TCONS_00067698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067698
Unique NameTCONS_00067698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067698 ID=TCONS_00067698|Name=TCONS_00067698|organism=Clytia hemisphaerica|type=transcript|length=1353bp
ATTAGGCAGAAGCAAGAAACATATTGAAAGTGCAATCACAAAAGGAAAAG
CCAGAGAAAGTGATAGCAAACAAACCACCTGTTAAATCGGCTGGTAAGAA
ACAATTGACACAAGAAATGAAAGGCGGTAGGAATAAACGAATACCTCTTC
GAGTATCTTTGAGGGCTGAAGCTGCCACTGGTAAAGTCCAACAAGAAGAA
AAATCCAAAACGATCGATCTCATTATAAAAGcCGATGTCAGTGGAAGTTT
GGAAGCAATAGTCAATATTTTAAGTCGGTACCATTCGACAGATATCACTT
TGAATGTTCTACATGCTAGCGTTGGAAGTGTGAATGAAAATGATCTTAAA
ATGTTACAAACTTCAGAAGacagcATTGTGTATGCTTTCAATGTGGATGT
CACAAAAAGCCTTATGACACAAGCTGAAAAATTGGACGTCCCTGTCAAGC
AGTTTGATATCATTTACAAACTtctggatgatttaaagGAGAAGCTTGAG
AACACGTTACCGATGAGAAGCGAGGAACACATCATCGGTGAAGCCGAAGT
ATTGAAGGTTTTCAAATTGACCGGTAGCCGAAAGAATGTAGCGGCAGGTT
GTCGCGTCAAAGAGGGTTTCCTCGATAATTCGAACTCTGAACATTTATGG
AAAGTTATACGCGATCACCAACCAGTCTATGAAGCTGGTATCAAATCATT
AAAACGTGGTAAAGAGGACATTGCATTAGCCAAGAAGATGACCGAATGTG
GTGTAACGTTAGATAACTTTGAAGACTATCGAGAGGGAGATAAGATTCTT
TGTGTAAGGGTTGATAGGATCAAACAGGTGGTAGACTGGAAACTATGATC
GAAAGAAAGCATTATAGTGAACCCGTGGTTGATTCTTGGTGCAAAAAGTC
CTGCAGTGGTTTGGCTTGGTAAGATAAGCAAATTGACCGATGCTTTGATA
TTGAAATTGAAGGTAGAAAGTTCTCCTATTTATAATATGCATTTTACATC
AACGTGGTTAGAATGATTTATATTCTTGGGCAAGTTTGGATTAACACGAA
GTGTTTAAAATAATGTCCTGAACAAGGAACATTTTACATGAAACGATGGA
ATAGATTATCTGTTCCACTCTGTCATTTCTCACCAGCTCAAATCTGAATG
AGATTTTTAAATGATCCAAACTACCAGATTCAACAGGAATTGGATTGAAT
TACGAATTCGAAGAATAGCGCAGCACTACAACAGTGATATTTTCGGAATT
CTTTTCATAAAATCTgcaatttagaaatatttttgttactgtatataata
gaaagattttacaattttaaataTGAAGCATTCATGATAAAGCTCAGAAG
TAC
Run BLAST on NCBI

transcript from alignment at scaffold_472:377960..380698-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067698 ID=TCONS_00067698|Name=TCONS_00067698|organism=Clytia hemisphaerica|type=transcript|length=2739bp|location=Sequence derived from alignment at scaffold_472:377960..380698- (Clytia hemisphaerica)
ATTAGGCAGAAGCAAGAAACATATTGAAAGTGCAATCACAAAAGGAAAAG
CCAGAGAAAGTGATAGCAAACAAACCACCTGTTAAATCGGCTGGTAAGAA
ACAATTGACACAAGAAATGAAAGGCGGTAGGAATAAACGAATACCTCTTC
GAGTATCTTTGAGGGCTGAAGCTGCCACTGGTAAAGTCCAACAAGAAGAA
AAATCCAAAACGATCGATCTCATTATAAAAGGTATGCTAGCAGCTCGTTT
AATGCAAAACATTTGACTCCTTATCTGATGGTCATTCATGATTCATCAGC
TTGGAAGCGATAATCTTTCAGTTGTTTGGGAGAAAGAAGAACATTGAATC
TCGTTGTTAATGATTTTGATGATTTTCATATTGTTTCTTTTTTTGTTTAG
CCGATGTCAGTGGAAGTTTGGAAGCAATAGTCAATATTTTAAGTCGGTAC
CATTCGACAGATATCACTTTGAATGTTCTACATGCTAGCGTTGGAAGTGT
GAATGAAAATGATCTTAAAATGTTACAAACTTCAGAAGGTTAGGAGACGT
CATTTTTGGTTTTATCTCTGATTCTTTCCTGGCAAGCATATTTTTTATTA
AAAATATCATGTGTTATCGTCCAAAATAATCATAGATTCACGATATTCAT
TACCGTATTCCCTCCCTCGATTAAGCGAGGAATCAAAATTTAGATTTGGA
GGGTGGTGGTAAATAGAGGGAATATGGTTCTTTATGATGACAGAACAAGT
GGGATTTTTGGTGTTCTTCCACTCGAAAAATAATTCGTCACCAGGGTCAT
GAAATTAGGTTTTGTAGATTTAGATAGACTTTGATCTAGATCGTTAAAGA
