TCONS_00065826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065826
Unique NameTCONS_00065826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065826 ID=TCONS_00065826|Name=TCONS_00065826|organism=Clytia hemisphaerica|type=transcript|length=563bp
GCTGAAGGAGCAGCCCAGGCTACAGGCTGTACAATGGACATGAAGCAAAG
TGCGCCCTCTTGGTCTGCTGTCAACACAAATCAAGTCATGATTGATCTTT
ACATCGAAAATGCAAAATCACTTGGTGTTTCTTTTGAAGACGACCATGCG
AGAGAAACCTTCCAAGCGGCAACAGATATGGGAAACGTTTCAGTTGTAAA
ACCGTCCATTCATCCTTATTACAAAATACAAACAGAAGAGATAAACCACA
ACCATGGATTTACAAAAGCCGCTGGATCTGCAGAAAGTCAGTTACCAACA
TTGAATACTGCAAAGAGTATGGCAATGACCGTTATTGATATCGTTTGCGA
GGAAGGACTTTTACAAAAGGTTCAGAAAGGTTTTAAAGAATCTTTACTTT
CGTGATGGAATATAACGAACATGTGATTGTTAAGCTTCCAAAAACACAGA
TATTCAGTtgtctctctctaattcaatcttcaagggacaaacaaagaaag
aattttctcaattagggaaagattcgaattacagagagtatttaATACGA
TTTTTCAGTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00065826-protein

>TCONS_00065826-protein ID=TCONS_00065826-protein|Name=TCONS_00065826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
AEGAAQATGCTMDMKQSAPSWSAVNTNQVMIDLYIENAKSLGVSFEDDHA
RETFQAATDMGNVSVVKPSIHPYYKIQTEEINHNHGFTKAAGSAESQLPT
LNTAKSMAMTVIDIVCEEGLLQKVQKGFKESLLS
Run BLAST on NCBI

transcript from alignment at scaffold_446:25769..26687-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065826 ID=TCONS_00065826|Name=TCONS_00065826|organism=Clytia hemisphaerica|type=transcript|length=919bp|location=Sequence derived from alignment at scaffold_446:25769..26687- (Clytia hemisphaerica)
GCTGAAGGAGCAGCCCAGGCTACAGGTTTGAATTTATCTTTTAATCCCCC
TGAAAAGTTTTATCGATAGAATTAACCTTTCCTATTCGTGTTTTTTGATT
TCTAATTTCAGTTCAGCTCAATTTTGACAATACTTGAGTGTTTGTTTGTC
TATCTGTCCGCCTGTCTGGAGCAATGTGAAAGTAAATAATGATTTTTGGG
CAATGACGACGAGTTTTTCAGCATTTAAAATTTGGAATAGTGTGGAGATT
TTAAATAATGTCAGATTTTTTCCTTAAAAAATACCTAAAATTTTGAATTT
GAATGCCAAAAAATGGTTTTTAGTTTTAGAAATTATAGAAATTATTGTTC
AGAGGAAAGTTCTCTCTCTAAATTTTCACAGGCTGTACAATGGACATGAA
GCAAAGTGCGCCCTCTTGGTCTGCTGTCAACACAAATCAAGTCATGATTG
ATCTTTACATCGAAAATGCAAAATCACTTGGTGTTTCTTTTGAAGACGAC
CATGCGAGAGAAACCTTCCAAGCGGCAACAGATATGGGAAACGTTTCAGT
TGTAAAACCGTCCATTCATCCTTATTACAAAATACAAACAGAAGAGATAA
ACCACAACCATGGATTTACAAAAGCCGCTGGATCTGCAGAAAGTCAGTTA
CCAACATTGAATACTGCAAAGAGTATGGCAATGACCGTTATTGATATCGT
TTGCGAGGAAGGACTTTTACAAAAGGTTCAGAAAGGTTTTAAAGAATCTT
TACTTTCGTGATGGAATATAACGAACATGTGATTGTTAAGCTTCCAAAAA
CACAGATATTCAGTTGTCTCTCTCTAATTCAATCTTCAAGGGACAAACAA
AGAAAGAATTTTCTCAATTAGGGAAAGATTCGAATTACAGAGAGTATTTA
ATACGATTTTTCAGTTGAG

