TCONS_00067935 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067935
Unique Name	TCONS_00067935
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2957

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_477:476389..485823-

transcript sequence

>TCONS_00067935 ID=TCONS_00067935|Name=TCONS_00067935|organism=Clytia hemisphaerica|type=transcript|length=2957bp
ttttcagaTTGTCTACAAGAAAAGTGCTAAAGAACTGAACACCCATACAT
GATGGGTGCTATCAAAAAAATAGCGATTCTATTAATCGCATGTCAAGTGA
TACATCTATCACAACAAAACCAGGGCGGACTTCCTGGAAGGCGTTCACGG
CCACGATTTCCCGCTTCCTTTTCAAGAAGGCAGAATCCATTCTCAAGCCA
ACGATTTTCAGTCAATCCAAGAGCTAATCCACAAACAAGGAATTTCTTCA
GACCCATATCACAAGGAGGAAGTCGAGCTCTCCCAAGGAGGCTATCAAAT
GGAACCGTTGTTTTCCCCAGGGTACCAAGCAGGAAACCAGTTTTCCCACA
GGGAGTTCAAAATGGACAGCCTCGTTTCCCTCCACAACAGGGACAACGTA
GATTCCCACAAAACATTCAAGGTGGCCAGCCACGATTCACTCCTAACTCC
AAACCCACATATCCTCAACAACAAATTCGCAATGGAGCACCACGATTCTC
ACAACCTTCACAAAACCGAAAACCTGTTTTGCCACAACGCGTCCCGAACG
GACAACACCGTTTCCCGCAACCAAGTCAAAACAGGCGATTCCCGCAACAA
ATACCTAACGGTGGTCCACGATTCCCACAACCCTCGCAAAACAGAAAGCC
TATCTTTCCACAACCTTCACAGAACAGAAAGCCTATCTTTCCTCAACCAT
CACAAAACAGAGGACCTATTTTCCCGCAGCCATCCCAAAACAGAGGACCC
ATTTTCCCGCAACCATCCCAAAACCGAAAACCGATTTACCCACAAGGTAT
CCCGAACGGGCAACCTAAAGTCATTCCAAACCAAGGACAACGTTACCCGT
TCAACCAACAAATAATCCGATTACCGAACGGACAAGTGGTCCCAAAAACC
CTCCCACGAGGCGGTGCACAAGTCGTTTCACCACAATTACCACCTGTCGC
AAGGAACCCACAACTTCCAGGAAGCggacaacaaaacaatttcgGACAAC
AACAAAATGGTGGAGGCTCACAAGGACCACGAAGAACTTTCGGacCTAAC
CAATGTGGAGGTGGATGTTGTCCTGGCTGGCAACGATCACGAAGAAACAC
AATGTGTATTGTTCCAGTTTGCCGAAACCCTTGTGGTGGAGGTGGCTACT
GTTACCGCCCCAATTCTTGTAAATGTTTCGGTGGCCGTAACTTTGGATCT
AGCTGTGGAGGACAACGCCGAGTTTGCCAATGCTTGAACAATGGGCGATG
TAATGGAGCCAGCAACTGTGTCTGTCCAACCGGATTCGCTGGTCTCCGAT
