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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067736 ID=TCONS_00067736|Name=TCONS_00067736|organism=Clytia hemisphaerica|type=transcript|length=2208bpRun BLAST on NCBI transcript from alignment at scaffold_473:169933..179120- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067736 ID=TCONS_00067736|Name=TCONS_00067736|organism=Clytia hemisphaerica|type=transcript|length=9188bp|location=Sequence derived from alignment at scaffold_473:169933..179120- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067736 vs. Swiss-Prot (Human)
Match: GALT2 (Polypeptide N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=GALNT2 PE=1 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 1.155e-116 Identity = 101/192 (52.60%), Postives = 140/192 (72.92%), Query Frame = 2
Query: 128 FDETSYISKTKLSESEDPYHRHKFNQRISDELDSDRPIPDTRPPQCLEESYDKRLSSTSIIITFHNEARSALLRTIKSVLDRTPPHLLTEIILVDDFSANEKDGALLKDLPKIVLMRNDKREGLIRSRLKGVSVAKSSILTFLDSHCEVNVGWIEPLLAQVEQDPLAIASPVIDIIKTDTLEYKASSNYLKG 703
F++ +Y+ T + +DPY R+KFNQ SD+L DR IPDTR QC + + L +TS++ITFHNEARSALLRT+ SVL ++PPHL+ EIILVDD+S + +DGALL + K+ ++RND+REGL+RSR++G A++ +LTFLDSHCE N W+EPLL +V +D + SP+ID+I D +Y +S LKG
Sbjct: 81 FNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKG 272 HSP 2 Score: 219.164 bits (557), Expect = 1.155e-116 Identity = 119/300 (39.67%), Postives = 174/300 (58.00%), Query Frame = 3
Query: 777 GFDWNMHFIWEPLLEKEMKDHKADTTHTISTPVIAGGLFTVQKQWFNQLGQYDPLLEIWGAENFEISFKTWMCGGSLKIIPCSRIGHIFRKSHPYEFPLGNGHTYLMNVRRVAEVWMDRYKRIFYRARGGNMNEPLPXXXXXXXXXXXXXCRPFDWYLMEVYPELRVPNVDELAYGEIKQIYKGQSYCLSESK--TSKVLAV-KCIPNVKKMQWVMSVTGMIQNEKDKCLYASKKR--KRISLKDCDNSDFNQHW-KFMIRERLRHQATNLCIERKS--DGSLLLARCENFSPQQKWSFT 1652
GFDWN+ F W+ + ++ + + + I TP+IAGGLF + K +F +LG+YD ++++WG EN EISF+ W CGGSL+IIPCSR+GH+FRK HPY FP G+G + N RR AEVWMD YK +Y A N P I+ R +R++L C+PF WYL VYPELRVP+ ++A+G ++Q + CL V+ V +C +W ++ +++ D CL + I L+ C +D Q W + +LRH +NLC++ ++ G L + C QQ W FT
Sbjct: 273 GFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQ----GTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKH-MDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQ-WKFT 566 The following BLAST results are available for this feature:
BLAST of TCONS_00067736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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