TCGCTTTGAAATTATCAGGTTTTTTAATAGCAAGAAAATGATTTAGTTCA
AGACTGTTGGTGTTAAGTTAGGCAAAAACCTTTTATTTTTCAGACAGCAT
TGTGTATGCTTTCAATGTGGATGTCACAAAAAGCCTTATGACACAAGCTG
AAAAATTGGACGTCCCTGTCAAGCAGTTTGATATCATTTACAAACTTCTG
GATGATTTAAAGGTATTATTTTCAGTTATGATTTGGTTTATTACGGACAT
CAACCACTATCAACTAACATCAGACGAAATCAAAGGGGGATTTCATTCGT
ACCAATCTAATTTAAAAAGTGTTGCCGCTCGATCGAGATACGATTAGATT
CAATTTATTCAATTTTTGATTATGTTCGGTTGCTGATCGAAAAACTGTGT
CTTTATCTCCTCATTGCTAGTGTGTTGGAACACACACTTGTCCAACACAC
TAGCAATGTGGAGATGGATTTTTCCCAATTCACTGTCTCTGTCCAGTCAG
TAGACAAGAATTCACTTCCAGCTCTACCGAGTGGCAATTGAGTCCTCGGG
TTCCACATGGACCCGTAGCTCAATAGTAGAGCAAACGCCCGCGAATGTCA
TGGTTGTGAGTTCGAGTCTCACCTTCACTTCAATGTGATTATTTCTTTTG
AAGACAGTCGACCTAGTGTTTTTTTTTCTCCTTGCCATTCAGGAGAAGCT
TGAGAACACGTTACCGATGAGAAGCGAGGAACACATCATCGGTGAAGCCG
AAGTATTGAAGGTTTTCAAATTGACCGGTAGCCGAAAGAATGTAGCGGCA
GGTTGTCGCGTCAAAGAGGGTTTCCTCGATAATTCGAACTCTGAACATTT
ATGGAAAGTTATACGCGATCACCAACCAGTCTATGAAGGTAAGTAGATGG
TGTTTATTGATTTAAATTTGTAGGTTAACTTTGAACAAGTGGTGTTACTT
ACTTTTTGGGGGTTCAAGTAAAAATGTCTTTTCATTATGAGAGTCTGAGC
AATAGAAGGTTACATTCAGTTAAAACTCCTTGGTTAGTCGTGCCGATTTG
CCGTCATTGTTTTCTTGTCACTGTTTACTATCAATGCCATCTTCTGGCAG
ATATTCAGCATCCTCCTTCGTGACTTCGCTGCTTCTTACCGGCTAATATT
CTTTTATATAACGACTGATTGTCAAGTAGTACATCTTTTGTAAACATACA
AAATACTTCTGTTCTGTCAGCTGGTATCAAATCATTAAAACGTGGTAAAG
AGGACATTGCATTAGCCAAGAAGATGACCGAATGTGGTGTAACGTTAGAT
AACTTTGAAGACTATCGAGAGGGAGATAAGATTCTTTGTGTAAGGGTTGA
TAGGATCAAACAGGTGGTAGACTGGAAACTATGATCGAAAGAAAGCATTA
TAGTGAACCCGTGGTTGATTCTTGGTGCAAAAAGTCCTGCAGTGGTTTGG
CTTGGTAAGATAAGCAAATTGACCGATGCTTTGATATTGAAATTGAAGGT
AGAAAGTTCTCCTATTTATAATATGCATTTTACATCAACGTGGTTAGAAT
GATTTATATTCTTGGGCAAGTTTGGATTAACACGAAGTGTTTAAAATAAT
GTCCTGAACAAGGAACATTTTACATGAAACGATGGAATAGATTATCTGTT
CCACTCTGTCATTTCTCACCAGCTCAAATCTGAATGAGATTTTTAAATGA
TCCAAACTACCAGATTCAACAGGAATTGGATTGAATTACGAATTCGAAGA
ATAGCGCAGCACTACAACAGTGATATTTTCGGAATTCTTTTCATAAAATC
TGCAATTTAGAAATATTTTTGTTACTGTATATAATAGAAAGATTTTACAA
TTTTAAATATGAAGCATTCATGATAAAGCTCAGAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042263XLOC_042263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067698-exon-scaffold_472-1575043694:380468..380698TCONS_00067698-exon-scaffold_472-1575043694:380468..380698Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1575043694:380161..380298TCONS_00067698-exon-scaffold_472-1575043694:380161..380298Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1575043694:379637..379755TCONS_00067698-exon-scaffold_472-1575043694:379637..379755Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1575043694:378961..379156TCONS_00067698-exon-scaffold_472-1575043694:378961..379156Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1575043694:377960..378628TCONS_00067698-exon-scaffold_472-1575043694:377960..378628Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1510915933:380468..380698TCONS_00067698-exon-scaffold_472-1510915933:380468..380698Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