TCONS_00065762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065762
Unique NameTCONS_00065762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065762 ID=TCONS_00065762|Name=TCONS_00065762|organism=Clytia hemisphaerica|type=transcript|length=416bp
CTTTGAAGTAGAATGCCTTTTGTTGTGCGCTATTTCTAACAGAAACCATG
TTCATTTTTCGAATACTACTGGAAAATGCAGTTGTATCGAGAAAGTTTGT
GCAACTAACGGGATTGATGGTTTTTGGTatcaaaagGAAGCTGACAAatc
aaatgaagaagaagacaGTCTATCAACAACAAGAGCCGAAACTACAACAA
TAAGCAATCAAGTTTTTCCCATGGAAATCCAGCACTATGTATCACAAGGT
TCATCAGAAGACGCAACAACGGCAACAACATCTTCAACGACAAGAGCTAC
TCCAACAACAGTGACTTCAACAAGCCCCACAACATCTTCTCCGACCACCT
CCactacgacaacgaccactccttctatgacaacgaccactcctactacg
acaacgaccactccta
Run BLAST on NCBI

protein sequence of TCONS_00065762-protein

>TCONS_00065762-protein ID=TCONS_00065762-protein|Name=TCONS_00065762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
FEVECLLLCAISNRNHVHFSNTTGKCSCIEKVCATNGIDGFWYQKEADKS
NEEEDSLSTTRAETTTISNQVFPMEIQHYVSQGSSEDATTATTSSTTRAT
PTTVTSTSPTTSSPTTSTTTTTTPSMTTTTPTTTTTTP
Run BLAST on NCBI

transcript from alignment at scaffold_444:88228..89514-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065762 ID=TCONS_00065762|Name=TCONS_00065762|organism=Clytia hemisphaerica|type=transcript|length=1287bp|location=Sequence derived from alignment at scaffold_444:88228..89514- (Clytia hemisphaerica)
CTTTGAAGTAGAATGCCTTTTGTTGTGCGCTATTTCTAACAGAAACCATG
TTCATTTTTCGAATACTACTGGAAAATGCAGTTGTATCGAGAAAGTTTGT
GCAACTAACGGGATTGATGGTTTTTGGTATCAAAAGGTAAAAAAAATTAG
TTTTTGTGGAGTAAGTTTACTGTCCATTTTTCTTCATTAATACATTATTA
AACGCATGTGTCACAGACCCGGTAGGACCCCCTAACCACTGGAAAATTTG
GCTAAATTTCATCCCTGAAAAATGCCCTATATTTATTAACCCACTGGAAA
ATTGACTTTGTTTTCGACCCCATTTAAAATTTTTGACCTGGAAACGATCG
AATTTCTATCCTCATTGGGTTTTTGATAGCAATTTTCATCTTCACTGAGG
GAAGAAGTTTCATCGGGGCTGTGAGACGGGGGTGTATTATTCATTTTGTA
ATCTCATGGTTGATTGAATTTCGATTGACGTTTTTACTTACGTTAATTTG
CAATTTCCCGCGAACTTGTAATTTCCTTCCTAGGTTTTGTAATTTCCCTC
CAAGGTTTTGTATTTTCCCGCAAAAGTGAAATTTTCATTGTTTGGAAATT
CATCACCTTTTCCGAATTTCTTACTAACTTCGAAGGCTTAAAAGTAAATG
GAATAGTATCCAATTATACATTATACTCGATTCGCGTTTCTATGACTTTT
TTGAGACCTCACTTTCAGATTGATTTCCAGTGTTAAATTGACGTCTTTCA
GAATTGTTAGAATTTCAATCCAAACCCAGAATCCCATGCTTGTTTCCATG
AAATCCTGGATAAATTACTCTCGGTCAAATTGCGAAATATTTTAAATTTC
CCTCGTTGCACTCGGGAAATTTCACAAACTTTCAAAATTGACCTCGGGAA
ATTTATCCCGAATTTCCCTCATAACCATGAGATTACACTATTACAAAAAT
GCTGCTCTATTCTTAATAATTTCAGAATTCCTTCAAAATAATACTGTTTC
TTTGCAGGAAGCTGACAAATCAAATGAAGAAGAAGACAGTCTATCAACAA
CAAGAGCCGAAACTACAACAATAAGCAATCAAGTTTTTCCCATGGAAATC
CAGCACTATGTATCACAAGGTTCATCAGAAGACGCAACAACGGCAACAAC
ATCTTCAACGACAAGAGCTACTCCAACAACAGTGACTTCAACAAGCCCCA
CAACATCTTCTCCGACCACCTCCACTACGACAACGACCACTCCTTCTATG
ACAACGACCACTCCTACTACGACAACGACCACTCCTA