GTGAAAAACCAATCTGTCAGAAAGAATGTTTGAACGGAGGAAAATGCATT
GGAGCAGAGAAATGTTCGTGTGCAAAGGGCTTTATTGGAAACCAATGTGA
ACGAGacaTCCGTGTTGGCGCATGCTTCACAAAGATTGAGAACAAACGTT
GCAAGAACGCATTGACAGGTGTCAAATGCACGCGTGAATCGTGTTGTGCA
ACCATCGGGGCCGGCTGGAACATCCCTTGTCAACGTTGCCCCGAGAAACG
AGAATGCAAACGAGGCTTCTTGAAAAACCCTAAAACAGGTTTATGCGAGG
ATGTCGATGAATGCCGACACATCCCGAATATCTGTTCGCTCGGTACTTGT
GTCAATACCGTTGGAAGCTACAAATGTTTCTGTGGTGCCGACACACGACG
AGTATATGTCGCCGACAAGTTTGCTTGCATTGACGTGAATGAATGCCGAA
ACAAAGGACTTTGTGAATTCGGTAAATGTGTGAATACAGATGGAGACTTT
CATTGCCAATGTAATGAAGGTTATGAACCAACAGCCAATGGAAAACGTTG
CAAAGCTATTGAAAGGTTGGGTCATTGCTACTTGAATGCAAACAATGGAC
AATGCAGTTCGCAAGCAGCTGGTGTGACCACAATGGATAAATGTTGTTGT
GCAAGTGAAGCTCATGGTTTCAAGCTACTCAATGGAAATAGTTGCATCAA
ATGCCCAAAAAGATGCTCAGTCAATTACCGTGCATTGGCCTGTCCTGGAG
ACACCGGAAACATCGGGTGCGGTGGAGATGGAAAAGGTGGAATCGGAGAT
GGAAAGAAAGCCAACGTCACAGATGTTGTCGAAGGGAAGGGCGGAAATAC
AGGAGGCGGTACTACTGGCGGTGGTACTGATGGCGGTAATGGTAATACTG
GAGGCGGTAATACGGGCGGTGGTGATGGCGGAAATGGCAAAACCACTGAC
CCAACCGACCCAACTACTGGAAAAGgaTCCAACAAATGTTCTGATAATCC
AAACGCCTGCAAATTTGGCACCTGTGTTGACGTGGGAAACAACTTCCGAT
GCGATTGCAATGCTGGATTTAAGCCGGACACTGCAGTTAACGGAAAGCGC
TGTATCGAAACTGGCAAATTTTCCCAATGTTTTGATCGTGATTCTTGCAC
TGTGCTGGCGAGTGGACGACAAGTTGAACGTCGAAGATGTTGTTGCGAAA
AGCCTCACCGTTCTTTTGGCGATAGTTGTAACGCAAATTGTCCCGTCCGT
GGAACAGAGGAATACAGCAAGATGGGATGTGCCGATGAACCTACAACCGG
AACTGGAACTGGAACCGGCACTGGAACAGGTGGAAGTGGAACCGGTGGAA
GTGGAACCGGTGGAAGCGGAACTGGAACAGGAGGTAGAAAAGGTGTTTGC
GATCAAATCGGAGGACTGTGTCAATTCGGTACATGTGTCAACACCAATGA
TAATATCGGATATACTTGCCAGTGTAATTCGGGCTTTGATCTTGTCAAGG
TTGATAACGGATACCGTTGCCGAGCGATGACAACCAACGGCAAATGTTAC
GCCAAATTCTCTGGTTCATTCTGTTTCGATGAATTCGATGCACCAACGTC
AAAGAGAGATTGCTGTTGTGGAAACCCAGGACGCGCTTTTGGAAACGGAC
AGTGTGA

