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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067871 ID=TCONS_00067871|Name=TCONS_00067871|organism=Clytia hemisphaerica|type=transcript|length=865bp
TTTCTCGAGCGCTTCGGAAAACTAGGACTCCAGAGTAACATCTACACCTG
CAGACATTTAAGACGCTTGTAACGGACAGCGTTAGGGATTTTGGAAAGAT
GAAAAACTCTTTTTCCTATTCTCCGAGTATACCTTCTATATCCCACTACA
CTTTACCACACTCTGCAAACTAGAATCCAGTCCCTTAGTACACTTTGTAT
GATTTTGATAACGCTCTCGAAAGAGTCACGATTGTATCAAGTCtatttgg
aaaatcaaaaagtggtgcaaTAGTGGCTCTGGGTGATTGTGTacttaaaa
tatatattttaaacaCTTGCTCTACTttaggtcagatctctgatcttcac
catacatatttttttcttttagacgTTGCAGTGAAAGGCTTGATAGCAGA
AGATATCCGAGTGAAACTCCTTCAAATTGAGAAGCAGTTTCTTGGTCAAG
TCATACAAACATGTCATGGAGATATTGCGTATCATTTCACGCTCAATAAT
CAAAAGGAGGAATTCCAGGAAGGTGAGGTTATTGGATTTTTCGGTCAAGA
CAGCAAGCAAACAGTAGAAaagctgacgtcagcaaattgCAAAGATGTCA
AGCTACAAGGGGTGGTTACTCGATCGCAATACTTTGAAGGGATGAAACCG
CGAAATGCAGATACCTCAACAGAAACAATATGTTTGATGGGTGTGGTTCC
AGTCAAAGTGATTGGTAAAGTTCAACCACGTGATGCTCTTTACTCGTGCC
CAGACCACCCTGGTGTCGCAATCAGCCAATCAGAGTTGAGTAAAGACGAT
ACAGAGAAATCGAAGTATGCTTTTGTCGGAATGGCTTTTGAAGGGAAACC
TTTAAATGATTCTAA Run BLAST on NCBI transcript from alignment at scaffold_477:76422..82248+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067871 ID=TCONS_00067871|Name=TCONS_00067871|organism=Clytia hemisphaerica|type=transcript|length=5827bp|location=Sequence derived from alignment at scaffold_477:76422..82248+ (Clytia hemisphaerica)
TTTCTCGAGCGCTTCGGAAAACTAGGACTCCAGAGTAACATCTACACCTG
CAGACATTTAAGACGCTTGTAACGGACAGCGTTAGGGATTTTGGAAAGAT
GAAAAACTCTTTTTCCTATTCTCCGAGTATACCTTCTATATCCCACTACA
CTTTACCACACTCTGCAAACTAGAATCCAGTCCCTTAGTACACTTTGTAT
GATTTTGATAACGCTCTCGAAAGAGTCACGATTGTATCAAGTCtatttgg
aaaatcaaaaagtggtgcaaTAGTGGCTCTGGGTGATTGTGTacttaaaa
tatatattttaaacaCTTGCTCTACTttaggtcagatctctgatcttcac
catacatatttttttcttttagacgTTGCAGTGAAAGGCTTGATAGCAGA
AGATATCCGAGTGAAACTCCTTCAAATTGAGAAGCAGTTTCTTGGTCAAG
TCATACAAACATGTCATGGAGATATTGCGTATCATTTCACGCTCAATAAT
CAAAAGGTaatcttttgaattttatttttttggaatttcaagcCCATTCA
AGgtcaaatattttcatgtctCACGTATGTTTCATTGTTCGAGAAATTTT
GTCGCAAAAATACTTTGGTCGGGTagaaaaatcgagaaaaacttTGTCGT
TTTTGTGGGAATCATTTTTGTCACCCCATTGAAGTTaaccagaaaaattt
tttatcgGGAGATAATGCTGTCTCGTCACTTCTCTCCGGTTAATTTTTCC
CCTTTAGGCAAATTTCAAGGGTTTTGAGCTGCTaccgtttttatttcaaa
gattgaGTTTGAATTCAGttcgaaaaacaaaattatcGACCCAGGCTCTG
TTTAATTAGTTGCGAActattaaaacacaaagaatccACCTCAGAATGGG
TTTTTTTGTTAATATGGGGCCTAggacatcaaatttttgtcaTGATTCTC
ATGGCTCATGTACAAAAATtaggattgagtttcaaaattcaagcaaAGAT
TGAGTTTCGGCCACTGTTATCTGGTAGCAGAAAAGGCCTGGAAAGTTGCC
TTCCCTTGGATGTAGTATCTGAACGGTTACAGATAAAAACCTTTGGTCTC
TTGAACTTAAataaggtgggagtcacatgaagttttgagatttggtgaaa
aaattatcgatttcgGGATTTTGCGCGTTTTATGACCCTATACCCTTTCT
GAACAcactctgaaaattttaaggccgtAGCACTTATATTTCCTGAGATA
TAAGCTTTTTTCTAGACCCTGATCTAAAGTATTCTCCTTAGcaacgaaaa
