TCONS_00068128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068128
Unique NameTCONS_00068128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068128 ID=TCONS_00068128|Name=TCONS_00068128|organism=Clytia hemisphaerica|type=transcript|length=329bp
ttttaaggggaaaatgaagaaaaataaaaaaattcatgtaaaaGTAGAAT
AGTATGGTTTTCCATCACTTCACAAGCATGGTTGGTGTGATTGAAGAACA
AACGACACGTGATAAGGATGTTGATGGACGCCATAGCCATTTGAAAGCCG
AGAAGAAATTTCTTTCCAATCTTGATAAACATATCAATAAAAACATGGAA
GAGGATACCATTAATCCCACAGAGAAAATAGagaaCTTGAACCGAATCAC
TGGTTTTGGGATCGGTGTGGGAAGtttatATTTACAAGAAGCACTTGGTT
ATCCATTTCTTGTTCTCCAAAGACAATGT
Run BLAST on NCBI

transcript from alignment at scaffold_48:302625..303504+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068128 ID=TCONS_00068128|Name=TCONS_00068128|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at scaffold_48:302625..303504+ (Clytia hemisphaerica)
ttttaaggggaaaatgaagaaaaataaaaaaattcatgtaaaaGTAGAAT
AGTATGGTTTTCCATCACTTCACAAGCATGGTTGGTGTGATTGAAGAACA
AACGACACGTGATAAGGATGTTGATGGACGCCATAGCCATTTGAAAGCCG
AGAAGAAATTTCTTTCCAATCTTGATAAACATATCAATAAAAACATGGAA
GAGGATACCATTAATCCCACNCGAAAAGAAATTCCTTTCCAATCTTGATA
AACATATCAATAAAAACATGGAAGAGGATACCATTAATCCCACAGAGAAA
ATAGGTACTCCCCTCTCCCTGCTATATCATTGCTATTCGTCAGCCAGAAT
TTTGAACGAACTTTTCGTCAGTCAAACAAAACTCAAATACGCCAGAACGT
TAGTTATTATAAAGCTGAATGCCATCTTTAACAACGTGATGTTAAAAATC
CTAtactttctaaatttttattttagagaaCTTGAACCGAATCACTGGTT
TTGGGATCGGTGTGGGAAGGTAGGAATGttaaattcttgagaaaaactgT
AAATTGTACCGATATAAGAATAAAGCTTTGGAGTTTGACATGACTTTTTT
TGTCAACTTATATTGACTCTCAGAATAAAATTACTTTGACACCTTATaat
ctttgacaaattttgttcaaaaagaacaaaaagatcAAAAGGTGCTACAG
AAATTCCCTTCCTCCCTCCTTAtgctgaaccgcccctaaagaCCTAGTAA
CACGGCCAAGTGCGTAAGCTAACGAATATTTAAAATGCAACTCAACTAAA
TCTCactcacttttttttatttcagtttatATTTACAAGAAGCACTTGGT
TATCCATTTCTTGTTCTCCAAAGACAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042527XLOC_042527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068128-exon-scaffold_48-1491911889:302625..302804TCONS_00068128-exon-scaffold_48-1491911889:302625..302804Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1510915933:302625..302804TCONS_00068128-exon-scaffold_48-1510915933:302625..302804Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1575043694:302625..302804TCONS_00068128-exon-scaffold_48-1575043694:302625..302804Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1491911889:302878..302928TCONS_00068128-exon-scaffold_48-1491911889:302878..302928Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1510915933:302878..302928TCONS_00068128-exon-scaffold_48-1510915933:302878..302928Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1575043694:302878..302928TCONS_00068128-exon-scaffold_48-1575043694:302878..302928Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1491911889:303101..303143TCONS_00068128-exon-scaffold_48-1491911889:303101..303143Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1510915933:303101..303143TCONS_00068128-exon-scaffold_48-1510915933:303101..303143Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1575043694:303101..303143TCONS_00068128-exon-scaffold_48-1575043694:303101..303143Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1491911889:303450..303504TCONS_00068128-exon-scaffold_48-1491911889:303450..303504Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1510915933:303450..303504TCONS_00068128-exon-scaffold_48-1510915933:303450..303504Clytia hemisphaericaexon
TCONS_00068128-exon-scaffold_48-1575043694:303450..303504TCONS_00068128-exon-scaffold_48-1575043694:303450..303504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:302625..303504 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.7614	53.851	43.1596	50.2799	22.8086	15.9469	31.1347	22.8919	34.1173	24.292	29.9353	32.2658	21.9112	28.5063	25.9035	25.365	28.2528	37.5642	15.8498	14.9462	26.0455	22.1017	31.5097	36.4946	23.8607	26.0612	21.7122	25.4392	33.8413	32.1597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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