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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068203 ID=TCONS_00068203|Name=TCONS_00068203|organism=Clytia hemisphaerica|type=transcript|length=1466bp
AATTCACGTCAATGACCTATCACTGACCATTcgtaaaaaaactttaaaca
taTAGCAAGACTATAAAGAGAGAGGGCTATCCCTATATTTATATTTGGCG
ATCCCCATCAAAAATGGGAAAATACAACTTGATCTTCATATTAGTTGTTT
TGGCTGTGCATGCTTCCTGCATCTATGCACGGGAGTCCTACAGCTTATAT
CTTCGATTAGAGAAAGAAAATTACGCCGTTAAAAATGGTTCCAACTTACC
ATCTACAGAATTTGTTATCGAAGGCTCAGAAATGGAATGTTGGTTCAAAT
GTCAACTCGATTATTTGAGATGCTTCACTCTTGAAATTCTGAAGTTGGGT
TTAACAAGCTGGTTGTGTCGATTTTACAATGTCGATTTCATGAAATTGAG
TTATGAATCAAAAGAGTTGTCAATGGTTTATTCTTCTACTGCACGAAGTT
GTTTAGAATTGTTGGAAAGAGGCTTCACATTGGATGGTGTGTATAAAATA
CTGACCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTGGAAGAGG
GTGGACAACGATTCAACGCCGATTAAACGGTGACATTGATTTCAATCGAG
GTTGGCAATCACACAAAGAAGGGTTTGGCGATGTTAATGGTGATTTATGG
ATTGGTTTGGAAACCATTCGAGAAATGAGTGCGTTGTTGAACAACACTTT
GATTCGAATTCAAGGAGAAAGTTTTAACGGAGATCGAAGATTTATCATTG
CAAAGGGATTCTACATCGAAGACGAACAAAAGAAATACAAATTGCATTCT
GGGACAATGATCAATGATGAATGGAATATCGGACGTGATTGGACATATCA
AGATGGTGAAATGTTCACAACACGAGATGATGATAATGATAAAAAAGGTG
GTGGTAATTGTGCACAAGAATTTGCTTGTGCTTTGTGGTATAGGAGCTGT
TTCGCAATGAATCCTAACAGAGCACCAgcaaaacaacaagaaacaacATT
TGCAGGCGGTATCAGCTGGCCCGCCTGGTTAGGCGATCACTTCCAATCAT
TGAAAACCATAAATATGGCAATAAAGAAAATGACCTAAACAAAAGGTTCC
TTTTTTAATAACAACAATTTATTTACGAATAATTTGACCGAAATTTAATC
AATGAGCctcatttattcaaaaaaataataatcggACGGTACCGAATAAA
TAGGGGATATGTTTTTTCTCGTTtagagttttctatattttcctcgccta
taTGTAATATTGTACCGGTAAAAGTATGATGTCTGAtttatcgtcaactt
gaaaaatatctacaaaaacattttctcccTCCATTTGTGTCTTTTCTATG
TGTTGCTTTTCTcttcttgtttttttctctctctacTTTGATAAAATCAA
CATCAAcacattcgaaaaaaataatcaaacgaCCGTTGAAAAGGCAAAAA
CATTTCTGATAGGTTG Run BLAST on NCBI transcript from alignment at scaffold_480:33261..35668+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068203 ID=TCONS_00068203|Name=TCONS_00068203|organism=Clytia hemisphaerica|type=transcript|length=2408bp|location=Sequence derived from alignment at scaffold_480:33261..35668+ (Clytia hemisphaerica)
AATTCACGTCAATGACCTATCACTGACCATTcgtaaaaaaactttaaaca
taTAGCAAGACTATAAAGAGAGAGGGCTATCCCTATATTTATATTTGGCG
ATCCCCATCAAAAATGGGAAAATACAACTTGATCTTCATATTAGTTGTTT
TGGCTGTGCATGCTTCCTGCATCTATGCACGGGAGTCCTACAGCTTATAT
CTTCGATTAGAGAAAGAAAATTACGCCGTTAAAAATGGTTCCAACTTACC
ATCTACAGAATTTGTTATCGAAGGCTCAGAAATGGAATGTTGGTTCAAAT
GTCAACTCGATTATTTGAGATGCTTCACTCTTGAAATTCTGAAGTTGGGT
TTAACAAGCTGGTTGTGTCGATTTTACAATGTCGATTTCATGAAATTGAG
TTATGAATCAAAAGAGTTGTCAATGGTTTATTCTTCTACTGCACGAAGTT
GTTTAGAATTGTTGGAAAGAGGCTTCACATTGGATGGTGTGTATAAAATA
CTGACCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTGGTAAATA
AAGTTCTATTCCATTTATCtgacaaatttttgccaaattagCCTAGGCCG
AAATTTAACATTGATCTGAACATTAGATCGCTAAACGTTAATTACACTCG
AAAAGAtgtaaaaaagaagagaaaagagagaaaaagagtGGACAAGCAAA
GGGAGAAACTAAATTTGCTTGATGTAGATGGGgctttaatttcaaaacaa
aggccgAACGAAGTCCAAACCAGGCTCTATCAActcaaagtcatctttta
aaaagaacaaaaacatagCAAAAACAAAAGTAACACACAAAAAGACATAG
ACAAGCTAGACAAGCAAGCCAGATCAATATTCACGCGGTCCAAATTGCGT
CAgaacaaaaacacaaaatttcctAGAAGGAACCTTGCtccttcaaagaa
aaaatgaccgAGGGACTTTTTACTAATACAGCGAGCTTGTGTGTTTTAGG
AAGAGGGTGGACAACGATTCAACGCCGATTAAACGGTGACATTGATTTCA
ATCGAGGTTGGCAATCACACAAAGAAGGGTTTGGCGATGTTAATGGTGAT
TTATGGATTGGTTTGGAAACCATTCGAGAAATGAGTGCGTTGTTGAACAA
CACTTTGATTCGAATTCAAGGAGAAAGTTTTAACGGAGATCGAAGATTTA
TCATTGCAAAGGTAAAATTATACACATATTAACCATTAGCGTAGTAGGTT
TTACAGGAGACTGTTAACGAATATaagagaaaaattcttttcaacaAAGG