atcatacccgttgctagggcccaatttctttatggctgatctaaacatag
gatcatgacataccaaacgaaagatctttttacgcccttttcgggcgtct
aaatcaataccgcctttttttcgcgggatttcctaatatgacgtaatcaa
agatggtaaccaaagaagtgatattttaaaaaacatacaaattttGGAGG
CTGTCAGCCAGTCAGCAGTGTTTTTGACTATGAAAACTGCTTTAATTTGT
AAAATGTTGGATTGACTGATGACATTTTAGCTCTTTAATGTCATTCTTCT
CAACTAAGAAAGCTTGAGCTAGGTGAAACCAAAGACTTGATTCTCAAACT
CAAAGTTTTCGATATGAACTTAGTTTGACGACACCGAAAAACTTACTGAA
GGACGAAGACCAAAGGcatattcaatgatgtatctatttaaagATCCAAG
TTTCAAAGGAATTGAAAGCCTGGAGGCTGGTTTAACAGTTGCGTGTGATG
AATTATTGAAGGTCTAGGGCGCTCCCACCGCCCCTATGGCTGGATTATTT
ACATCATTCACGAAGAAATCGTGCACGGCTAGATGTCCAAGTGGATTCTT
GTATCACAACAGATTAACTTTAGATTAACCTATAACTGACAAAATCAGTG
AGGAAAATATACTAGGATGAtctattacattgaaaatatggtttttgttg
tgaaaacacatttaaattgacttaaatcaatgttgacgtggagtttggcg
caaaattttaaggattggcGCACATCATGTGAAAGtgataatttggaatt
tctggactattttgatatttcaaagccTTTTCTAAAGTATATAAAGTAGA
ACTATAGTCCATTTTAGTCAAACAgagaaagaattttgtaaaacggtcga
TTTATTACAGAGAAATAGAGATATATATCTACTTTTGACTTTACGGAccg
ttttctcaaaataggtttcagggggttttcgcacaccttggcaacgtttt
ctcaggattgacaagtgctatgaacttgaaattttcaggagaaatTCAAT
TTATGGTCTAGAGTGTTATGAATggattacatttttgaaaaaatactttt
ttgattcctaaattcaaaaaatgcattttttaatttccagaccccctgga
atgaaatttcaaaaaaaaattccattcatAACACTCCTTATCCAAATATT
AACaagctgcaaaaaaaatttttgtgataggttttgtagatttttctaaa
acgttgACACGATATTTTCACAGTAcattaccccctggctgattttaccc
ccgtcttggttatttttagatttttttttacattttacaaagCATCTATT
GTTAAGTTTCCTctgtagaaaatttcatttaaaaatctcttcaagttcaa
aagttatacagaaaaatgtaaaaaatcaactttctcaatttttcatgtga
ctcccaccaAAACATCTAAGGAAGATTTTTACTCCAATCCtctaatttct
tataaaaaaacaacctgTCATGCTTGTGATTACTCCTGTCATCCTTttca
gtggcgtggtgggaaaatttctctgggggGGGCCAAGGCAAAcatggcgc
cctttttaaagattttttgtttttggcgcccctcatttttgggcgcccct
tctcaaaagggctccgATGGGGGGGGCTGGCCCcctggcccccccccccc
cccccccgccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATTTTTTGAAATATACTAGTAAGgcatttcaattg
ttttcaaatctttaaatgttctcataaaaagttTGCTAAAAATTTGCGAC
AAATTTTATCCAACTTCGTTATTTTTTTGTAGGAGGAATTCCAGGAAGGT
GAGGTTATTGGATTTTTCGGTCAAGACAGCAAGCAAACAGTAGAAaagct
gacgtcagcaaattgCAAAGATGTCAAGCTACAAGGGGTGGTTACTCGAT
CGCAATACTTTGAAGGGATGAAACCGCGAAATGCAGATAGTAAGTAGAAT
GAAATTTCCCTCGTTTTTAATAGGTCTCAGATCTTTAACATGGGATTTTA
ATCTCTTAGATAAGGCGAGACCGATTTGATTAGTTGTTGACCCAAGCGAC
CCTAAAATTCCAAACatcgaaatgaaaataaaatttattttgatagtaca
tttttattttcattgctttgcagactgccaaattttcaaaattctagttt
tatttttatatttttgccgACTGACCGACCACGTAGCTTGGCCCAGGGTG
AATAATACTTTTTTCAATCAAGTATATTTAGCTATAGATTGCTGTGCTGT
TAGGCTACGTCATACCGTCCTTCGTTTTTAGCTTAAAACGGTCTATTGTG
TTGACTCGATTGCTGTTCGATCAATTTTACCCACGAGTAAGGGAAAATTA
TTATGACCAGGTTAGCTTCGAGAAGGACTTGAGCTTTTCTAAGAAAGGTA
CTGTGGGTAGTTAATCTCATTTGAGATGTtaagaaattttagaaatgttG
GAATAAGACTCATTTTAAAATCTGATATCGTGCCAAATTTATGTAAAAGA
TGTGTGGGTGTTGCTTTTTATTGGTATTTTGAGAAAACtgcaaattttta
gattttatcttTCATTTCAAGTATTAGCCCACacaatttatttctttttc
gtATTTTATTGACTATTGACAGAAAATCCAACTCCTTTTTATGGCGTAGG