1510915933:380161..380298TCONS_00067698-exon-scaffold_472-1510915933:380161..380298Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1510915933:379637..379755TCONS_00067698-exon-scaffold_472-1510915933:379637..379755Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1510915933:378961..379156TCONS_00067698-exon-scaffold_472-1510915933:378961..379156Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1510915933:377960..378628TCONS_00067698-exon-scaffold_472-1510915933:377960..378628Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1491911889:380468..380698TCONS_00067698-exon-scaffold_472-1491911889:380468..380698Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1491911889:380161..380298TCONS_00067698-exon-scaffold_472-1491911889:380161..380298Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1491911889:379637..379755TCONS_00067698-exon-scaffold_472-1491911889:379637..379755Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1491911889:378961..379156TCONS_00067698-exon-scaffold_472-1491911889:378961..379156Clytia hemisphaericaexon
TCONS_00067698-exon-scaffold_472-1491911889:377960..378628TCONS_00067698-exon-scaffold_472-1491911889:377960..378628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:377960..380698 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3134	10.8593	9.26006	7.66962	7.10729	6.68358	9.48522	8.52104	6.85011	8.05862	7.82341	5.45625	6.8404	5.61836	8.1914	9.46905	9.45225	12.0864	3.42948	4.79445	4.41012	4.87672	15.178	14.0706	6.28702	7.68877	14.7225	8.17188	15.5277	14.5543
Blast
[Close]
BLAST of TCONS_00067698 vs. Swiss-Prot (Human)
Match: IF2M (Translation initiation factor IF-2, mitochondrial OS=Homo sapiens GN=MTIF2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.191e-32
Identity = 86/241 (35.68%), Postives = 142/241 (58.92%), Query Frame = 3 
Query:  129 RNKRIPLRVSLRAEAATGKVQQEEKSKTIDLIIKADVSGSLEAIVNILSRYHST-DITLNVLHASVGSVNENDLKMLQTSEDSIVYAFNVDVTKSLMTQAEKLDVPVKQFDIIYXXXXXXXXXXXNTLPMRSEEHIIGEAEVLKVFKLTGSRKNV-AAGCRVKEGFLDNSNSEHLWKVIRDHQPVYEAGIKSLKRGKEDIALAKKMTECGVTL--DNFEDYREGDKILCVRVDRIKQVVDW 839
            R ++IPL+          K ++E  S  + +IIK DV GS+EAI+NI+  Y ++ +  L ++H  VG V+ ND+ + +T  D ++Y FNV+    +   A K  V +K   IIY+L++DL+E+L + LP   EEH +GEA +L  F +T  +K V  AGCRV++G L+       +K+ R+   +++  + SLK  K+DI++ K   +CG++L  DN E ++ GD+I+C    +I+    W
Sbjct:  497 RKEQIPLK---------PKEKRERDSNVLSVIIKGDVDGSVEAILNIIDTYDASHECELELVHFGVGDVSANDVNLAETF-DGVIYGFNVNAGNVIQQSAAKKGVKIKLHKIIYRLVEDLQEELSSRLPCAVEEHPVGEASILATFSVTEGKKKVPVAGCRVQKGQLEKQKK---FKLTRNGHVIWKGSLTSLKHHKDDISIVKTGMDCGLSLDEDNME-FQVGDRIVCYEEKQIQAKTSW 723
The following BLAST results are available for this feature:
BLAST of TCONS_00067698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF2M1.191e-3235.68Translation initiation factor IF-2, mitochondrial ... [more]
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