|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067870 ID=TCONS_00067870|Name=TCONS_00067870|organism=Clytia hemisphaerica|type=transcript|length=532bp
AAGTGTTTTCCCATTTCTTCTTATATCTTTACAGAAAAgacgTTGCAGTG
AAAGGCTTGATAGCAGAAGATATCCGAGTGAAACTCCTTCAAATTGAGAA
GCAGTTTCTTGGTCAAGTCATACAAACATGTCATGGAGATATTGCGTATC
ATTTCACGCTCAATAATCAAAAGGAGGAATTCCAGGAAGGTGAGGTTATT
GGATTTTTCGGTCAAGACAGCAAGCAAACAGTAGAAaagctgacgtcagc
aaattgCAAAGATGTCAAGCTACAAGGGGTGGTTACTCGATCGCAATACT
TTGAAGGGATGAAACCGCGAAATGCAGATACCTCAACAGAAACAATATGT
TTGATGGGTGTGGTTCCAGTCAAAGTGATTGGTAAAGTTCAACCACGTGA
TGCTCTTTACTCGTGCCCAGACCACCCTGGTGTCGCAATCAGCCAATCAG
AGTTGAGTAAAGACGATACAGAGAAATCGAAGTATGCTTTTGTCGGAATG
GCTTTTGAAGGGAAACCTTTAAATGATTCTAA Run BLAST on NCBI transcript from alignment at scaffold_477:75567..82248+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067870 ID=TCONS_00067870|Name=TCONS_00067870|organism=Clytia hemisphaerica|type=transcript|length=6682bp|location=Sequence derived from alignment at scaffold_477:75567..82248+ (Clytia hemisphaerica)
AAGTGTTTTCCCATTTCTTCTTATATCTTTACAGAAAAggtatcttacat
tttttttgtgttttctgTTTATGACGTAGCTTTTCTGCGGGAAAATTCTC
GAAATTCCATCTTTGTATTTATGTTTAACTTAGATCACTATATCGAAATG
AGTTAGCAGTAGTAAAAGTAGCTTGACAGGAGATATATTTTGCAGGACTT
AATTTAGTtcgagttttttgaagtttttttttttagcaatATTACACCTA
CTTACTTTCAAGGTTCTCTTTTGGACCTTTCCCGGTaatatttttcatag
aaaagtcGTTGGATACCTTAAATTGGGAATAGcactggaaaaatagaaaa
attgctGATTCCCATTCGCACATTGATGAAGGTCCAAAGGGATTTAGATC
GGAAAAAAACAATAAGCCCCCCTCTATAACTTGCAACCAGCCATTGCAGT
ACCCAGTTCATCAATCTCTACAATCAGTGAGAAAATACTTGGCAcgaaag
ggaaattcaccgggaagttttgaaaccacaatcgatttgtaagtgctcta
aagtaggtttgaagggtagagttttaactctgagttttaacgctagactt
aagactagACTTtaagatctgaggatccaaaagctcaaaaatagtccagt
aggcttgaaatatagcctagaaaccaacaAATCCCttccagatcgaaata
atcgatgaaatcaagttgaaggcctgaaattgacattctcgctcgaactt
caattttcgaaaaatggtaaattagccaaaagtaccaatatgttatggca
ctgattgtagctcTGTTTCCCCATCCATTTCAAAATAATATCAAGACATG
TGCGTTTTCTCGAGCGCTTCGGAAAACTAGGACTCCAGAGTAACATCTAC
ACCTGCAGACATTTAAGACGCTTGTAACGGACAGCGTTAGGGATTTTGGA
AAGATGAAAAACTCTTTTTCCTATTCTCCGAGTATACCTTCTATATCCCA
CTACACTTTACCACACTCTGCAAACTAGAATCCAGTCCCTTAGTACACTT
TGTATGATTTTGATAACGCTCTCGAAAGAGTCACGATTGTATCAAGTCta
tttggaaaatcaaaaagtggtgcaaTAGTGGCTCTGGGTGATTGTGTact
taaaatatatattttaaacaCTTGCTCTACTttaggtcagatctctgatc
ttcaccatacatatttttttcttttagacgTTGCAGTGAAAGGCTTGATA