Run BLAST on NCBI

transcript from alignment at scaffold_477:476389..485823-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067935 ID=TCONS_00067935|Name=TCONS_00067935|organism=Clytia hemisphaerica|type=transcript|length=9435bp|location=Sequence derived from alignment at scaffold_477:476389..485823- (Clytia hemisphaerica)
TTTTCAGATTGTCTACAAGAAAAGTGCTAAAGAACTGAACACCCATACAT
GATGGGTGCTATCAAAAAAATAGCGATTCTATTAATCGCATGTCAAGTGA
TACATCTATCACAACAAAACCAGGGCGGACTTCCTGGAAGGCGTTCACGG
CCACGATTTCCCGCTTCCTTTTCAAGAAGGCAGAATCCATTCTCAAGCCA
ACGATTTTCAGTCAATCCAAGAGCTAATCCACAAACAAGGAATTTCTTCA
GACCCATATCACAAGGAGGAAGTCGAGCTCTCCCAAGGAGGCTATCAAAT
GGAACCGTTGTTTTCCCCAGGGTACCAAGCAGGAAACCAGTTTTCCCACA
GGGAGTTCAAAATGGACAGCCTCGTTTCCCTCCACAACAGGGACAACGTA
GATTCCCACAAAACATTCAAGGTGGCCAGCCACGATTCACTCCTAACTCC
AAACCCACATATCCTCAACAACAAATTCGCAATGGAGCACCACGATTCTC
ACAACCTTCACAAAACCGAAAACCTGTTTTGCCACAACGCGTCCCGAACG
GACAACACCGTTTCCCGCAACCAAGTCAAAACAGGCGATTCCCGCAACAA
ATACCTAACGGTGGTCCACGATTCCCACAACCCTCGCAAAACAGAAAGCC
TATCTTTCCACAACCTTCACAGAACAGAAAGCCTATCTTTCCTCAACCAT
CACAAAACAGAGGACCTATTTTCCCGCAGCCATCCCAAAACAGAGGACCC
ATTTTCCCGCAACCATCCCAAAACCGAAAACCGATTTACCCACAAGGTAT
CCCGAACGGGCAACCTAAAGTCATTCCAAACCAAGGACAACGTTACCCGT
TCAACCAACAAATAATCCGATTACCGAACGGACAAGTGGTCCCAAAAACC
CTCCCACGAGGCGGTGCACAAGTCGTTTCACCACAATTACCACCTGTCGC
AAGGAACCCACAACTTCCAGGAAGCGGACAACAAAACAATTTCGGACAAC
AACAAAATGGTGGAGGCTCACAAGGACCACGAAGAACTTTCGGGTAAGTT
TTTTCAGTTGACTCTCGAATTCGATCTTCATTGGACAATTCTATTTGAAT
TACAGAAAGATTTGAATTACAGAAAGTAATTTGAACCATTTTCCAGCTGA
GGGGACCAGTATTTTATCTCGAATTACAGAAATATTCTAAAAACAGAGAT
TCGAATTAGAGAGAGTTACATTTTATTTTCAAAGTCATGTATAACCTAAT
AACGGAGATTTGCTATCTAGTTACTGCTATTAATTGTTAAGTCAAATCTT
TTGAGCTGAACACCATAAGATAAGACAAGAATTCATTTCATTGGCTGACG
ATAATGACGTTCTTTTGATGACGCTTTTTCCATTTTTTGGTTGATCTTTT
GTTTTTCTTCATTTCTGATTGGCTAATTTCCCAAATACATTATTCTGATT
GGTTTAGACCTAACCAATGTGGAGGTGGATGTTGTCCTGGCTGGCAACGA
TCACGAAGAAACACAATGTGTATTGTTCCAGTTTGCCGAAACCCTTGTGG
TGGAGGTGGCTACTGTTACCGCCCCAATTCTTGTAAATGTTTCGGTGGCC
GTAACTTTGGATCTAGCTGTGGAGGTAAGCAATGTTTTCCTAATAATTTT
TCTAAGATAACGCTAAAACCTTTCAAGATTTTTTTCTGAACAATATCAAG
TATGGTTCCTACTGACTTGCTTGACTGCCTTTTGAAGGCAATGTGGCAAC
TTCAAAAGCTTTTAATTTTGTTAACCATCATTTTGTTAACAATTCTTCAC
ATCAGATTCACAACATCCTCTTTGAAAAAATAACATACCGAAGTCAATCT
GTCTCTTAGATCTCCGTTTGTTTTCCCTCTAAATCTTTAATTTTCTTATT
TGAAGGACAACGCCGAGTTTGCCAATGCTTGAACAATGGGCGATGTAATG
GAGCCAGCAACTGTGTCTGTCCAACCGGATTCGCTGGTCTCCGATGTGAA
AAACGTAAGAACCCTTTACCATGAAGCTTTTCGAGATTTTGGCTTTCCCT
AAGTCTTCACTTTGAGATTTCTGTAATTTATCAAGCTTTCGTCAAAAATC
GAGTTCAGATACCACATTTTTTACAGTTCCACGTTATTTCATTAATAACC
ATTTATCTATGCTCGAATCTTAGAAAAATCAAAGCATTAAAACTCAAAAT
