTCTGTGTACACTT
GAccttgtcaaaaaaaaaacaattagaaaTGTAAATTGACCGCAATTTGA
TATCAACTCAAGAGAACTAGCTTTATAGGCATACATGTGGATTAATCTTC
GCAATTTTATCCAAATTTTGGCAGCTAATTTTTGTGTGCAGCTGCATGTT
TTGTTATGAGAGAAGGCATTTCTAAATTGtgataaaaatataattataaT
TAAAATAATCTAGGAACAATAAAGTTAGTTCTCAACTTATACTCTTGAAA
TTCTGGATACCTAGAcaaagatttttctttctttaacatTCTCGGATAAA
ACAAAACTGTAATCATTAACAATAGCACAGCGAGCGGTGTAATACTTTCC
GCTAATATGCTCCAACCAAAATAAATCAACACTTCACCCAAGAAATTCGG
ATTACGCGTGCGCGAGAAAAAACCATCCGTGATAAGACCTTTCTTCGTTT
TCAAGATGAAATATTTCTGAGAATCGGCTccaaagtgaaagaaaaatccA
ACCAAACATATCGGAACTGCAGTCAAAAGAGTCACCAAATGGGGCACAAT
ACGCGAGCTAATCAAAACATAGGGCGCTATCCAGTAAACGCCCAATACAC
AATACGCAGAAACAAATTCCAGAATATTCATTTCAGCATTAAACGCAGGG
TCAGGATATATTGCTTCTTTGAATAGCCAGCATACACAATAACCAGTGTG
TAGACCAAAATATACGATAGGTCCAATAGtatagttcttataatgttCCA
TTAAAAGTAGTATAACAAACGGGGTGGTGATTTTGTGAAGGTTGATGAAA
TGTCGCTGTTTGAATACCATGGTCGGAATGTTTCTGATATGTACCTGAAA
ATAGAAATAAGGGAAATATCAACGTTGTTTCAAATTCATATTTCTATCTC
CG Run BLAST on NCBI transcript from alignment at scaffold_480:5481..7718- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068218 ID=TCONS_00068218|Name=TCONS_00068218|organism=Clytia hemisphaerica|type=transcript|length=2238bp|location=Sequence derived from alignment at scaffold_480:5481..7718- (Clytia hemisphaerica)
GGCTTATGTATAGCTTTTACTTGAAATACCTTTTGACAAACATAATTGAT
GTGAAAATGCAGTAAATTTGGACTTAACTCTTAATTTTGTATACTATCCA
TAAAATTCAAATTTTGAAAAATATTTTCCAATAAAAATACTATTATAAAC
TATAAAAAATATATCCATCAATCTATTTATATCTTCTATTATTTTATAAA
CATTAGAATTTAAAATTATCTCATTAACAAAGTCATATAAATTAGCTAAA
TCGTTTCAAACAGCTTTGGCGAGTTTGGAAGGAATCCGCAAGGTTCAGGT
TTCGTTGCCAAAAACTTTCATTCCAAAAGTTTGTAAATGGGGTCAAAAAG
ATACCTCTTCAGGAAAATTAGACTATAGGGGCAGGATTCGGATGTCCAGG
CTGGAATTGAATTCTTGATTTGCCGTCACTCTACCCTAGATTTTGGAGGT
AGGTCAGTCTGTTTTTCATTTTGGTCATTAATGGAATTTTTGTTTACATT
TTGTAATTTCTGAAGAAAAAAAAATTCTCTTCGTCGAAATAGCAATAAAA
GTTTTTAGGTCGACAAGTCTAGAGAAGAGTCAGTCGTCTGACGGCAAACC
AGCCCCAGTTAGCACCTCCAACCCTCCCACAACGGGTTAAAAATATAATA
CGAAAGTATATAATACGAAAATATTATAATTTGAAAGTTATGCAACTTTT
CAATACCTGTTACCACACATGATGTTTGAAATAATACTCTGTGTACACTT
GACCTTGTCAAAAAAAAAACAATTAGAAATGTAAATTGACCGCAATTTGA
TATCAACTCAAGAGAACTAGCTTTATAGGCATACATGTGGATTAATCTTC
GCAATTTTATCCAAATTTTGGCAGCTAATTTTTGTGTGCAGCTGCATGTT
TTGTTATGAGAGAAGGCATTTCTAAATTGTGATAAAAATATAATTATAAT
TAAAATAATCTAGGAACAATAAAGTTAGTTCTCAACTTATACTCTTGAAA
TTCTGGATACCTAGACAAAGATTTTTCTTTCTTTAACATTCTCGGATAAA