GCAGAAGATATCCGAGTGAAACTCCTTCAAATTGAGAAGCAGTTTCTTGG
TCAAGTCATACAAACATGTCATGGAGATATTGCGTATCATTTCACGCTCA
ATAATCAAAAGGTaatcttttgaattttatttttttggaatttcaagcCC
ATTCAAGgtcaaatattttcatgtctCACGTATGTTTCATTGTTCGAGAA
ATTTTGTCGCAAAAATACTTTGGTCGGGTagaaaaatcgagaaaaacttT
GTCGTTTTTGTGGGAATCATTTTTGTCACCCCATTGAAGTTaaccagaaa
aattttttatcgGGAGATAATGCTGTCTCGTCACTTCTCTCCGGTTAATT
TTTCCCCTTTAGGCAAATTTCAAGGGTTTTGAGCTGCTaccgtttttatt
tcaaagattgaGTTTGAATTCAGttcgaaaaacaaaattatcGACCCAGG
CTCTGTTTAATTAGTTGCGAActattaaaacacaaagaatccACCTCAGA
ATGGGTTTTTTTGTTAATATGGGGCCTAggacatcaaatttttgtcaTGA
TTCTCATGGCTCATGTACAAAAATtaggattgagtttcaaaattcaagca
aAGATTGAGTTTCGGCCACTGTTATCTGGTAGCAGAAAAGGCCTGGAAAG
TTGCCTTCCCTTGGATGTAGTATCTGAACGGTTACAGATAAAAACCTTTG
GTCTCTTGAACTTAAataaggtgggagtcacatgaagttttgagatttgg
tgaaaaaattatcgatttcgGGATTTTGCGCGTTTTATGACCCTATACCC
TTTCTGAACAcactctgaaaattttaaggccgtAGCACTTATATTTCCTG
AGATATAAGCTTTTTTCTAGACCCTGATCTAAAGTATTCTCCTTAGcaac
gaaaaatcatacccgttgctagggcccaatttctttatggctgatctaaa
cataggatcatgacataccaaacgaaagatctttttacgcccttttcggg
cgtctaaatcaataccgcctttttttcgcgggatttcctaatatgacgta
atcaaagatggtaaccaaagaagtgatattttaaaaaacatacaaatttt
GGAGGCTGTCAGCCAGTCAGCAGTGTTTTTGACTATGAAAACTGCTTTAA
TTTGTAAAATGTTGGATTGACTGATGACATTTTAGCTCTTTAATGTCATT
CTTCTCAACTAAGAAAGCTTGAGCTAGGTGAAACCAAAGACTTGATTCTC
AAACTCAAAGTTTTCGATATGAACTTAGTTTGACGACACCGAAAAACTTA
CTGAAGGACGAAGACCAAAGGcatattcaatgatgtatctatttaaagAT
CCAAGTTTCAAAGGAATTGAAAGCCTGGAGGCTGGTTTAACAGTTGCGTG
TGATGAATTATTGAAGGTCTAGGGCGCTCCCACCGCCCCTATGGCTGGAT
TATTTACATCATTCACGAAGAAATCGTGCACGGCTAGATGTCCAAGTGGA
TTCTTGTATCACAACAGATTAACTTTAGATTAACCTATAACTGACAAAAT
CAGTGAGGAAAATATACTAGGATGAtctattacattgaaaatatggtttt
tgttgtgaaaacacatttaaattgacttaaatcaatgttgacgtggagtt
tggcgcaaaattttaaggattggcGCACATCATGTGAAAGtgataatttg
gaatttctggactattttgatatttcaaagccTTTTCTAAAGTATATAAA
GTAGAACTATAGTCCATTTTAGTCAAACAgagaaagaattttgtaaaacg
gtcgaTTTATTACAGAGAAATAGAGATATATATCTACTTTTGACTTTACG
GAccgttttctcaaaataggtttcagggggttttcgcacaccttggcaac
gttttctcaggattgacaagtgctatgaacttgaaattttcaggagaaat
TCAATTTATGGTCTAGAGTGTTATGAATggattacatttttgaaaaaata
cttttttgattcctaaattcaaaaaatgcattttttaatttccagacccc
ctggaatgaaatttcaaaaaaaaattccattcatAACACTCCTTATCCAA
ATATTAACaagctgcaaaaaaaatttttgtgataggttttgtagattttt
ctaaaacgttgACACGATATTTTCACAGTAcattaccccctggctgattt