ACAAAACGGTTTAACTAATTAAACAATGGCTCTGAAATCTTGGGCTAACA
GTTTGGGTCTATTATCAGTATAGTATTGTCTTTGTACCTCTAAAATTCAT
TTAATAATATTTCTGATACTTCATGTGTTTTTTCCATTGTAGCAATCTGT
CAGAAAGAATGTTTGAACGGAGGAAAATGCATTGGAGCAGAGAAATGTTC
GTGTGCAAAGGGCTTTATTGGAAACCAATGTGAACGAGGTATAGTGGATC
AATTGTCTACCAGTTTTCTTACTTTCATTGAGGCCTTAAACAATGTAAAA
TTTTCTTCCGTTGCAGACATGATTTCCGCCTCATTGAAGTATTTAAAAAG
GCTTTTCCGTCTCAAAATTCTGCTAATTCACCAAAATTTCAAGAATTTGT
TCTAATTTTCTGTGAAAATCCATTTTCCGTCTCAAACAAATAACCTTGCT
TTTACCACTGCTTAGAATCGCATCTTTCTGGAAACTCTGAAAATTAATTT
TATAGTGTGGTTAATACGATTGGTGACTATCAAAAAATTTCACACTTCCT
AGTCATACCAGTCGGCAGTTGATCCCATTTGATAAAGCTTTGAAAACTTT
GAAACTCTCGTTTAAAACACTGAATCACGTTTTCTTTTTCAAGACATCCG
TGTTGGCGCATGCTTCACAAAGATTGAGAACAAACGTTGCAAGAACGCAT
TGACAGGTGTCAAATGCACGCGTGAATCGTGTTGTGCAACCATCGGGGCC
GGCTGGAACATCCCTTGTCAACGTTGCCCCGAGAAACGAGAATGCAAACG
AGGCTTCTTGAAAAACCCTAAAACAGGTAAGGTTCTTATTTTACATTTCA
AAACTCTACGATAAGTTGAATCCCACTCGATAAATAGTTAATTTTTTAGG
CTGCTGGATCAGCTCTGTTTTATATTTTCATGAAATCTGATTTAAAAAAT
GAAAAACGAACTCACAGCAAAATTCGGTGCTGGGTAAGATGGGTCACATT
GATTCGTCGTTTTTATTTCCCAACTTTATGAGTGATTTTTTTCCTTCATC
TCTGTTTCGGACAGACTTGCCATTCACATACTGTGAGACGTAGTCCACTA
TGTCTGGACGTGGCTCATTTGATTTATGAGACTGTAAAAGATCAACAGAA
ATCTAGCAAACTGAAACTTTTTCTTAGCAATGAAAAAAGGCATTGCAATA
GACCTTATCGGAGTTTTTTAATTTTTCTAAAGTAAAACAGTGATGCATTG
TGGGATTGTTTTGGAGTTATTACAATAGAAATCTCTCGGAAATTCCTCGA
TGGAATTCTATTGTAATATCCCCGAAACAATCCCACAATACATCGCTTTT
TTAGAGAAAGTCAAAAACTCCGATAAGATCTAGGGATAGCTCCCTGTGCG
CCGGCTTTGTTAAGAAAACCAACTGTTTATAAAAAACATACTTTTAATCA
TCAGGTTTATGCGAGGATGTCGATGAATGCCGACACATCCCGAATATCTG
TTCGCTCGGTACTTGTGTCAATACCGTTGGAAGCTACAAATGTTTCTGTG
GTGCCGACACACGACGAGTATATGTCGCCGACAAGTTTGCTTGCATTGGT
AAGAAGATATTCTTTTAATCTAAAATTATTTTTAAGTCCGCTAAGTAAAG
AGGATATTCTTTCAATTTGAAATTATTATTATTATCACGTCCGCTGCCAC
AAAATGAGCATTGTAGTTCTTCATAATTCGTATCATTTTACAAACAACTA
ACTTTCATAAACCCTGGACTGAGCCATATCCGCCACCTTTGCGATCGGAG
TTTATTTTTAAAGTGGTACCCGCAAAAAAAGTTATTGCAGTGCTGCTACC
ATTAGGGTACCGCTTTCAAAAAATCTCCAATCAAATATTTTGCTTGGCCA
GTGTCTCCAAAGCTTAGTGCTGTGAACACGGTGATTTCAACTATGAGGCT
CGGGAATCCCTCATCATTTTTCAACCAATATGCAAGACTCAACTCTATTG
GTGATTTTATCTCTTATAAAGTATTGCAACTTTTAGACGGAAATTCGTCT
AATTGAGTTTTCAAACCGAACCCCTGGCGATATCACTCTGTGCCTTGCGG
GGAAGGATCTATTTGTTTTTCTGTGTTCGTTTTGGTTAGTAGTATACGTT
CGTAATGTAATGTACTTTCTCAAATTATAAAAAAAATTTTGTCGTCCCAA
TAACATGCCTTGAAACTAGACATTTCGTAAAATTCATATCAACTACCAGG
CATTCCCTCAAGATTAACCAAAGCTAGTTGCAACACTGCGTATATCCAGG
GAGATGTAGAAAATATCATTTATGATTCCCTTTATTTTCTTAGACGTGAA
TGAATGCCGAAACAAAGGACTTTGTGAATTCGGTAAATGTGTGAATACAG
ATGGAGACTTTCATTGCCAATGTAATGAAGGTTATGAACCAACAGCCAAT
GGAAAACGTTGCAAAGGTAGGGAGTACTTTATTGACCTTGGTTCGTTTTT