TATCAAAAAGAAGAATTGTATAGGAGCACACTCTTGTGAAAGGGAAATAC
CTCATATGAAAAAGAGTTTTTTCGGGAATTTgcttggtttgtttttttgt
aaggCAGCCTTAAAATACTGTGCACTGAGAAGAGACTTTCCGCGTAAATT
CATCACCAGTCCCCTCAAAAGTCAACAGCGCCGTTAAGAGTTGAACAGTG
CATACGGTATAATATTTGAAGTTTTTGCTTTAGGTTATTATGAGTAGAAT
ACTTACTTACatcaagcaaaaaatgtcaGTTTATCAAACTTCAGAGTGTT
AAATTTTTTTCGAGACACATTCCTTTGAAACTTTTTGTAACCGGGAGCCT
AATTAACTTCAAACGAATTATACCATCTTTTCCCGTTTAATGAATAGGGA
TTCTACATCGAAGACGAACAAAAGAAATACAAATTGCATTCTGGGACAAT
GATCAATGATGAATGGAATATCGGACGTGATTGGACATATCAAGATGGTG
AAATGTTCACAACACGAGATGATGATAATGATAAAAAAGGTGGTGGTAAT
TGTGCACAAGAATTTGCTTGTGCTTTGTGGTATAGGAGCTGTTTCGCAAT
GAATCCTAACAGAGCACCAgcaaaacaacaagaaacaacATTTGCAGGCG
GTATCAGCTGGCCCGCCTGGTTAGGCGATCACTTCCAATCATTGAAAACC
ATAAATATGGCAATAAAGAAAATGACCTAAACAAAAGGTTCCTTTTTTAA
TAACAACAATTTATTTACGAATAATTTGACCGAAATTTAATCAATGAGCc
tcatttattcaaaaaaataataatcggACGGTACCGAATAAATAGGGGAT
ATGTTTTTTCTCGTTtagagttttctatattttcctcgcctataTGTAAT
ATTGTACCGGTAAAAGTATGATGTCTGAtttatcgtcaacttgaaaaata
tctacaaaaacattttctcccTCCATTTGTGTCTTTTCTATGTGTTGCTT
TTCTcttcttgtttttttctctctctacTTTGATAAAATCAACATCAAca
cattcgaaaaaaataatcaaacgaCCGTTGAAAAGGCAAAAACATTTCTG
ATAGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068203-exon-scaffold_480-1491911889:33261..33803 | TCONS_00068203-exon-scaffold_480-1491911889:33261..33803 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1510915933:33261..33803 | TCONS_00068203-exon-scaffold_480-1510915933:33261..33803 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1575043694:33261..33803 | TCONS_00068203-exon-scaffold_480-1575043694:33261..33803 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1491911889:34260..34471 | TCONS_00068203-exon-scaffold_480-1491911889:34260..34471 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1510915933:34260..34471 | TCONS_00068203-exon-scaffold_480-1510915933:34260..34471 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1575043694:34260..34471 | TCONS_00068203-exon-scaffold_480-1575043694:34260..34471 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1491911889:34958..35668 | TCONS_00068203-exon-scaffold_480-1491911889:34958..35668 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1510915933:34958..35668 | TCONS_00068203-exon-scaffold_480-1510915933:34958..35668 | Clytia hemisphaerica | exon |
| TCONS_00068203-exon-scaffold_480-1575043694:34958..35668 | TCONS_00068203-exon-scaffold_480-1575043694:34958..35668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:33261..35668 + |
Blast
BLAST of TCONS_00068203 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.214e-26 Identity = 75/223 (33.63%), Postives = 115/223 (51.57%), Query Frame = 3
Query: 420 SMVYSSTARSCLELLERGFTLDGVYKI-LTVGEEKEVYCDMT--GRGWTTIQRRLNGDIDFNRGWQSHKEGFGDVNGDLWIGLETIREMSALLNNTLIRIQGESFNGDRRFIIAKGFYIEDEQKKYKLHSGTMINDEWNIGRDWTYQDGEMFTTRXXXXXXXXXXXCAQEFACALWYRSCFAMNPNRAPAKQQETTFAGGISWPAWLGDHFQSLKTINMAIKK 1079
S ++ R+C +LL+RG+ L G + I L V CDM G GWT QRR++G +DF R W ++K+GFG G+ W+G + I ++A ++ L R+ F G+ +F K F + DE +KYKL G + + G T + F+T+ D ++ NCA++F A WY C A N N ++A GI+W A G + S K M ++
Sbjct: 108 SQSCATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSEL-RVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGG--SAGNSLTGHNNNFFSTK-DQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKY-SYKVSEMKVRP 325
The following BLAST results are available for this feature:
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