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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065753 ID=TCONS_00065753|Name=TCONS_00065753|organism=Clytia hemisphaerica|type=transcript|length=419bp
GTGGTTTAGAGTTATCCACCACATCAACGCCACCAGATACTGTGTTTCCA
TCACCATTATTGCTGACTTTTGATAGATCCAAATGTGAAGAGATTGATGT
CAGCATACTTTGGATTTTTGCTTCTCTATCGCATTTCTCTTTGATTTCGA
TGTACAGCTCACCACTGATTAACATACCGACAACAGAGAGCTGCCATTCT
CTTCCTTCGCCAAACACAATTGGAACAACTGGCTTCTTCAAGGTTGATTT
GGCAAACTGGAATTCCATGCGACACGTCTGGTTTTGCGTGTACTGATCAC
TAATGCACGCTACAAAGACCTTGGCTTTCTTCATCATCAGGTTAGCGTGT
TTCATTGAATTCAAGCGTGCTTCTGCATCAAGTTCATTGCTCAAATCTTT
ACTCTGAATCACCGAGATT Run BLAST on NCBI transcript from alignment at scaffold_444:78610..79481+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065753 ID=TCONS_00065753|Name=TCONS_00065753|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at scaffold_444:78610..79481+ (Clytia hemisphaerica)
GTGGTTTAGAGTTATCCACCACATCAACGCCACCAGATACTGTGTTTCCA
TCACCATTATTGCTGACTTTTGATAGATCCAAATGTGAAGAGATTGATGT
CAGCATACTTTGGATTTTTGCTTCTCTATCGCATTTCTCTTTGATTTCGA
TGTACAGCTCACCACTGATTAACATTCCTAAAATAAACGTTGAACACTTT
TGTATCCAAACCAAAGTTTACGGTGTTATACAGCTATATCAGAATATAGA
CAAGAGAAATTTAATGATGTATCAATTTACCagttattggtcaaaagaaa
aatgaagcaactccattggtgcaATCTGACGTAGcggttgaaaaaattga
aatgtgtcaaagccaaaaagtgcgatagAAGCGCGTGCAAGTAGAGACTG
GCCTTTAGACCTCGTATTGTTCATTGACTCAGCTCTCATTCGAGATCATT
GGTGATTGGAAAATAGTTTTCTTTTCTCGCATAAAAACCACTTCTGAATG
AAACTACAATAAGTCTTCACAGTTCAGTTTTTACTGTGAATCTCACATTA
GGAATTCAATCACTTAATGTCTAGTTCACAAAAGAAGTAAGAGAAGCCAT
AGGCACGAGAAATGGAACCTAATGACATACCGACAACAGAGAGCTGCCAT
TCTCTTCCTTCGCCAAACACAATTGGAACAACTGGCTTCTTCAAGGTTGA
TTTGGCAAACTGGAATTCCATGCGACACGTCTGGTTTTGCGTGTACTGAT
CACTAATGCACGCTACAAAGACCTTGGCTTTCTTCATCATCAGGTTAGCG
TGTTTCATTGAATTCAAGCGTGCTTCTGCATCAAGTTCATTGCTCAAATC
TTTACTCTGAATCACCGAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065753-exon-scaffold_444-1491911889:78610..78782 | TCONS_00065753-exon-scaffold_444-1491911889:78610..78782 | Clytia hemisphaerica | exon |
| TCONS_00065753-exon-scaffold_444-1510915933:78610..78782 | TCONS_00065753-exon-scaffold_444-1510915933:78610..78782 | Clytia hemisphaerica | exon |
| TCONS_00065753-exon-scaffold_444-1575043694:78610..78782 | TCONS_00065753-exon-scaffold_444-1575043694:78610..78782 | Clytia hemisphaerica | exon |
| TCONS_00065753-exon-scaffold_444-1491911889:79236..79481 | TCONS_00065753-exon-scaffold_444-1491911889:79236..79481 | Clytia hemisphaerica | exon |
| TCONS_00065753-exon-scaffold_444-1510915933:79236..79481 | TCONS_00065753-exon-scaffold_444-1510915933:79236..79481 | Clytia hemisphaerica | exon |
| TCONS_00065753-exon-scaffold_444-1575043694:79236..79481 | TCONS_00065753-exon-scaffold_444-1575043694:79236..79481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:78610..79481 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000157 | TIR_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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