AAATACAGTTGACTCTCTCTAATTCGACCTTCAAAGGACAAAAATTTTTC
TTCGAATTAGAGAAAGATTTGAATTACAAAGAGTAATTTGAACCATTTTT
TAGCTGAGGGGACCAACATTTTAGTTCGAATTACAGAAATATTTAATGAC
AGAGGTTCGAATTAATGAGAGTTGGCTGTATTCGCATATAGCTTGAAGTG
TAGATTTTTAAAAGCTCGGATCTGTTTTCTGAAGATCTCTCTCCTGAAAG
TCTTATTTGGTTTCAGCAAACTGTAAAAAAAACAGCAATCCCATTTTGTG
ATTTTTTTCCTATTATCTCATATTTGAGGAGACATTAGCCTTTGACTGTA
AAAGGTTCGTTGTTTAGAGTCTCAGCTCTCTAATTATCCATGATGACGAT
AGTCCGTATCATTAAGAACAGAAGTGTGTTCGTAACCTTAGCTAAAACTA
ATATATTGACTTTCTACACAGCTATTGAAAGGTTGGGTCATTGCTACTTG
AATGCAAACAATGGACAATGCAGTTCGCAAGCAGCTGGTGTGACCACAAT
GGATAAATGTTGTTGTGCAAGTGAAGCTCATGGTTTCAAGCTACTCAATG
GAAATAGTTGCATCAAATGCCCAAAAAGATGCTCAGGTATAGTGGATGTT
TACAATACAACAGTTGTGTTTTTCTTCTCGTTTGTTAGCTTCAGACTGCA
AAATTATTACTAAACGTAAAACTTGTTTCCGAATTAGAATGTCCCTATTA
GAAAGTGGCTTTGCGGTAGAATTCGTTTTTTCAACAACATTCATTTCTGT
TTCGTCTTCTTTTCTTTTTGCTAAAAAAAGCATATCTTTAGACATTTTGT
TTATCTTAGAAATAATTAATACCTTTTCTCGACTATAATTGGTTGGCCAC
ATAGGATAAACAAGAACTAGTCTAAAAACTGTAATACGAATCATTTTCTC
TCTACAGTCAATTACCGTGCATTGGCCTGTCCTGGAGACACCGGAAACAT
CGGGTGCGGTGGAGATGGAAAAGGTGGAATCGGAGATGGAAAGAAAGCCA
ACGTCACAGATGTTGTCGAAGGGAAGGGCGGAAATACAGGAGGCGGTACT
ACTGGCGGTGGTACTGATGGCGGTAATGGTAATACTGGAGGCGGTAATAC
GGGCGGTGGTGATGGCGGAAATGGCAAAACCACTGACCCAACCGACCCAA
CTACTGGAAAAGGTTAGATTCTCAATACGTGCAATTTCATAAAACTTCCA
AAAAAACTTTTGATAAAATATAAATACAATGTTGCCTTTGGCTAAGTATA
AAGTCCCGACTGTCATTTTTGAAACTTTTAGANCGTTGCCTTTGGCTAAG
TATAAAAGTCCCGACTGTCATTTTTGAAACTTTTAGGCTCAATTCAATAT
TCTTAACTTTTAAGCTGTTCTTCAAAATCTTCGCTTCATAAAGAATGACC
TGCTCATCTTCTGAAACTTGAGATAGTTAGATTGTTTTTAGATCTTCGTT
TTCTAAACTTTTCTTAAATAGTGGTCGAGAGAAAGCTTTAGAATTCCGGC
GTGTTGGGGAGAAAAAAATCTGTTTCCAGGCTGCATCACACATTTTACAG
ATTTCTTGAAACTTTTCATTTTGTTTTTTTCAGGATCCAACAAATGTTCT
GATAATCCAAACGCCTGCAAATTTGGCACCTGTGTTGACGTGGGAAACAA
CTTCCGATGCGATTGCAATGCTGGATTTAAGCCGGACACTGCAGTTAACG
GAAAGCGCTGTATCGGTTAGTCACAATTCTCTTTACTGATTTTTCATGAT
TTGGGGAAGGAATTTAGGGTTTTGCAGTTGTTTTTTCAAGTGTACTTTGA
ACAAATGTGATGTTGTGTTAGAGGCGTTACTCTCTTGTGAGAGTCTTTGT
CTATCGCTTATCTATGTGTAGAATAGTGTGTCTGAGCTTCTGTATCCAGC
TTACTAAACTATCTAAAAACAAGAATTGTAAGTTTGAGTTGTCTAGGTGT
ACTCGCTTAAAGCTTTTTTCTTGTTTAATAGTTTAAGTTACATCTATTAC
TAGTTATTCCTCAACCATAATTCTTCCAAAATTCAACCAAAATGTTAAAC
CTTCTTTCTTTTAGAAACTGGCAAATTTTCCCAATGTTTTGATCGTGATT
CTTGCACTGTGCTGGCGAGTGGACGACAAGTTGAACGTCGAAGATGTTGT
TGCGAAAAGCCTCACCGTTCTTTTGGCGATAGTTGTAACGCAAATTGTCC
CGTCCGTGGAACAGGTAAATTGAGTACTGCCCGTAGATTCAAATTTTTTT
TCGCTTAAAGATAACGCAAAGTTCAATATACAGTAGANGCTGCCCGTAGA
TCCAAATTTGTTTTCGCTTAAAGATAACGCAAAGTTCAATATACAGTAGA
GTCTCCATAACTCGAATCCGCACGGGGAGCACAAATTTGTTTGAGTTAAG
GAGATTTCGACTTATGGAATAAGGTTTATAAGGCATTTTTAACCAAGGGC