tacccccgtcttggttatttttagatttttttttacattttacaaagCAT
CTATTGTTAAGTTTCCTctgtagaaaatttcatttaaaaatctcttcaag
ttcaaaagttatacagaaaaatgtaaaaaatcaactttctcaatttttca
tgtgactcccaccaAAACATCTAAGGAAGATTTTTACTCCAATCCtctaa
tttcttataaaaaaacaacctgTCATGCTTGTGATTACTCCTGTCATCCT
TttcagtggcgtggtgggaaaatttctctgggggGGGCCAAGGCAAAcat
ggcgccctttttaaagattttttgtttttggcgcccctcatttttgggcg
ccccttctcaaaagggctccgATGGGGGGGGCTGGCCCcctggccccccc
ccccccccccccgccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATTTTTTGAAATATACTAGTAAGgcatttc
aattgttttcaaatctttaaatgttctcataaaaagttTGCTAAAAATTT
GCGACAAATTTTATCCAACTTCGTTATTTTTTTGTAGGAGGAATTCCAGG
AAGGTGAGGTTATTGGATTTTTCGGTCAAGACAGCAAGCAAACAGTAGAA
aagctgacgtcagcaaattgCAAAGATGTCAAGCTACAAGGGGTGGTTAC
TCGATCGCAATACTTTGAAGGGATGAAACCGCGAAATGCAGATAGTAAGT
AGAATGAAATTTCCCTCGTTTTTAATAGGTCTCAGATCTTTAACATGGGA
TTTTAATCTCTTAGATAAGGCGAGACCGATTTGATTAGTTGTTGACCCAA
GCGACCCTAAAATTCCAAACatcgaaatgaaaataaaatttattttgata
gtacatttttattttcattgctttgcagactgccaaattttcaaaattct
agttttatttttatatttttgccgACTGACCGACCACGTAGCTTGGCCCA
GGGTGAATAATACTTTTTTCAATCAAGTATATTTAGCTATAGATTGCTGT
GCTGTTAGGCTACGTCATACCGTCCTTCGTTTTTAGCTTAAAACGGTCTA
TTGTGTTGACTCGATTGCTGTTCGATCAATTTTACCCACGAGTAAGGGAA
AATTATTATGACCAGGTTAGCTTCGAGAAGGACTTGAGCTTTTCTAAGAA
AGGTACTGTGGGTAGTTAATCTCATTTGAGATGTtaagaaattttagaaa
tgttGGAATAAGACTCATTTTAAAATCTGATATCGTGCCAAATTTATGTA
AAAGATGTGTGGGTGTTGCTTTTTATTGGTATTTTGAGAAAACtgcaaat
ttttagattttatcttTCATTTCAAGTATTAGCCCACacaatttatttct
ttttcgtATTTTATTGACTATTGACAGAAAATCCAACTCCTTTTTATGGC
GTAGGTTTTACACCCACATCCCTACACTTTAACTAGAaacactttctttt
gttttatacaACCCCTTCTCTTAAAACGAAacccctaaaaatgacattca
gCAAACATATTGCAGACTTTCGATGATTTTTGTTACTGATTTTACCGCGA
CGTGTTTTTAATATATTAGAAAGAAACACCCATACTTATCGGTTTaattt
taaagggataatcagatgttTTGAGATAGTTGGCCTGCAGAAAGCTTATG
TGGGCTTGAGTAAAACCTCCAAGTATGTTTGGGTAACTATTTTCcaactt
ttcaaatttctgaaaatgggttCTCACACGGTTCTTatgttgaaattcta
tttttttcttaCTAGGGCTTGTAATTTAAATGTCTCAACTTTGGAAAATc
tttaggcaaaaatattttgaggttttgctcaggacaatagaaagattaca
catgccaaatatctcaaaccatatgattatccctttaacctTGGTATTGC
TACGACATCTTGGTTTTATCTAAACTGAATTCCATGACAAAAACAATAag
tatttgaatatattttcgcgaGGAGGTCTATTGCTTAGTCCCTTTAAAAA
CTTGACATATAATAGAAAAATACTCAATGGCTATCGCCAAAAGAATTGCG
AGTAGGAAATTTCAGAGAGACCAATTGGATCAACTGATCTTTCCAATTAA
GGTGTTTTTTTCCCCAGAACTGAGGAGATGAAGTAACCTCTCTAACACAT
TTCCAATCCGCTCAGAGTTTTCTTTTCAGTGATCTAGCTtagaggtttta