Coding sequence (CDS) from alignment at scaffold_444:88228..89514-

>TCONS_00065762 ID=TCONS_00065762|Name=TCONS_00065762|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_444:88228..89514- (Clytia hemisphaerica)
GAAGCTGACAAATCAAATGAAGAAGAAGACAGTCTATCAACAACAAGAGC
CGAAACTACAACAATAAGCAATCAAGTTTTTCCCATGGAAATCCAGCACT
ATGTATCACAAGGTTCATCAGAAGACGCAACAACGGCAACAACATCTTCA
ACGACAAGAGCTACTCCAACAACAGTGACTTCAACAAGCCCCACAACATC
TTCTCCGACCACCTCCACTACGACAACGACCACTCCTTCTATGACAACGA
CCACTCCTACTACGACAACGACCACTCCTTTTGAAGTAGAATGCCTTTTG
TTGTGCGCTATTTCTAACAGAAACCATGTTCATTTTTCGAATACTACTGG
AAAATGCAGTTGTATCGAGAAAGTTTGTGCAACTAACGGGATTGATGGTT
TTTGGTATCAAAAGGAAGCTGACAAATCAAATGAAGAAGAAGACAGTCTA
TCAACAACAAGAGCCGAAACTACAACAATAAGCAATCAAGTTTTTCCCAT
GGAAATCCAGCACTATGTATCACAAGGTTCATCAGAAGACGCAACAACGG
CAACAACATCTTCAACGACAAGAGCTACTCCAACAACAGTGACTTCAACA
AGCCCCACAACATCTTCTCCGACCACCTCCACTACGACAACGACCACTCC
TTCTATGACAACGACCACTCCTACTACGACAACGACCACTCCTTTTGAAG
TAGAATGCCTTTTGTTGTGCGCTATTTCTAACAGAAACCATGTTCATTTT
TCGAATACTACTGGAAAATGCAGTTGTATCGAGAAAGTTTGTGCAACTAA
CGGGATTGATGGTTTTTGGTATCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041199XLOC_041199Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065762-proteinTCONS_00065762-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065762-exon-scaffold_444-1575043694:89379..89514TCONS_00065762-exon-scaffold_444-1575043694:89379..89514Clytia hemisphaericaexon
TCONS_00065762-exon-scaffold_444-1575043694:88228..88507TCONS_00065762-exon-scaffold_444-1575043694:88228..88507Clytia hemisphaericaexon
TCONS_00065762-exon-scaffold_444-1510915933:89379..89514TCONS_00065762-exon-scaffold_444-1510915933:89379..89514Clytia hemisphaericaexon
TCONS_00065762-exon-scaffold_444-1510915933:88228..88507TCONS_00065762-exon-scaffold_444-1510915933:88228..88507Clytia hemisphaericaexon
TCONS_00065762-exon-scaffold_444-1491911889:89379..89514TCONS_00065762-exon-scaffold_444-1491911889:89379..89514Clytia hemisphaericaexon
TCONS_00065762-exon-scaffold_444-1491911889:88228..88507TCONS_00065762-exon-scaffold_444-1491911889:88228..88507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:88228..89514 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.085695	0	0	0	0	0.0913207	0	0	0	0.0894481	0	0.0570724	0	0	0.0973209	0.208881	0.192993	0.131874	0.455479	0.19065	1.32568	1.33365	0.196512	0.446646	1.23094	2.46342	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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