CCACAAAACTTGTTTGAGTTTAGGAGACATTCGAGTTATAGAGGTTCGAA
GAGTTAAAGGACCCCCTGTACATATAATGAATTTTCTGTGAACGGGATGG
AACAGGCTTCGTAAAGCCGTGTACTTGTAATATCAACAGTTTGTTTAGAT
AGTCTTCTTTTTTTCCTTAACATAAACCATGCTAATCTTTTTGCCGACAT
TTATTTTAGTAAACAAAGCTTTCGTTTAAAGACAATAAAGTGCCCGAATC
GACAAATTTACACTCAAGATCTATACCGAATCTTTTGATAAGGGGTTACT
GTCATGAAAAGCTTTTTAATTTAATTTGGAATGCCAATTGTTCATGTCTT
GTATTCTGTTTTTGTAGAGGAATACAGCAAGATGGGATGTGCCGATGAAC
CTACAACCGGAACTGGAACTGGAACCGGCACTGGAACAGGTGGAAGTGGA
ACCGGTGGAAGTGGAACCGGTGGAAGCGGAACTGGAACAGGAGGTAGAAA
AGGTAGATATTGAGTTTCAAAATGGTATTAGATCTTTTTTCTTGCGTGTG
GCTTGTTTGGTTTATCGTTTGAAATAAAACCTGTTACCCAATAATCTCCG
AGCAGATTCTGATATTCCGCGCAAAACACGTATTCAATCTAAAGGTCATG
GCTCCGTTAGGAGAATTAGCTAAATTGAACTTTTTCAACGACACTTAGGA
TGAATATTAAATGAGCTTTTGAGCGCGATTATTAGCTAAAACAAAACAAT
CGCACCAAAATCACGCGCCAATTAAAAGCATAAACATTAGAACCCAGTCG
CTTTAGCTTTCGTTTTCAAGCGCGGTTTTGAATGTTTTGGTCATTGAAGT
ATAATCCCGAAGGGCTAGAATTGAATTTCCTTGGTAGGATATGAAGCCGA
CAAATCCTACCAAAGTTGCGCGGCCTTGAGCGACCCGCCTGGTTTTTACA
TAAATGGCAGATTGAAATAAAAATTTACCGCTTAATTGCGAAAAATATAT
CACTCGAAAACAAAGGAATTGCTAGATTCAATCCGTCATCAAAAATAAAG
CGTATATTTTAAGGCTTCACTTTCTCTTGCCTGAGAAAGGTTAGAGATTC
GATTCTAGCCCTTCGGGCTTATACTTCATTGGTTTTGGTTGAACCACAAG
GTCGGATTGTCACATTCGCCATACCCCTTTAGAGCAGAGCTTGGTATGCG
CATAATGGACGATCTGTTTTGAGATTAGCTACACAACGTTGGGCTATTTG
AAGTCGCGAATAAGATTTAGTTACAATCTTTGAAATAAATCATTTTAATT
ACTATAACATTTGCAAAACTAAATGTTACACGGGCTTTAATCTTAGTGAC
ATGGACGCTTATCGAAAATATGGTGTTGACTGCGGTCGAACAAAAATGAT
AATATTTGGATCAGAGATTTTCGTGAATTACACTGGAAATTTGACAACTT
TAATTTCTTGGAATTTAGTGTGACTGATATTGTGTTTTCTTCCTGTACAG
GTGTTTGCGATCAAATCGGAGGACTGTGTCAATTCGGTACATGTGTCAAC
ACCAATGATAATATCGGATATACTTGCCAGTGTAATTCGGGCTTTGATCT
TGTCAAGGTTGATAACGGATACCGTTGCCGAGGTAAGGCTTTTCTTACAC
TGAAAATGCTCTTCTCGAAATGTATAAAATGATTGCGATCCTCGTTTTCA
ATATCGTTGCCTTGCAAGCGGTTGCGGTCTTGTATCAAAATTGAAAACGG
TCTTTTGGGAAAAAATATTACATGTTTAAATGTCATTTTAAATAATTATT
TCATTTGAAAACGAGGCCTGCAATGTTATTGATTTATCTCGAGAAGAGTG
TATTTTTCGTTTGATATTTCATTTGTTAGAAATTCCGGACCTGAGATGTT
TTATACCCTTCTCCATCTTGTTTTGAGCAATTCAAACTAAAATGGACTTT
TGGAGAGGAAAGGTTTCCTGTGAAGCATTAAAAAAGATAACTAAATTACA
TTCCTGCAACTCTTATATGAACGTTTTTTCTCTGGAAAAGCCCAATAAAG
TATATATACCCTATAAAGTGATAATAAAAACTTTGCATTTCATAATTTTC
AGCGATGACAACCAACGGCAAATGTTACGCCAAATTCTCTGGTTCATTCT
GTTTCGATGAATTCGATGCACCAACGTCAAAGAGAGATTGCTGTTGTGGA
AACCCAGGACGCGCTTTTGGAAACGGACAGTGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042418	XLOC_042418	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_477	supercontig	scaffold_477:476389..485823 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.000117223	9.34742e-08	0	0	0	0