tttttacacaagtgttcccgtttcatatcagacacatatttcatgtcggg
acagtgtctgcctattgttatattatgctgaaataagcaaaacaatgttt
ttcttttcctctctctggccaatcttgctccacatccgtgtcaatctaac
gtgaaaaagcttgcgaattgaaattgatgagtaagcaaacgatatcactc
ttatttaaaaacaaaacctttaacggAAGTAAGGATCTTTTGAATTCATG
AAAACCTATCAATATTTATCTTACATACAGCCTCAACAGAAACAATATGT
TTGATGGGTGTGGTTCCAGTCAAAGTGATTGGTAAAGTTCAACCACGTGA
TGCTCTTTACTCGTGCCCAGACCACCCTGGTGTCGCAATCAGCCAATCAG
AGTTGAGTAAAGACGATACAGAGAAATCGAAGTATGCTTTTGTCGGAATG
GCTTTTGAAGGGAAACCTTTAAATGATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067870-exon-scaffold_477-1491911889:75567..75605 | TCONS_00067870-exon-scaffold_477-1491911889:75567..75605 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1510915933:75567..75605 | TCONS_00067870-exon-scaffold_477-1510915933:75567..75605 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1575043694:75567..75605 | TCONS_00067870-exon-scaffold_477-1575043694:75567..75605 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1491911889:76794..76927 | TCONS_00067870-exon-scaffold_477-1491911889:76794..76927 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1510915933:76794..76927 | TCONS_00067870-exon-scaffold_477-1510915933:76794..76927 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1575043694:76794..76927 | TCONS_00067870-exon-scaffold_477-1575043694:76794..76927 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1491911889:80104..80260 | TCONS_00067870-exon-scaffold_477-1491911889:80104..80260 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1510915933:80104..80260 | TCONS_00067870-exon-scaffold_477-1510915933:80104..80260 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1575043694:80104..80260 | TCONS_00067870-exon-scaffold_477-1575043694:80104..80260 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1491911889:82047..82248 | TCONS_00067870-exon-scaffold_477-1491911889:82047..82248 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1510915933:82047..82248 | TCONS_00067870-exon-scaffold_477-1510915933:82047..82248 | Clytia hemisphaerica | exon |
| TCONS_00067870-exon-scaffold_477-1575043694:82047..82248 | TCONS_00067870-exon-scaffold_477-1575043694:82047..82248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:75567..82248 + |
Blast
The following BLAST results are available for this feature:
|