TTTTACACCCACATCCCTACACTTTAACTAGAaacactttcttttgtttt
atacaACCCCTTCTCTTAAAACGAAacccctaaaaatgacattcagCAAA
CATATTGCAGACTTTCGATGATTTTTGTTACTGATTTTACCGCGACGTGT
TTTTAATATATTAGAAAGAAACACCCATACTTATCGGTTTaattttaaag
ggataatcagatgttTTGAGATAGTTGGCCTGCAGAAAGCTTATGTGGGC
TTGAGTAAAACCTCCAAGTATGTTTGGGTAACTATTTTCcaacttttcaa
atttctgaaaatgggttCTCACACGGTTCTTatgttgaaattctattttt
ttcttaCTAGGGCTTGTAATTTAAATGTCTCAACTTTGGAAAATctttag
gcaaaaatattttgaggttttgctcaggacaatagaaagattacacatgc
caaatatctcaaaccatatgattatccctttaacctTGGTATTGCTACGA
CATCTTGGTTTTATCTAAACTGAATTCCATGACAAAAACAATAagtattt
gaatatattttcgcgaGGAGGTCTATTGCTTAGTCCCTTTAAAAACTTGA
CATATAATAGAAAAATACTCAATGGCTATCGCCAAAAGAATTGCGAGTAG
GAAATTTCAGAGAGACCAATTGGATCAACTGATCTTTCCAATTAAGGTGT
TTTTTTCCCCAGAACTGAGGAGATGAAGTAACCTCTCTAACACATTTCCA
ATCCGCTCAGAGTTTTCTTTTCAGTGATCTAGCTtagaggttttattttt
acacaagtgttcccgtttcatatcagacacatatttcatgtcgggacagt
gtctgcctattgttatattatgctgaaataagcaaaacaatgtttttctt
ttcctctctctggccaatcttgctccacatccgtgtcaatctaacgtgaa
aaagcttgcgaattgaaattgatgagtaagcaaacgatatcactcttatt
taaaaacaaaacctttaacggAAGTAAGGATCTTTTGAATTCATGAAAAC
CTATCAATATTTATCTTACATACAGCCTCAACAGAAACAATATGTTTGAT
GGGTGTGGTTCCAGTCAAAGTGATTGGTAAAGTTCAACCACGTGATGCTC
TTTACTCGTGCCCAGACCACCCTGGTGTCGCAATCAGCCAATCAGAGTTG
AGTAAAGACGATACAGAGAAATCGAAGTATGCTTTTGTCGGAATGGCTTT
TGAAGGGAAACCTTTAAATGATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067871-exon-scaffold_477-1491911889:76422..76927 | TCONS_00067871-exon-scaffold_477-1491911889:76422..76927 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1510915933:76422..76927 | TCONS_00067871-exon-scaffold_477-1510915933:76422..76927 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1575043694:76422..76927 | TCONS_00067871-exon-scaffold_477-1575043694:76422..76927 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1491911889:80104..80260 | TCONS_00067871-exon-scaffold_477-1491911889:80104..80260 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1510915933:80104..80260 | TCONS_00067871-exon-scaffold_477-1510915933:80104..80260 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1575043694:80104..80260 | TCONS_00067871-exon-scaffold_477-1575043694:80104..80260 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1491911889:82047..82248 | TCONS_00067871-exon-scaffold_477-1491911889:82047..82248 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1510915933:82047..82248 | TCONS_00067871-exon-scaffold_477-1510915933:82047..82248 | Clytia hemisphaerica | exon |
| TCONS_00067871-exon-scaffold_477-1575043694:82047..82248 | TCONS_00067871-exon-scaffold_477-1575043694:82047..82248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:76422..82248 + |
Blast
The following BLAST results are available for this feature:
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