Blast

[Close]

BLAST of TCONS_00067935 vs. Swiss-Prot (Human)
Match: FBN2 (Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 2.016e-63
Identity = 141/328 (42.99%), Postives = 190/328 (57.93%), Query Frame = 1

Query: 1072 PGWQRSRRNTMCIVPVCRNPCGGGGYCYRPNSCKCFGGRNFGSSCGG---QRRVCQCLNNGRCNGASNCVCPTGFAGLRCEKPICQKECLNGGKCIGAEKCSCAKGFIGNQCERDIRVGACFTKIENKRCKNALTGVKCTRESCCATIGAGWNIPCQRCPEK-RECKRGFLKNPKTGLCEDVDECRHIPNICSLGTCVNTVGSYKCFCGADTRRVYVADKFACIDVNECRNK-GLCEFGKCVNTDGDFHCQCNEGYEPTANGKRCKAIERLGHCYLNANNGQCSSQAAGVTTMDKCCCA-SEAHGFKLLNGNSCIKCPKRCSVNYRAL 2037
            PGW+       CIVP+CRN CG G +C RPN C C  G+   S+CG    Q+   +C+N G C    +C C  G+ G  C +P+C+  C NGG+CIG  +C+C  GF G QCERD R G CFT++ N+ C+  LTG+ CT+  CCATIG  W  PC+ CP + + C+RGF+ N +TG C+DVDEC+ IP IC  G C+NTVGS++C C A  ++     K  C D++EC    G+CE G+C NT G + C C  GY  + +G RC   +R G C+    NG+C+ +  G  T  +CCC      G   +       CP R S  YR L
Sbjct:   99 PGWKTLPGGNQCIVPICRNSCGDG-FCSRPNMCTCSSGQ-ISSTCGSKSIQQCSVRCMNGGTC-ADDHCQCQKGYIGTYCGQPVCENGCQNGGRCIGPNRCACVYGFTGPQCERDYRTGPCFTQVNNQMCQGQLTGIVCTKTLCCATIGRAWGHPCEMCPAQPQPCRRGFIPNIRTGACQDVDECQAIPGICQGGNCINTVGSFECRCPAGHKQSETTQK--CEDIDECSIIPGICETGECSNTVGSYFCVCPRGYVTSTDGSRCID-QRTGMCFSGLVNGRCAQELPGRMTKMQCCCEPGRCWGIGTIPE----ACPVRGSEEYRRL 416

HSP 2 Score: 95.9005 bits (237), Expect = 8.580e-20
Identity = 87/271 (32.10%), Postives = 122/271 (45.02%), Query Frame = 1

Query: 1243 GRCN---GASNCVCPTGFAGLR----------CEKPICQKECLNGGKCI---GAEKCSCAKGF----IGNQCERDIRVGACFTKI----ENKRCKNALTGVKCTRESCCATIGAGWNIPCQRCPEKRECK--------RGFLKNPKTGLCEDVDECRHIPNICSLGTCVNTVGSYKCFCGADTRRVYVA-DKFACIDVNEC-RNKGLCEFGKCVNTDGDFHCQCNEGYEPTANGKRCKAIERLGHCYLNANNGQCSSQAAGVTTMDKCCCA 1953
            G CN   G  +C+C  G+   R          C  PI    C+NG  C+   G  +C+C   F     G  C  D RVG C+ K     +     N   GV  +R SCC ++G  W  PC+ CP     +         GF  NP T + ED+DEC+ +P +C  G C+NT GS++C C    +  Y++ D   C D++EC  + G+C  G C NT G++ C C   Y     G  C  + R   CY + N   C ++     T   CCC 
Sbjct: 1504 GTCNNLPGMFHCICDDGYELDRTGGNCTDIDECADPI---NCVNG-LCVNTPGRYECNCPPDFQLNPTGVGC-VDNRVGNCYLKFGPRGDGSLSCNTEIGVGVSRSSCCCSLGKAWGNPCETCPPVNSTEYYTLCPGGEGFRPNPITIILEDIDECQELPGLCQGGNCINTFGSFQCEC---PQGYYLSEDTRICEDIDECFAHPGVCGPGTCYNTLGNYTCICPPEYMQVNGGHNCMDM-RKSFCYRSYNGTTCENELPFNVTKRMCCCT 1765

HSP 3 Score: 92.4337 bits (228), Expect = 9.271e-19
Identity = 84/283 (29.68%), Postives = 114/283 (40.28%), Query Frame = 1

Query: 1237 NNGRCN---GASNCVCPTGFAGLRCEKPICQKE-------CLNGG--KCIGAEKCSCAKGF----IGNQCERDIRVGACFTKIENKRCKNALTGVKCTRESCCATIGAGWNIPCQRCPEKRECKRGFLKNPKTGLCEDVDECRHIPNICSLGTCVNTVGSYKCFCGADTRRVYVADKFACIDVNECRNKGLCEFGKCVNTDGDFHCQCNEGYEPTANGKRCKAIERLGHCYLNANNGQCSSQAAGVTTMDKCCCASEAHGFKLLNGNSCIKCPKRCSVNYRAL 2037
            +NG C    G+ +C CP G+   R E   C+         C+NG     +G+  C C+ G      G  C   ++ G C+  I++ RC+  + G    +  CCAT+GA W  PC+RC     C RG L   K   CEDV+EC   P +C  G CVN+ GS+                                           HC+C EG      G+ C  I R+  CYL  +  +C     G   MD CCCA  A       G  C +CPK  +  Y  L
Sbjct:  822 DNGLCRNTPGSYSCTCPPGYV-FRTETETCEDINECESNPCVNGACRNNLGSFNCECSPGSKLSSTGLICIDSLK-GTCWLNIQDSRCEVNINGAT-LKSECCATLGAAWGSPCERCELDTACPRG-LARIKGVTCEDVNECEVFPGVCPNGRCVNSKGSF-------------------------------------------HCECPEGLTLDGTGRVCLDI-RMEQCYLKWDEDECIHPVPGKFRMDACCCAVGAAW-----GTECEECPKPGTKEYETL 1051