ACAAAACTGTAATCATTAACAATAGCACAGCGAGCGGTGTAATACTTTCC
GCTAATATGCTCCAACCAAAATAAATCAACACTTCACCCAAGAAATTCGG
ATTACGCGTGCGCGAGAAAAAACCATCCGTGATAAGACCTTTCTTCGTTT
TCAAGATGAAATATTTCTGAGAATCGGCTCCAAAGTGAAAGAAAAATCCA
ACCAAACATATCGGAACTGCAGTCAAAAGAGTCACCAAATGGGGCACAAT
ACGCGAGCTAATCAAAACATAGGGCGCTATCCAGTAAACGCCCAANAAAA
AAAAACAATTAGAAATGTAAATTGACCGCAATTTGATATCAACTCAAGAC
AACTAGCTTTATAGGCATACATGTGGATTAATCTTCGCAATTTTATCCAA
ATTTTGGCAGCTAAATTTTGTGTGCAGCTGCATGTTTTGTTACGAGAGAA
GGCATTTCTAAATTGTGATAAAAAGATAATTGTAATTAAAATAATCTAGG
AACAATAAAGTTAGTTCTCAACTTATACTCTTGAAATTCTGGATACCTAG
ACAAAGATTTTTCTTTCTTTAACATTCTCGGATAAAACAAAACTGTAATC
ATTAACAATAGCACAGCGAGCGGTGTAATACTTTCCGCTAATATGCTCCA
ACCAAAATAAATCAACACTTCACCCAAGAAATTCGGATTACGCGTGCGCG
AGAAAAAACCATCCGTGATAAGACCTTTCTTCGTTTTCAAGATGAAATAT
TTCTGAGAATCGGCTCCAAAGTGAAAGAAAAATCCAACCAAACATATCGG
AACTGCAGTCAAAAGAGTCACCAAATGTGGCACAATACGCGAGCTAATCA
AAACATAGGGCGCTATCCAGTAAACGCCCAATACACAATACGCAGAAACA
AATTCCAGAATATTCATTTCAGCATTAAACGCAGGGTCAGGATATATTGC
TTCTTTGAATAGCCAGCATACACAATAACCAGTGTGTAGACCAAAATATA
CGATAGGTCCAATAGTATAGTTCTTATAATGTTCCATTAAAAGTAGTATA
ACAAACGGGGTGGTGATTTTGTGAAGGTTGATGAAATGTCGCTGTTTGAA
TACCATGGTCGGAATGTTTCTGATATGTACCTGAAAATAGAAATAAGGGA
AATATCAACGTTGTTTCAAATTCATATTTCTATCTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068218-exon-scaffold_480-1575043694:6401..7718 | TCONS_00068218-exon-scaffold_480-1575043694:6401..7718 | Clytia hemisphaerica | exon |
| TCONS_00068218-exon-scaffold_480-1575043694:5481..5814 | TCONS_00068218-exon-scaffold_480-1575043694:5481..5814 | Clytia hemisphaerica | exon |
| TCONS_00068218-exon-scaffold_480-1510915933:6401..7718 | TCONS_00068218-exon-scaffold_480-1510915933:6401..7718 | Clytia hemisphaerica | exon |
| TCONS_00068218-exon-scaffold_480-1510915933:5481..5814 | TCONS_00068218-exon-scaffold_480-1510915933:5481..5814 | Clytia hemisphaerica | exon |
| TCONS_00068218-exon-scaffold_480-1491911889:6401..7718 | TCONS_00068218-exon-scaffold_480-1491911889:6401..7718 | Clytia hemisphaerica | exon |
| TCONS_00068218-exon-scaffold_480-1491911889:5481..5814 | TCONS_00068218-exon-scaffold_480-1491911889:5481..5814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:5481..7718 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
Blast
The following BLAST results are available for this feature:
|