Coding sequence (CDS) from alignment at scaffold_446:25769..26687-

>TCONS_00065826 ID=TCONS_00065826|Name=TCONS_00065826|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_446:25769..26687- (Clytia hemisphaerica)
GCTGTACAATGGACATGAAGCAAAGTGCGCCCTCTTGGTCTGCTGTCAAC
ACAAATCAAGTCATGATTGATCTTTACATCGAAAATGCAAAATCACTTGG
TGTTTCTTTTGAAGACGACCATGCGAGAGAAACCTTCCAAGCGGCAACAG
ATATGGGAAACGTTTCAGTTGTAAAACCGTCCATTCATCCTTATTACAAA
ATACAAACAGAAGAGATAAACCACAACCATGGATTTACAAAAGCCGCTGG
ATCTGCAGAAAGTCAGTTACCAACATTGAATACTGCAAAGAGTATGGCAA
TGACCGTTATTGATATCGTTTGCGAGGAAGGACTTTTACAAAAGGTTCAG
AAAGGTTTTAAAGAATCTTTACTTTCGTGAGCTGAAGGAGCAGCCCAGGC
TACAGGCTGTACAATGGACATGAAGCAAAGTGCGCCCTCTTGGTCTGCTG
TCAACACAAATCAAGTCATGATTGATCTTTACATCGAAAATGCAAAATCA
CTTGGTGTTTCTTTTGAAGACGACCATGCGAGAGAAACCTTCCAAGCGGC
AACAGATATGGGAAACGTTTCAGTTGTAAAACCGTCCATTCATCCTTATT
ACAAAATACAAACAGAAGAGATAAACCACAACCATGGATTTACAAAAGCC
GCTGGATCTGCAGAAAGTCAGTTACCAACATTGAATACTGCAAAGAGTAT
GGCAATGACCGTTATTGATATCGTTTGCGAGGAAGGACTTTTACAAAAGG
TTCAGAAAGGTTTTAAAGAATCTTTACTTTCGTGAGCTGAAGGAGCAGCC
CAGGCTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041239XLOC_041239Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065826-proteinTCONS_00065826-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065826-exon-scaffold_446-1575043694:26663..26687TCONS_00065826-exon-scaffold_446-1575043694:26663..26687Clytia hemisphaericaexon
TCONS_00065826-exon-scaffold_446-1575043694:25769..26306TCONS_00065826-exon-scaffold_446-1575043694:25769..26306Clytia hemisphaericaexon
TCONS_00065826-exon-scaffold_446-1510915933:26663..26687TCONS_00065826-exon-scaffold_446-1510915933:26663..26687Clytia hemisphaericaexon
TCONS_00065826-exon-scaffold_446-1510915933:25769..26306TCONS_00065826-exon-scaffold_446-1510915933:25769..26306Clytia hemisphaericaexon
TCONS_00065826-exon-scaffold_446-1491911889:26663..26687TCONS_00065826-exon-scaffold_446-1491911889:26663..26687Clytia hemisphaericaexon
TCONS_00065826-exon-scaffold_446-1491911889:25769..26306TCONS_00065826-exon-scaffold_446-1491911889:25769..26306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:25769..26687 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.9395	18.6839	33.6494	41.3894	2.07187	1.17668	15.0358	15.3392	17.8723	15.2989	11.6998	11.966	10.0174	7.94011	10.5795	13.8097	6.67721	4.96638	5.61533	6.26528	2.70573	3.58104	12.8902	10.5421	6.71481	6.28243	4.14018	5.10549	8.67821	7.78543
Blast
[Close]
BLAST of TCONS_00065826 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.885e-27
Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 1 
Query:   10 AAQATGCTMDMKQSAPSWSAVNTNQVMIDLYIENAKSLGVSF-EDDHARETFQAATDMGNVSVVKPSIHPYYKIQTEEINHNHGFTKAAGSAESQLPTLNTAKSMAMTVIDIVCEEGLLQKVQKGFKESL 396
            AA A+GCT+++K  A  +  V  N+ +   Y+EN + LG+ F  +D        +TD GNVS V P IHPY+ I +  +NH   +T+AAGS E+Q  TL TAK++AMT +D++ +  LL+ +++ FK  L
Sbjct:  297 AALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFKLKL 426
The following BLAST results are available for this feature:
BLAST of TCONS_00065826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P20D23.885e-2740.77Peptidase M20 domain-containing protein 2 OS=Homo ... [more]
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