HSP 4 Score: 88.5817 bits (218), Expect = 1.440e-17
Identity = 84/275 (30.55%), Postives = 114/275 (41.45%), Query Frame = 1

Query: 1255 GASNCVCPTGFAG-----LRCEKPICQKECLNGGKC---IGAEKCSCAKGF---IGNQCERDIRVGACFTKI-ENKRCKNALTGVKCTRESCCATIGAGWNIPCQRCPEKRECKRGFLKNPKTGLCEDVDECRHIPNICSLGTCVNTVGSYKCFCGADTRRVYVADKFACIDVNEC-RNKGLCEFGKCVNTDGDFHCQCNEGYEPTANGKRCKAIERLGHCYLNANNGQCSSQAAGVTTMDKCCCASE-AHGFKLLNGNSCIKCPKRCSVNYRAL 2037
            G+  C+C  GF       +  +   C++     G C   +G+  C C  GF     N C       + F ++  N RC N +   KC                         C  G+   P    C D +EC  +P  CS GTC N  GS++C C       Y      CID+NEC  +  +C FG C NT G F C C  G+  + NG+RC    R   C+ N  NG+CS   A  TT  KCCC+     G+    G+ C  CPK   V ++ L
Sbjct: 1913 GSYQCICHNGFKASQDQTMCMDVDECERHPCGNGTCKNTVGSYNCLCYPGFELTHNNDCLDIDECSSFFGQVCRNGRCFNEIGSFKCL------------------------CNEGYELTPDGKNCIDTNECVALPGSCSPGTCQNLEGSFRCICPPG----YEVKSENCIDINECDEDPNICLFGSCTNTPGGFQCLCPPGFVLSDNGRRCFDT-RQSFCFTNFENGKCSVPKAFNTTKAKCCCSKMPGEGW----GDPCELCPKDDEVAFQDL 2154

HSP 5 Score: 88.1965 bits (217), Expect = 1.841e-17
Identity = 73/212 (34.43%), Postives = 95/212 (44.81%), Query Frame = 1

Query: 1255 GASNCVCPTGFAGLRCEKPICQKECLNG------GKCI---GAEKCSCAKGFIGNQCER---DIRVGACFTKIENKRCKNALTGVKCTRESCCATI-GAGWNIPCQRCPEKRE------CKRGFLKNPKTGLC-EDVDECRHIPNICSLGTCVNTVGSYKCFCGADTRRVYVADKFACIDVNECRNKGLCEFGKCVNTDGDFHCQCNEGYEP 1830
            G+  C+CP G+  ++ E  I   EC         G C    G  +C C  GF+ +   R   D R   CFT  EN +C           + CC+ + G GW  PC+ CP+  E      C  G    P      EDV+EC   P ICS G C+NT GS++C C       Y   +  C+D +EC     C  G C N  G F C CNEG+EP
Sbjct: 2037 GSFRCICPPGYE-VKSENCIDINECDEDPNICLFGSCTNTPGGFQCLCPPGFVLSDNGRRCFDTRQSFCFTNFENGKCSVPKAFNTTKAKCCCSKMPGEGWGDPCELCPKDDEVAFQDLCPYGHGTVPSLHDTREDVNECLESPGICSNGQCINTDGSFRCECPMGYNLDYTGVR--CVDTDECSIGNPCGNGTCTNVIGSFECNCNEGFEP 2245

HSP 6 Score: 85.8853 bits (211), Expect = 8.306e-17
Identity = 63/189 (33.33%), Postives = 98/189 (51.85%), Query Frame = 1

Query: 1348 IGAEKCSCAKGF----IGNQCERDIRVGACFTKIENKRCKNALTGVK-CTRESCCATIGAGWNIPCQRCP------EKRECKRG--FLKNPKTGLCEDVDECRHIPNICSLGTCVNTVGSYKCFCGADTRRVYVAD--KFACIDVNEC-RNKGLCEFGKCVNTDGDFHCQCNEGYEPTANGKRCKAIER 1866
            IG+ +C C +GF     G +C  D R G CF ++    C+ A +     T+  CC   G GW   C+ CP       K+ C  G  +  + +     D+DEC+ +PN+C+ G C+NT+GS++CFC    +  Y  D    +CID++EC ++   C +  C NT+G + C C  GY    +GK CK ++ 
Sbjct: 2358 IGSYRCECNEGFQSSSSGTEC-LDNRQGLCFAEVLQTICQMASSSRNLVTKSECCCDGGRGWGHQCELCPLPGTAQYKKICPHGPGYTTDGR-----DIDECKVMPNLCTNGQCINTMGSFRCFC----KVGYTTDISGTSCIDLDECSQSPKPCNY-ICKNTEGSYQCSCPRGYVLQEDGKTCKDLDE 2535

The following BLAST results are available for this feature:

BLAST of TCONS_00067935 vs. Swiss-Prot (Human)

BLAST of TCONS_00067935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBN2	2.016e-63	42.99	Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3	[more]

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TCONS_00067935 (transcript) - C. hemisphaerica